Sergey Koren - Publications

Affiliations: 
The J. Craig Venter Institute, San Diego, CA, United States 

114/196 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Lorig-Roach R, Meredith M, Monlong J, Jain M, Olsen H, McNulty B, Porubsky D, Montague T, Lucas J, Condon C, Eizenga JM, Juul S, McKenzie S, Simmonds SE, Park J, ... ... Koren S, et al. Phased nanopore assembly with Shasta and modular graph phasing with GFAse. Genome Research. PMID 38627094 DOI: 10.1101/gr.278268.123  0.428
2024 Logsdon GA, Rozanski AN, Ryabov F, Potapova T, Shepelev VA, Catacchio CR, Porubsky D, Mao Y, Yoo D, Rautiainen M, Koren S, Nurk S, Lucas JK, Hoekzema K, Munson KM, et al. The variation and evolution of complete human centromeres. Nature. PMID 38570684 DOI: 10.1038/s41586-024-07278-3  0.445
2024 Henglin M, Ghareghani M, Harvey W, Porubsky D, Koren S, Eichler EE, Ebert P, Marschall T. Phasing Diploid Genome Assembly Graphs with Single-Cell Strand Sequencing. Biorxiv : the Preprint Server For Biology. PMID 38529499 DOI: 10.1101/2024.02.15.580432  0.385
2024 Koren S, Bao Z, Guarracino A, Ou S, Goodwin S, Jenike KM, Lucas J, McNulty B, Park J, Rautianinen M, Rhie A, Roelofs D, Schneiders H, Vrijenhoek I, Nijbroek K, et al. Gapless assembly of complete human and plant chromosomes using only nanopore sequencing. Biorxiv : the Preprint Server For Biology. PMID 38529488 DOI: 10.1101/2024.03.15.585294  0.576
2023 Oppert B, Dossey AT, Chu FC, Šatović-Vukšić E, Plohl M, Smith TPL, Koren S, Olmstead ML, Leierer D, Ragan G, Johnston JS. The Genome of the Yellow Mealworm, : It's Bigger Than You Think. Genes. 14. PMID 38137031 DOI: 10.3390/genes14122209  0.377
2023 Chen NC, Paulin LF, Sedlazeck FJ, Koren S, Phillippy AM, Langmead B. Improved sequence mapping using a complete reference genome and lift-over. Nature Methods. PMID 38036856 DOI: 10.1038/s41592-023-02069-6  0.512
2023 Rhie A, Nurk S, Cechova M, Hoyt SJ, Taylor DJ, Altemose N, Hook PW, Koren S, Rautiainen M, Alexandrov IA, Allen J, Asri M, Bzikadze AV, Chen NC, Chin CS, et al. The complete sequence of a human Y chromosome. Nature. PMID 37612512 DOI: 10.1038/s41586-023-06457-y  0.43
2023 Fodor E, Okendo J, Szabó N, Szabó K, Czimer D, Tarján-Rácz A, Szeverényi I, Low BW, Liew JH, Koren S, Rhie A, Orbán L, Miklósi Á, Varga M, Burgess SM. The reference genome of the paradise fish ( ). Biorxiv : the Preprint Server For Biology. PMID 37609174 DOI: 10.1101/2023.08.10.552018  0.469
2023 Logsdon GA, Rozanski AN, Ryabov F, Potapova T, Shepelev VA, Mao Y, Rautiainen M, Koren S, Nurk S, Porubsky D, Lucas JK, Hoekzema K, Munson KM, Gerton JL, Phillippy AM, et al. The variation and evolution of complete human centromeres. Biorxiv : the Preprint Server For Biology. PMID 37398417 DOI: 10.1101/2023.05.30.542849  0.367
2023 Cheng H, Asri M, Lucas J, Koren S, Li H. Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph. Arxiv. PMID 37332563  0.494
2023 Dossey AT, Oppert B, Chu FC, Lorenzen MD, Scheffler B, Simpson S, Koren S, Johnston JS, Kataoka K, Ide K. Genome and Genetic Engineering of the House Cricket (): A Resource for Sustainable Agriculture. Biomolecules. 13. PMID 37189337 DOI: 10.3390/biom13040589  0.331
