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Anais Baudot - Publications

Affiliations: 
Centro Nacional de Biotecnología, Madrid, Comunidad de Madrid, Spain 
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Sánchez-Valle J, Tejero H, Fernández JM, Juan D, Urda-García B, Capella-Gutiérrez S, Al-Shahrour F, Tabarés-Seisdedos R, Baudot A, Pancaldi V, Valencia A. Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships. Nature Communications. 11: 2854. PMID 32504002 DOI: 10.1038/S41467-020-16540-X  0.534
2019 Katsogiannou M, Boyer JB, Valdeolivas A, Remy E, Calzone L, Audebert S, Rocchi P, Camoin L, Baudot A. Integrative proteomic and phosphoproteomic profiling of prostate cell lines. Plos One. 14: e0224148. PMID 31675377 DOI: 10.1371/Journal.Pone.0224148  0.312
2019 Greco A, Sanchez Valle J, Pancaldi V, Baudot A, Barillot E, Caselle M, Valencia A, Zinovyev A, Cantini L. Molecular Inverse Comorbidity between Alzheimer's Disease and Lung Cancer: New Insights from Matrix Factorization. International Journal of Molecular Sciences. 20. PMID 31247897 DOI: 10.3390/Ijms20133114  0.547
2019 Forés-Martos J, Catalá-López F, Sánchez-Valle J, Ibáñez K, Tejero H, Palma-Gudiel H, Climent J, Pancaldi V, Fañanás L, Arango C, Parellada M, Baudot A, Vogt D, Rubenstein JL, Valencia A, et al. Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer. Molecular Autism. 10: 17. PMID 31007884 DOI: 10.1186/S13229-019-0262-8  0.579
2018 Didier G, Valdeolivas A, Baudot A. Identifying communities from multiplex biological networks by randomized optimization of modularity. F1000research. 7: 1042. PMID 30210790 DOI: 10.12688/F1000Research.15486.1  0.338
2018 Valdeolivas A, Tichit L, Navarro C, Perrin S, Odelin G, Levy N, Cau P, Remy E, Baudot A. Random Walk with Restart on Multiplex and Heterogeneous Biological Networks. Bioinformatics (Oxford, England). PMID 30020411 DOI: 10.1093/Bioinformatics/Bty637  0.391
2017 Sánchez-Valle J, Tejero H, Ibáñez K, Portero JL, Krallinger M, Al-Shahrour F, Tabarés-Seisdedos R, Baudot A, Valencia A. A molecular hypothesis to explain direct and inverse co-morbidities between Alzheimer's Disease, Glioblastoma and Lung cancer. Scientific Reports. 7: 4474. PMID 28667284 DOI: 10.1038/S41598-017-04400-6  0.538
2016 Tabarés-Seisdedos R, Baudot A. Editorial: Direct and Inverse Comorbidities Between Complex Disorders. Frontiers in Physiology. 7: 117. PMID 27065885 DOI: 10.3389/Fphys.2016.00117  0.408
2015 Didier G, Brun C, Baudot A. Identifying communities from multiplex biological networks. Peerj. 3: e1525. PMID 26713261 DOI: 10.7717/Peerj.1525  0.382
2015 Flobak Å, Baudot A, Remy E, Thommesen L, Thieffry D, Kuiper M, Lægreid A. Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling. Plos Computational Biology. 11: e1004426. PMID 26317215 DOI: 10.1371/Journal.Pcbi.1004426  0.333
2015 Tripathi S, Flobak Å, Chawla K, Baudot A, Bruland T, Thommesen L, Kuiper M, Lægreid A. The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms. Bmc Systems Biology. 9: 40. PMID 26205660 DOI: 10.1186/S12918-015-0181-Z  0.327
2014 Katsogiannou M, Andrieu C, Baylot V, Baudot A, Dusetti NJ, Gayet O, Finetti P, Garrido C, Birnbaum D, Bertucci F, Brun C, Rocchi P. The functional landscape of Hsp27 reveals new cellular processes such as DNA repair and alternative splicing and proposes novel anticancer targets. Molecular & Cellular Proteomics : McP. 13: 3585-601. PMID 25277244 DOI: 10.1074/Mcp.M114.041228  0.397
