Ondrej Podlaha, Ph.D. - Publications

Affiliations: 
University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
molecular and genomic evolution

21/56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Podlaha O, Wu G, Downie B, Ramamurthy R, Gaggar A, Subramanian M, Ye Z, Jiang Z. Genomic modeling of hepatitis B virus integration frequency in the human genome. Plos One. 14: e0220376. PMID 31356634 DOI: 10.1371/Journal.Pone.0220376  0.317
2019 Podlaha O, Gane E, Brunetto M, Fung S, Chuang WL, Pan CQ, Jiang Z, Liu Y, Bhardwaj N, Mukherjee P, Flaherty J, Gaggar A, Subramanian M, Izumi N, Shalimar, et al. Large-scale viral genome analysis identifies novel clinical associations between hepatitis B virus and chronically infected patients. Scientific Reports. 9: 10529. PMID 31324819 DOI: 10.1038/S41598-019-46609-7  0.317
2019 Podlaha O, Wu G, Downie B, Ramamurthy RR, Gaggar A, Subramanian M, Ye Z, Jiang Z. SAT-191-Host genome integration of hepatitis B is prolific and is the primary contributor to viral HBs antigen gene expression Journal of Hepatology. 70: e714. DOI: 10.1016/S0618-8278(19)31426-4  0.348
2018 Podlaha O, Agarwal K, Thompson A, Foster G, Samuel D, Yatsuhashi H, Gaggar A, Kitrinos K, Jiang Z, Tong M, Gane E, Brunetto M. Whole genome viral sequencing reveals subgenotype specific dynamics of antiviral treatment response in HBeAg positive and treatment naive chronic hepatitis B patients Journal of Hepatology. 68: S778-S779. DOI: 10.1016/S0168-8278(18)31824-5  0.308
2017 Podlaha O, Revill P, Bhardwaj N, Zhuo L, Kitrinos K, Gaggar A, Jiang Z, Marcellin P, Locarnini S, Chan HL. Whole-genome deep sequencing of hepatitis B virus in chronic hepatitis B patients reveals single nucleotide variants associated with baseline HBV DNA levels and HBeAg status Journal of Hepatology. 66. DOI: 10.1016/S0168-8278(17)31829-9  0.309
2015 Bainer R, Yui Y, Mumenthaler S, Mallick P, Liu L, Wu H, Podlaha O, Michor F, Liphardt J, Licht J, Weaver V. Abstract PR09: Extracellular stiffness cues drive spatial reorganization of the genome to globally constrain RNA abundance Cancer Research. 75. DOI: 10.1158/1538-7445.Compsysbio-Pr09  0.328
2014 Tong X, Hrycaj S, Podlaha O, Popadic A, Monteiro A. Over-expression of Ultrabithorax alters embryonic body plan and wing patterns in the butterfly Bicyclus anynana. Developmental Biology. 394: 357-66. PMID 25169193 DOI: 10.1016/J.Ydbio.2014.08.020  0.345
2014 Podlaha O, De S, Gonen M, Michor F. Histone modifications are associated with transcript isoform diversity in normal and cancer cells. Plos Computational Biology. 10: e1003611. PMID 24901363 DOI: 10.1371/Journal.Pcbi.1003611  0.384
2014 Bainer R, Yui Y, Mumenthaler S, Mallick P, Podlaha O, Michor F, Liphardt J, Licht J, Weaver V. Abstract 2344: 3D extracellular stiffness cues drive localized changes in gene expression Cancer Research. 74: 2344-2344. DOI: 10.1158/1538-7445.Am2014-2344  0.411
2012 Seher TD, Ng CS, Signor SA, Podlaha O, Barmina O, Kopp A. Genetic basis of a violation of Dollo's Law: re-evolution of rotating sex combs in Drosophila bipectinata. Genetics. 192: 1465-75. PMID 23086218 DOI: 10.1534/Genetics.112.145524  0.365
2012 Podlaha O, Riester M, De S, Michor F. Evolution of the cancer genome. Trends in Genetics : Tig. 28: 155-63. PMID 22342180 DOI: 10.1016/J.Tig.2012.01.003  0.325
2011 Park SH, Podlaha O, Grus WE, Zhang J. The microevolution of V1r vomeronasal receptor genes in mice. Genome Biology and Evolution. 3: 401-12. PMID 21551350 DOI: 10.1093/Gbe/Evr039  0.579
2011 Chen B, Hrycaj S, Schinko JB, Podlaha O, Wimmer EA, Popadić A, Monteiro A. Pogostick: a new versatile piggyBac vector for inducible gene over-expression and down-regulation in emerging model systems. Plos One. 6: e18659. PMID 21533190 DOI: 10.1371/Journal.Pone.0018659  0.344