2023 Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ, Buonaiuto S, Chang XH, Cheng H, Chu J, Colonna V, ... ... Koren S, et al. A draft human pangenome reference. Nature. 617: 312-324. PMID 37165242 DOI: 10.1038/s41586-023-05896-x  0.406
2023 Guarracino A, Buonaiuto S, de Lima LG, Potapova T, Rhie A, Koren S, Rubinstein B, Fischer C, Gerton JL, Phillippy AM, Colonna V, Garrison E. Recombination between heterologous human acrocentric chromosomes. Nature. 617: 335-343. PMID 37165241 DOI: 10.1038/s41586-023-05976-y  0.323
2023 Waldbieser GC, Liu S, Yuan Z, Older CE, Gao D, Shi C, Bosworth BG, Li N, Bao L, Kirby MA, Jin Y, Wood ML, Scheffler B, Simpson S, Youngblood RC, ... ... Koren S, et al. Reference genomes of channel catfish and blue catfish reveal multiple pericentric chromosome inversions. Bmc Biology. 21: 67. PMID 37013528 DOI: 10.1186/s12915-023-01556-8  0.327
2023 Lorig-Roach R, Meredith M, Monlong J, Jain M, Olsen H, McNulty B, Porubsky D, Montague T, Lucas J, Condon C, Eizenga J, Juul S, McKenzie S, Simmonds SE, Park J, ... ... Koren S, et al. Phased nanopore assembly with Shasta and modular graph phasing with GFAse. Biorxiv : the Preprint Server For Biology. PMID 36865218 DOI: 10.1101/2023.02.21.529152  0.366
2023 Rautiainen M, Nurk S, Walenz BP, Logsdon GA, Porubsky D, Rhie A, Eichler EE, Phillippy AM, Koren S. Telomere-to-telomere assembly of diploid chromosomes with Verkko. Nature Biotechnology. PMID 36797493 DOI: 10.1038/s41587-023-01662-6  0.493
2022 Jarvis ED, Formenti G, Rhie A, Guarracino A, Yang C, Wood J, Tracey A, Thibaud-Nissen F, Vollger MR, Porubsky D, Cheng H, Asri M, Logsdon GA, Carnevali P, Chaisson MJP, ... ... Koren S, et al. Semi-automated assembly of high-quality diploid human reference genomes. Nature. PMID 36261518 DOI: 10.1038/s41586-022-05325-5  0.541
2022 McGrath JM, Funk A, Galewski P, Ou S, Townsend B, Davenport K, Daligault H, Johnson S, Lee J, Hastie A, Darracq A, Willems G, Barnes S, Liachko I, Sullivan S, ... Koren S, et al. A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.). Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 36208288 DOI: 10.1093/dnares/dsac033  0.537
2022 Jain C, Rhie A, Hansen NF, Koren S, Phillippy AM. Long-read mapping to repetitive reference sequences using Winnowmap2. Nature Methods. PMID 35365778 DOI: 10.1038/s41592-022-01457-8  0.383
2022 Formenti G, Rhie A, Walenz BP, Thibaud-Nissen F, Shafin K, Koren S, Myers EW, Jarvis ED, Phillippy AM. Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation. Nature Methods. PMID 35361932 DOI: 10.1038/s41592-022-01445-y  0.402
2022 Mc Cartney AM, Shafin K, Alonge M, Bzikadze AV, Formenti G, Fungtammasan A, Howe K, Jain C, Koren S, Logsdon GA, Miga KH, Mikheenko A, Paten B, Shumate A, Soto DC, et al. Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies. Nature Methods. PMID 35361931 DOI: 10.1038/s41592-022-01440-3  0.509
