Yinglong Miao, Ph.D.

Affiliations: 
2009 Chemistry Indiana University, Bloomington, Bloomington, IN, United States 
Area:
systems biology, physical chemistry
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"Yinglong Miao"
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Peter J. Ortoleva grad student 2009 Indiana University
 (All-atom multiscale computational modeling of viral dynamics.)
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Publications

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Miao Y, Bhattarai A, Wang J. (2020) Ligand Gaussian accelerated molecular dynamics (LiGaMD): Characterization of ligand binding thermodynamics and kinetics. Journal of Chemical Theory and Computation
Bhattarai A, Devkota S, Bhattarai S, et al. (2020) Mechanisms of γ-Secretase Activation and Substrate Processing. Acs Central Science. 6: 969-983
Pawnikar S, Miao Y. (2020) Pathway and mechanism of drug binding to chemokine receptors revealed by accelerated molecular simulations. Future Medicinal Chemistry
Bhattarai A, Wang J, Miao Y. (2020) Retrospective ensemble docking of allosteric modulators in an adenosine G-protein-coupled receptor. Biochimica Et Biophysica Acta. General Subjects. 129615
Wang J, Alekseenko A, Kozakov D, et al. (2020) Enhanced Sampling of Peptide Binding to Proteins through Gaussian Accelerated Molecular Dynamics Simulations Biophysical Journal. 118: 139a
Wang J, Alekseenko A, Kozakov D, et al. (2019) Improved Modeling of Peptide-Protein Binding Through Global Docking and Accelerated Molecular Dynamics Simulations. Frontiers in Molecular Biosciences. 6: 112
Bhattarai A, Wang J, Miao Y. (2019) G-Protein-Coupled Receptor-Membrane Interactions Depend on the Receptor Activation State. Journal of Computational Chemistry
Wang J, Miao Y. (2019) Mechanistic Insights into Specific G Protein Interactions with Adenosine Receptors. The Journal of Physical Chemistry. B
Ricci CG, Chen JS, Miao Y, et al. (2019) Deciphering Off-Target Effects in CRISPR-Cas9 through Accelerated Molecular Dynamics. Acs Central Science. 5: 651-662
Wang J, Miao Y. (2019) Recent advances in computational studies of GPCR-G protein interactions. Advances in Protein Chemistry and Structural Biology. 116: 397-419
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