2014 Ibáñez K, Boullosa C, Tabarés-Seisdedos R, Baudot A, Valencia A. Molecular evidence for the inverse comorbidity between central nervous system disorders and cancers detected by transcriptomic meta-analyses. Plos Genetics. 10: e1004173. PMID 24586201 DOI: 10.1371/Journal.Pgen.1004173  0.655
2013 Spinelli L, Gambette P, Chapple CE, Robisson B, Baudot A, Garreta H, Tichit L, Guénoche A, Brun C. Clust&See: a Cytoscape plugin for the identification, visualization and manipulation of network clusters. Bio Systems. 113: 91-5. PMID 23743336 DOI: 10.1016/J.Biosystems.2013.05.010  0.304
2012 Glaab E, Baudot A, Krasnogor N, Schneider R, Valencia A. EnrichNet: network-based gene set enrichment analysis. Bioinformatics (Oxford, England). 28: i451-i457. PMID 22962466 DOI: 10.1093/Bioinformatics/Bts389  0.546
2012 Baudot A, Souiai O, Brun C. Network analysis and protein function prediction with the PRODISTIN Web site. Methods in Molecular Biology (Clifton, N.J.). 804: 313-26. PMID 22144161 DOI: 10.1007/978-1-61779-361-5_17  0.37
2011 Tabarés-Seisdedos R, Dumont N, Baudot A, Valderas JM, Climent J, Valencia A, Crespo-Facorro B, Vieta E, Gómez-Beneyto M, Martínez S, Rubenstein JL. No paradox, no progress: inverse cancer comorbidity in people with other complex diseases. The Lancet. Oncology. 12: 604-8. PMID 21498115 DOI: 10.1016/S1470-2045(11)70041-9  0.572
2011 Glaab E, Baudot A, Krasnogor N, Valencia A. PathExpand: Extending biological pathways using molecular interaction networks Nature Precedings. DOI: 10.1038/Npre.2011.5639.1  0.519
2010 Glaab E, Baudot A, Krasnogor N, Valencia A. Extending pathways and processes using molecular interaction networks to analyse cancer genome data. Bmc Bioinformatics. 11: 597. PMID 21144022 DOI: 10.1186/1471-2105-11-597  0.593
2010 Baudot A, de la Torre V, Valencia A. Mutated genes, pathways and processes in tumours. Embo Reports. 11: 805-10. PMID 20847737 DOI: 10.1038/embor.2010.133  0.518
2010 Pilot-Storck F, Chopin E, Rual JF, Baudot A, Dobrokhotov P, Robinson-Rechavi M, Brun C, Cusick ME, Hill DE, Schaeffer L, Vidal M, Goillot E. Interactome mapping of the phosphatidylinositol 3-kinase-mammalian target of rapamycin pathway identifies deformed epidermal autoregulatory factor-1 as a new glycogen synthase kinase-3 interactor. Molecular & Cellular Proteomics : McP. 9: 1578-93. PMID 20368287 DOI: 10.1074/Mcp.M900568-Mcp200  0.325
2010 Glaab E, Baudot A, Krasnogor N, Valencia A. TopoGSA: network topological gene set analysis. Bioinformatics (Oxford, England). 26: 1271-2. PMID 20335277 DOI: 10.1093/Bioinformatics/Btq131  0.533
2009 Baudot A, Gómez-López G, Valencia A. Translational disease interpretation with molecular networks. Genome Biology. 10: 221. PMID 19591646 DOI: 10.1186/Gb-2009-10-6-221  0.518
2009 Baudot A, Real FX, Izarzugaza JM, Valencia A. From cancer genomes to cancer models: bridging the gaps. Embo Reports. 10: 359-66. PMID 19305388 DOI: 10.1038/Embor.2009.46  0.507
2008 Baudot A, Angelelli JB, Guénoche A, Jacq B, Brun C. Defining a modular signalling network from the fly interactome. Bmc Systems Biology. 2: 45. PMID 18489752 DOI: 10.1186/1752-0509-2-45  0.363
2006 Baudot A, Martin D, Mouren P, Chevenet F, Guénoche A, Jacq B, Brun C. PRODISTIN Web Site: a tool for the functional classification of proteins from interaction networks. Bioinformatics (Oxford, England). 22: 248-50. PMID 16269417 DOI: 10.1093/Bioinformatics/Bti757  0.369
2004 Baudot A, Jacq B, Brun C. A scale of functional divergence for yeast duplicated genes revealed from analysis of the protein-protein interaction network. Genome Biology. 5: R76. PMID 15461795 DOI: 10.1186/Gb-2004-5-10-R76  0.382
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