2022 Aganezov S, Yan SM, Soto DC, Kirsche M, Zarate S, Avdeyev P, Taylor DJ, Shafin K, Shumate A, Xiao C, Wagner J, McDaniel J, Olson ND, Sauria MEG, Vollger MR, ... ... Koren S, et al. A complete reference genome improves analysis of human genetic variation. Science (New York, N.Y.). 376: eabl3533. PMID 35357935 DOI: 10.1126/science.abl3533  0.472
2022 Nurk S, Koren S, Rhie A, Rautiainen M, Bzikadze AV, Mikheenko A, Vollger MR, Altemose N, Uralsky L, Gershman A, Aganezov S, Hoyt SJ, Diekhans M, Logsdon GA, Alonge M, et al. The complete sequence of a human genome. Science (New York, N.Y.). 376: 44-53. PMID 35357919 DOI: 10.1126/science.abj6987  0.521
2022 Vollger MR, Guitart X, Dishuck PC, Mercuri L, Harvey WT, Gershman A, Diekhans M, Sulovari A, Munson KM, Lewis AP, Hoekzema K, Porubsky D, Li R, Nurk S, Koren S, et al. Segmental duplications and their variation in a complete human genome. Science (New York, N.Y.). 376: eabj6965. PMID 35357917 DOI: 10.1126/science.abj6965  0.48
2022 Gershman A, Sauria MEG, Guitart X, Vollger MR, Hook PW, Hoyt SJ, Jain M, Shumate A, Razaghi R, Koren S, Altemose N, Caldas GV, Logsdon GA, Rhie A, Eichler EE, et al. Epigenetic patterns in a complete human genome. Science (New York, N.Y.). 376: eabj5089. PMID 35357915 DOI: 10.1126/science.abj5089  0.431
2022 Altemose N, Logsdon GA, Bzikadze AV, Sidhwani P, Langley SA, Caldas GV, Hoyt SJ, Uralsky L, Ryabov FD, Shew CJ, Sauria MEG, Borchers M, Gershman A, Mikheenko A, Shepelev VA, ... ... Koren S, et al. Complete genomic and epigenetic maps of human centromeres. Science (New York, N.Y.). 376: eabl4178. PMID 35357911 DOI: 10.1126/science.abl4178  0.496
2022 Oppert B, Muszewska A, Steczkiewicz K, Šatović-Vukšić E, Plohl M, Fabrick JA, Vinokurov KS, Koloniuk I, Johnston JS, Smith TPL, Guedes RNC, Terra WR, Ferreira C, Dias RO, Chaply KA, ... ... Koren S, et al. The Genome of (Fab.) (Coleoptera: Bostrichidae): Adaptation for Success. Genes. 13. PMID 35328000 DOI: 10.3390/genes13030446  0.469
2021 McCartney MA, Auch B, Kono T, Mallez S, Zhang Y, Obille A, Becker A, Abrahante JE, Garbe J, Badalamenti JP, Herman A, Mangelson H, Liachko I, Sullivan S, Sone ED, ... Koren S, et al. The Genome of the Zebra Mussel, Dreissena polymorpha: A Resource for Comparative Genomics, Invasion Genetics, and Biocontrol. G3 (Bethesda, Md.). PMID 34897429 DOI: 10.1093/g3journal/jkab423  0.49
2021 Tan M, Redmond AK, Dooley H, Nozu R, Sato K, Kuraku S, Koren S, Phillippy AM, Dove AD, Read T. The whale shark genome reveals patterns of vertebrate gene family evolution. Elife. 10. PMID 34409936 DOI: 10.7554/eLife.65394  0.373
2021 Palatini U, Masri RA, Cosme LV, Koren S, Thibaud-Nissen F, Biedler JK, Krsticevic F, Johnston JS, Halbach R, Crawford JE, Antoshechkin I, Failloux AB, Pischedda E, Marconcini M, Ghurye J, et al. Author Correction: Improved reference genome of the arboviral vector Aedes albopictus. Genome Biology. 22: 205. PMID 34253230 DOI: 10.1186/s13059-021-02431-x  0.404
2021 Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 592: 737-746. PMID 33911273 DOI: 10.1038/s41586-021-03451-0  0.554
2021 Kronenberg ZN, Rhie A, Koren S, Concepcion GT, Peluso P, Munson KM, Porubsky D, Kuhn K, Mueller KA, Low WY, Hiendleder S, Fedrigo O, Liachko I, Hall RJ, Phillippy AM, et al. Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C. Nature Communications. 12: 1935. PMID 33911078 DOI: 10.1038/s41467-020-20536-y  0.383