2009 Podlaha O, Zhang J. Processed pseudogenes: the 'fossilized footprints' of past gene expression. Trends in Genetics : Tig. 25: 429-34. PMID 19796837 DOI: 10.1016/J.Tig.2009.09.002  0.539
2009 Monteiro A, Podlaha O. Wings, horns, and butterfly eyespots: how do complex traits evolve? Plos Biology. 7: e37. PMID 19243218 DOI: 10.1371/Journal.Pbio.1000037  0.386
2006 Podlaha O, Webb DM, Zhang J. Accelerated evolution and loss of a domain of the sperm-egg-binding protein SED1 in ancestral primates. Molecular Biology and Evolution. 23: 1828-31. PMID 16864605 DOI: 10.1093/Molbev/Msl066  0.493
2005 Podlaha O, Webb DM, Tucker PK, Zhang J. Positive selection for indel substitutions in the rodent sperm protein catsper1. Molecular Biology and Evolution. 22: 1845-52. PMID 15930155 DOI: 10.1093/Molbev/Msi178  0.554
2004 Podlaha O, Zhang J. Nonneutral evolution of the transcribed pseudogene Makorin1-p1 in mice. Molecular Biology and Evolution. 21: 2202-9. PMID 15306660 DOI: 10.1093/Molbev/Msh230  0.532
2004 Zhang J, Wang X, Podlaha O. Testing the chromosomal speciation hypothesis for humans and chimpanzees. Genome Research. 14: 845-51. PMID 15123584 DOI: 10.1101/Gr.1891104  0.497
2003 Podlaha O, Zhang J. Positive selection on protein-length in the evolution of a primate sperm ion channel. Proceedings of the National Academy of Sciences of the United States of America. 100: 12241-6. PMID 14523237 DOI: 10.1073/Pnas.2033555100  0.519
2002 Zhang J, Webb DM, Podlaha O. Accelerated protein evolution and origins of human-specific features: Foxp2 as an example. Genetics. 162: 1825-35. PMID 12524352  0.493
Low-probability matches (unlikely to be authored by this person)
2018 Combet C, Bhardwaj N, Podlaha O, Gaggar A, Feierbach B, Kitrinos K, Murray K, Zoulim F. Deep sequencing analysis highlights variations associated with HBeAg seroconversion in adolescents with chronic hepatitis B Journal of Hepatology. 68: S784. DOI: 10.1016/S0168-8278(18)31838-5  0.276
2014 Raudenska M, Gumulec J, Podlaha O, Sztalmachova M, Babula P, Eckschlager T, Adam V, Kizek R, Masarik M. Metallothionein polymorphisms in pathological processes. Metallomics : Integrated Biometal Science. 6: 55-68. PMID 24068159 DOI: 10.1039/C3Mt00132F  0.264
2016 Estevez J, Chen VL, Podlaha O, Li B, Le A, Vutien P, Chang E, Jiang Z, Pflanz S, Ge D, Gaggar A, Nguyen MH. Differential Cytokine Profiles in Patients with Hepatocellular Carcinoma Related to Hepatitis B Virus and Hepatitis C Virus Infection Journal of Hepatology. 64. DOI: 10.1016/S0168-8278(16)00454-2  0.251
2017 Estevez J, Chen VL, Podlaha O, Li B, Le A, Vutien P, Chang ET, Rosenberg-Hasson Y, Jiang Z, Pflanz S, Ge D, Gaggar A, Nguyen MH. Differential Serum Cytokine Profiles in Patients with Chronic Hepatitis B, C, and Hepatocellular Carcinoma. Scientific Reports. 7: 11867. PMID 28928388 DOI: 10.1038/S41598-017-11975-7  0.247
2019 Hedskog C, Chang S, Parhy B, Burdette D, Podlaha O, Chuang W, Agarwal K, Gane E, Gaggar A, Fletcher S, Mo H, Svarovskaia ES. SAT-168-HBV splice DNA forms detected in serum in majority of patients with chronic HBV infection Journal of Hepatology. 70. DOI: 10.1016/S0618-8278(19)31403-3  0.245
2016 Chen VL, Podlaha O, Estevez J, Li B, Le A, Vutien P, Chang E, Pflanz S, Jiang Z, Ge D, Gaggar A, Nguyen M. High Serum Soluble Intercellular Adhesion Molecule 1 (ICAM-1) Concentration Is Associated with Hepatocellular Carcinoma (HCC) Development in HBV, HCV, and Non-Viral Liver Disease: Multiplex Analysis of 51 Cytokines and Other Serum Markers Journal of Hepatology. 64. DOI: 10.1016/S0168-8278(16)00143-4  0.236
2024 Xu ZM, Gnouamozi GE, Rüeger S, Shea PR, Buti M, Chan HL, Marcellin P, Lawless D, Naret O, Zeller M, Schneuing A, Scheck A, Junier T, Moradpour D, Podlaha O, et al. Joint host-pathogen genomic analysis identifies hepatitis B virus mutations associated with human NTCP and HLA class I variation. American Journal of Human Genetics. PMID 38749427 DOI: 10.1016/j.ajhg.2024.04.013  0.236
