Ben Langmead
Affiliations: | Computer Science | Johns Hopkins University, Baltimore, MD |
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Publications
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Chen NC, Paulin LF, Sedlazeck FJ, et al. (2023) Improved sequence mapping using a complete reference genome and lift-over. Nature Methods |
Song L, Langmead B. (2023) Centrifuger: lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification. Biorxiv : the Preprint Server For Biology |
Lin MJ, Iyer S, Chen NC, et al. (2023) Measuring, visualizing and diagnosing reference bias with biastools. Biorxiv : the Preprint Server For Biology |
Baker DN, Langmead B. (2023) Genomic sketching with multiplicities and locality-sensitive hashing using Dashing 2. Genome Research |
Ahmed O, Rossi M, Boucher C, et al. (2023) Efficient taxa identification using a pangenome index. Genome Research |
Ahmed OY, Rossi M, Gagie T, et al. (2023) SPUMONI 2: improved classification using a pangenome index of minimizer digests. Genome Biology. 24: 122 |
Bonnie JK, Ahmed O, Langmead B. (2023) DandD: efficient measurement of sequence growth and similarity. Biorxiv : the Preprint Server For Biology |
Imada EL, Wilks C, Langmead B, et al. (2023) REPAC: analysis of alternative polyadenylation from RNA-sequencing data. Genome Biology. 24: 22 |
Ling JP, Bygrave AM, Santiago CP, et al. (2022) Cell-specific regulation of gene expression using splicing-dependent frameshifting. Nature Communications. 13: 5773 |
Lu J, Rincon N, Wood DE, et al. (2022) Metagenome analysis using the Kraken software suite. Nature Protocols |