2021 Formenti G, Rhie A, Balacco J, Haase B, Mountcastle J, Fedrigo O, Brown S, Capodiferro MR, Al-Ajli FO, Ambrosini R, Houde P, Koren S, Oliver K, Smith M, Skelton J, et al. Complete vertebrate mitogenomes reveal widespread repeats and gene duplications. Genome Biology. 22: 120. PMID 33910595 DOI: 10.1186/s13059-021-02336-9  0.419
2021 Yang C, Zhou Y, Marcus S, Formenti G, Bergeron LA, Song Z, Bi X, Bergman J, Rousselle MMC, Zhou C, Zhou L, Deng Y, Fang M, Xie D, Zhu Y, ... ... Koren S, et al. Evolutionary and biomedical insights from a marmoset diploid genome assembly. Nature. PMID 33910227 DOI: 10.1038/s41586-021-03535-x  0.483
2021 Logsdon GA, Vollger MR, Hsieh P, Mao Y, Liskovykh MA, Koren S, Nurk S, Mercuri L, Dishuck PC, Rhie A, de Lima LG, Dvorkina T, Porubsky D, Harvey WT, Mikheenko A, et al. The structure, function and evolution of a complete human chromosome 8. Nature. PMID 33828295 DOI: 10.1038/s41586-021-03420-7  0.4
2020 Rhie A, Walenz BP, Koren S, Phillippy AM. Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies. Genome Biology. 21: 245. PMID 32928274 DOI: 10.1186/S13059-020-02134-9  0.514
2020 Palatini U, Masri RA, Cosme LV, Koren S, Thibaud-Nissen F, Biedler JK, Krsticevic F, Johnston JS, Halbach R, Crawford JE, Antoshechkin I, Failloux AB, Pischedda E, Marconcini M, Ghurye J, et al. Improved reference genome of the arboviral vector Aedes albopictus. Genome Biology. 21: 215. PMID 32847630 DOI: 10.1186/S13059-020-02141-W  0.452
2020 Nurk S, Walenz BP, Rhie A, Vollger MR, Logsdon GA, Grothe R, Miga KH, Eichler EE, Phillippy AM, Koren S. HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads. Genome Research. PMID 32801147 DOI: 10.1101/Gr.263566.120  0.625
2020 Shafin K, Pesout T, Lorig-Roach R, Haukness M, Olsen HE, Bosworth C, Armstrong J, Tigyi K, Maurer N, Koren S, Sedlazeck FJ, Marschall T, Mayes S, Costa V, Zook JM, et al. Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes. Nature Biotechnology. PMID 32686750 DOI: 10.1038/S41587-020-0503-6  0.624
2020 Miga KH, Koren S, Rhie A, Vollger MR, Gershman A, Bzikadze A, Brooks S, Howe E, Porubsky D, Logsdon GA, Schneider VA, Potapova T, Wood J, Chow W, Armstrong J, et al. Telomere-to-telomere assembly of a complete human X chromosome. Nature. PMID 32663838 DOI: 10.1038/S41586-020-2547-7  0.532
2020 Jain C, Rhie A, Zhang H, Chu C, Walenz BP, Koren S, Phillippy AM. Weighted minimizer sampling improves long read mapping. Bioinformatics (Oxford, England). 36: i111-i118. PMID 32657365 DOI: 10.1093/Bioinformatics/Btaa435  0.532
2020 Warr A, Affara N, Aken B, Beiki H, Bickhart DM, Billis K, Chow W, Eory L, Finlayson HA, Flicek P, Girón CG, Griffin DK, Hall R, Hannum G, Hourlier T, ... ... Koren S, et al. An improved pig reference genome sequence to enable pig genetics and genomics research. Gigascience. 9. PMID 32543654 DOI: 10.1093/Gigascience/Giaa051  0.563