2017 Chen VL, Le AK, Podlaha O, Estevez J, Li B, Vutien P, Chang ET, Rosenberg-Hasson Y, Pflanz S, Jiang Z, Ge D, Gaggar A, Nguyen MH. Soluble intercellular adhesion molecule-1 is associated with hepatocellular carcinoma risk: multiplex analysis of serum markers. Scientific Reports. 7: 11169. PMID 28894136 DOI: 10.1038/S41598-017-10498-5  0.225
2016 Wee B, Pietras A, Ozawa T, Bazzoli E, Podlaha O, Antczak C, Westermark B, Nelander S, Uhrbom L, Forsberg-Nilsson K, Djaballah H, Michor F, Holland EC. ABCG2 regulates self-renewal and stem cell marker expression but not tumorigenicity or radiation resistance of glioma cells. Scientific Reports. 6: 25956. PMID 27456282 DOI: 10.1038/Srep25956  0.212
2021 Combet C, Bhardwaj N, Hedskog C, Podlaha O, Gaggar A, Murray KF, Mo H, Svarovskaia E, Zoulim F. Hepatitis B Virus Genome Diversity in Adolescents: Tenofovir Disoproxil Fumarate Treatment Effect and HBeAg Seroconversion. Journal of Viral Hepatitis. PMID 34002910 DOI: 10.1111/jvh.13547  0.191
2022 Hsu YC, Suri V, Nguyen MH, Huang YT, Chen CY, Chang IW, Tseng CH, Wu CY, Lin JT, Pan DZ, Gaggar A, Podlaha O. Inhibition of Viral Replication Reduces Transcriptionally Active Distinct Hepatitis B Virus Integrations with Implications on Host Gene Dysregulation. Gastroenterology. PMID 34995536 DOI: 10.1053/j.gastro.2021.12.286  0.178
1975 Ohlson R, Podlaha O, Töregård B. Stereospecific analysis of some cruciferae species Lipids. 10: 732-735. DOI: 10.1007/BF02532313  0.156
1999 Kadonaga LK, Podlaha O, Whiticar MJ. Time series analyses of tree ring chronologies from Pacific North America: Evidence for sub-century climate oscillations Chemical Geology. 161: 339-363. DOI: 10.1016/S0009-2541(99)00094-7  0.112
1997 Veizer J, Buhl D, Diener A, Ebneth S, Podlaha OG, Bruckschen P, Jasper T, Korte C, Schaaf M, Ala D, Azmy K. Strontium isotope stratigraphy: Potential resolution and event correlation Palaeogeography, Palaeoclimatology, Palaeoecology. 132: 65-77. DOI: 10.1016/S0031-0182(97)00054-0  0.095
1999 Veizer J, Ala D, Azmy K, Bruckschen P, Buhl D, Bruhn F, Garden GAF, Diener A, Ebneth S, Godderis Y, Jasper T, Korte C, Pawellek F, Podlaha OG, Strauss H. 87Sr/86Sr, δ13C and δ18O evolution of Phanerozoic seawater Chemical Geology. 161: 59-88.  0.094
2024 Cai Y, Podlaha O, Deeks SG, Brinson C, Ramgopal MN, DeJesus E, Mills A, Shalit P, Abdel-Mohsen M, Zhang L, de Vries CR, Vendrame E, SenGupta D, Wallin JJ. HIV rebound in HIV controllers is associated with a specific fecal microbiome profile. European Journal of Immunology. e2350809. PMID 38727191 DOI: 10.1002/eji.202350809  0.068
2022 Sharpton SR, Podlaha O, Chuang JC, Gindin Y, Myers RP, Loomba R. Changes in the gut microbiome associated with liver stiffness improvement in nonalcoholic steatohepatitis. Therapeutic Advances in Gastroenterology. 15: 17562848221098243. PMID 35601801 DOI: 10.1177/17562848221098243  0.065
1989 Podlaha O, Töregård B. Some new observations on the equivalent carbon numbers of triglycerides and relationship between changes in equivalent carbon number and molecular structure Journal of Chromatography A. 482: 215-226. DOI: 10.1016/S0021-9673(01)93222-4  0.052
1997 Veizer J, Bruckschen P, Pawellek F, Diener A, Podlaha OG, Carden GAF, Jasper T, Korte C, Strauss H, Azmy K, Ala D. Oxygen isotope evolution of Phanerozoic seawater Palaeogeography, Palaeoclimatology, Palaeoecology. 132: 159-172. DOI: 10.1016/S0031-0182(97)00052-7  0.051
2006 Keym M, Dieckmann V, Horsfield B, Erdmann M, Galimberti R, Kua LC, Leith L, Podlaha O. Source rock heterogeneity of the Upper Jurassic Draupne Formation, North Viking Graben, and its relevance to petroleum generation studies Organic Geochemistry. 37: 220-243. DOI: 10.1016/j.orggeochem.2005.08.023  0.039