2020 Zook JM, Hansen NF, Olson ND, Chapman L, Mullikin JC, Xiao C, Sherry S, Koren S, Phillippy AM, Boutros PC, Sahraeian SME, Huang V, Rouette A, Alexander N, Mason CE, et al. A robust benchmark for detection of germline large deletions and insertions. Nature Biotechnology. PMID 32541955 DOI: 10.1038/S41587-020-0538-8  0.551
2020 Ou S, Liu J, Chougule KM, Fungtammasan A, Seetharam AS, Stein JC, Llaca V, Manchanda N, Gilbert AM, Wei S, Chin CS, Hufnagel DE, Pedersen S, Snodgrass SJ, Fengler K, ... ... Koren S, et al. Effect of sequence depth and length in long-read assembly of the maize inbred NC358. Nature Communications. 11: 2288. PMID 32385271 DOI: 10.1038/S41467-020-16037-7  0.593
2020 Low WY, Tearle R, Liu R, Koren S, Rhie A, Bickhart DM, Rosen BD, Kronenberg ZN, Kingan SB, Tseng E, Thibaud-Nissen F, Martin FJ, Billis K, Ghurye J, Hastie AR, et al. Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle. Nature Communications. 11: 2071. PMID 32350247 DOI: 10.1038/S41467-020-15848-Y  0.56
2020 Rice ES, Koren S, Rhie A, Heaton MP, Kalbfleisch TS, Hardy T, Hackett PH, Bickhart DM, Rosen BD, Ley BV, Maurer NW, Green RE, Phillippy AM, Petersen JL, Smith TPL. Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle. Gigascience. 9. PMID 32242610 DOI: 10.1093/Gigascience/Giaa029  0.573
2020 Rosen BD, Bickhart DM, Schnabel RD, Koren S, Elsik CG, Tseng E, Rowan TN, Low WY, Zimin A, Couldrey C, Hall R, Li W, Rhie A, Ghurye J, McKay SD, et al. De novo assembly of the cattle reference genome with single-molecule sequencing. Gigascience. 9. PMID 32191811 DOI: 10.1093/Gigascience/Giaa021  0.585
2020 Waterhouse RM, Aganezov S, Anselmetti Y, Lee J, Ruzzante L, Reijnders MJMF, Feron R, Bérard S, George P, Hahn MW, Howell PI, Kamali M, Koren S, Lawson D, Maslen G, et al. Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies. Bmc Biology. 18: 1. PMID 31898513 DOI: 10.1186/S12915-019-0728-3  0.611
2019 Liu R, Low WY, Tearle R, Koren S, Ghurye J, Rhie A, Phillippy AM, Rosen BD, Bickhart DM, Smith TPL, Hiendleder S, Williams JL. New insights into mammalian sex chromosome structure and evolution using high-quality sequences from bovine X and Y chromosomes. Bmc Genomics. 20: 1000. PMID 31856728 DOI: 10.1186/S12864-019-6364-Z  0.316
2019 Ondov BD, Starrett GJ, Sappington A, Kostic A, Koren S, Buck CB, Phillippy AM. Mash Screen: high-throughput sequence containment estimation for genome discovery. Genome Biology. 20: 232. PMID 31690338 DOI: 10.1186/S13059-019-1841-X  0.558
2019 Ghurye J, Rhie A, Walenz BP, Schmitt A, Selvaraj S, Pop M, Phillippy AM, Koren S. Integrating Hi-C links with assembly graphs for chromosome-scale assembly. Plos Computational Biology. 15: e1007273. PMID 31433799 DOI: 10.1371/Journal.Pcbi.1007273  0.503
2019 Wenger AM, Peluso P, Rowell WJ, Chang PC, Hall RJ, Concepcion GT, Ebler J, Fungtammasan A, Kolesnikov A, Olson ND, Töpfer A, Alonge M, Mahmoud M, Qian Y, Chin CS, ... ... Koren S, et al. Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome. Nature Biotechnology. PMID 31406327 DOI: 10.1038/S41587-019-0217-9  0.575