1998 Podlaha OG, Mutterlose J, Veizer J. Preservation of δ18O and δ13C in belemnite rostra from the Jurassic/Early Cretaceous successions American Journal of Science. 298: 324-347.  0.036
1959 BOHDALOVA V, PODLAHA O, DIVIS E. [Nitrogen balance and its relation to potassium balance in cardiac decompensation]. Deutsche Zeitschrift FüR Verdauungs- Und Stoffwechselkrankheiten. 19: 109-18. PMID 13802178  0.036
2004 Hirst B, Gibson G, Gillespie S, Archibald I, Podlaha O, Skeldon KD, Courtial J, Monk S, Padgett M. Oil and gas prospecting by ultra-sensitive optical gas detection with inverse gas dispersion modelling Geophysical Research Letters. 31: L12115 1-4. DOI: 10.1029/2004Gl019678  0.032
1999 Podlaha OG, Chalimourda A, Albeverio S. Nonlinear system analysis of a 87Sr/86Sr time series for Phanerozoic seawater Chemical Geology. 161: 241-252.  0.03
1981 Petersson B, Podlaha O, Töregård B. HPLC separation of natural oil triglycerides into fractions with the same carbon number and numbers of double bonds Journal of the American Oil Chemists Society. 58: 1005-1009. DOI: 10.1007/BF02659784  0.028
2014 Keym M, Meuric O, Kuhn P, Buerger C, Dieckmann V, Podlaha O, Senior W. Basin-scale simulators for de-risking of unconventional play-types: A practical approach to enable in-time decision support Society of Petroleum Engineers - International Petroleum Technology Conference 2014, Iptc 2014: Unlocking Energy Through Innovation, Technology and Capability. 4: 2845-2849.  0.027
2014 Kennan L, Kuznetsova N, Spaak M, Hafkenscheid E, Meuric O, Podlaha O, Biegert E. Bridging the gap between thermal modeling of sedimentary basins and potential fields modeling: Using geophysics to constrain hydrocarbon charge models in data-poor frontier areas Society of Petroleum Engineers - International Petroleum Technology Conference 2014, Iptc 2014: Unlocking Energy Through Innovation, Technology and Capability. 4: 3064-3069.  0.017
1978 Podlaha O, Eriksson A, Toregård B. An investigation of the basic conditions for tocopherol determination in vegetable oils and fats by differential pulse polarography Journal of the American Oil Chemists' Society. 55: 530-532. DOI: 10.1007/BF02668063  0.016
1968 Ohlson R, Persmark U, Podlaha O. Determination of citric acid in fats. Journal of the American Oil Chemists' Society. 45: 475-6. PMID 5652807 DOI: 10.1007/BF02655513  0.015
1996 Flintrop C, Hohlmann B, Jasper T, Korte C, Podlaha OG, Scheele S, Veizer J. Anatomy of pollution: Rivers of north Rhine-Westphalia, Germany American Journal of Science. 296: 58-98.  0.014
1993 Petersson B, Podlaha O, Jirskog-Hed B. Triacylglycerol analysis of partially hydrogenated fats using high-performance liquid chromatography Journal of Chromatography A. 653: 25-35. DOI: 10.1016/0021-9673(93)80388-O  0.012
2015 Alqudah M, Ali Hussein M, van den Boorn S, Podlaha OG, Mutterlose J. Biostratigraphy and depositional setting of Maastrichtian - Eocene oil shales from Jordan Marine and Petroleum Geology. 60: 87-104. DOI: 10.1016/j.marpetgeo.2014.07.025  0.01
2014 Alqudah M, Ali Hussein M, van den Boorn S, Giraldo VM, Kolonic S, Podlaha OG, Mutterlose J. Eocene oil shales from jordan - paleoenvironmental implications from reworked microfossils Marine and Petroleum Geology. 52: 93-106. DOI: 10.1016/j.marpetgeo.2014.02.001  0.01
1987 Podlaha O. Letter symbols in the chemistry of glyceridic fats and oils Journal of Chromatography A. 410: 509-510. DOI: 10.1016/S0021-9673(00)90087-6  0.01
1979 Herslöf B, Podlaha O, Töregård B. HPLC of triglycerides Journal of the American Oil Chemists' Society. 56: 864-866. DOI: 10.1007/BF02909537  0.01
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