2019 Bickhart DM, Watson M, Koren S, Panke-Buisse K, Cersosimo LM, Press MO, Van Tassell CP, Van Kessel JAS, Haley BJ, Kim SW, Heiner C, Suen G, Bakshy K, Liachko I, Sullivan ST, et al. Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation. Genome Biology. 20: 153. PMID 31375138 DOI: 10.1186/S13059-019-1760-X  0.416
2019 Dilthey AT, Jain C, Koren S, Phillippy AM. Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps. Nature Communications. 10: 3066. PMID 31296857 DOI: 10.1038/S41467-019-10934-2  0.523
2019 Chen Z, Omori Y, Koren S, Shirokiya T, Kuroda T, Miyamoto A, Wada H, Fujiyama A, Toyoda A, Zhang S, Wolfsberg TG, Kawakami K, Phillippy AM, Mullikin JC, et al. De novo assembly of the goldfish () genome and the evolution of genes after whole-genome duplication. Science Advances. 5: eaav0547. PMID 31249862 DOI: 10.1126/Sciadv.Aav0547  0.562
2019 Ghurye J, Koren S, Small ST, Redmond S, Howell P, Phillippy AM, Besansky NJ. A chromosome-scale assembly of the major African malaria vector Anopheles funestus. Gigascience. 8. PMID 31157884 DOI: 10.1093/Gigascience/Giz063  0.411
2019 Dilthey AT, Mentzer AJ, Carapito R, Cutland C, Cereb N, Madhi SA, Rhie A, Koren S, Bahram S, McVean G, Phillippy AM. HLA*LA - HLA typing from linearly projected graph alignments. Bioinformatics (Oxford, England). PMID 30942877 DOI: 10.1093/Bioinformatics/Btz235  0.412
2019 Koren S, Phillippy AM, Simpson JT, Loman NJ, Loose M. Reply to 'Errors in long-read assemblies can critically affect protein prediction'. Nature Biotechnology. PMID 30670797 DOI: 10.1038/S41587-018-0005-Y  0.316
2018 Matthews BJ, Dudchenko O, Kingan SB, Koren S, Antoshechkin I, Crawford JE, Glassford WJ, Herre M, Redmond SN, Rose NH, Weedall GD, Wu Y, Batra SS, Brito-Sierra CA, Buckingham SD, et al. Improved reference genome of Aedes aegypti informs arbovirus vector control. Nature. PMID 30429615 DOI: 10.1038/S41586-018-0692-Z  0.498
2018 Jain C, Koren S, Dilthey A, Phillippy AM, Aluru S. A fast adaptive algorithm for computing whole-genome homology maps. Bioinformatics (Oxford, England). 34: i748-i756. PMID 30423094 DOI: 10.1093/Bioinformatics/Bty597  0.53
2018 Nasko DJ, Koren S, Phillippy AM, Treangen TJ. RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification. Genome Biology. 19: 165. PMID 30373669 DOI: 10.1186/S13059-018-1554-6  0.399
2018 Koren S, Rhie A, Walenz BP, Dilthey AT, Bickhart DM, Kingan SB, Hiendleder S, Williams JL, Smith TPL, Phillippy AM. De novo assembly of haplotype-resolved genomes with trio binning. Nature Biotechnology. PMID 30346939 DOI: 10.1038/Nbt.4277  0.603
2018 Kim JH, Dilthey AT, Nagaraja R, Lee HS, Koren S, Dudekula D, Wood Iii WH, Piao Y, Ogurtsov AY, Utani K, Noskov VN, Shabalina SA, Schlessinger D, Phillippy AM, Larionov V. Variation in human chromosome 21 ribosomal RNA genes characterized by TAR cloning and long-read sequencing. Nucleic Acids Research. PMID 29788454 DOI: 10.1093/Nar/Gky442  0.516
2018 Miller JR, Koren S, Dilley KA, Harkins DM, Stockwell TB, Shabman RS, Sutton GG. A draft genome sequence for the cell line, ISE6. F1000research. 7: 297. PMID 29707202 DOI: 10.12688/F1000Research.13635.1  0.608
2018 Jain M, Koren S, Miga KH, Quick J, Rand AC, Sasani TA, Tyson JR, Beggs AD, Dilthey AT, Fiddes IT, Malla S, Marriott H, Nieto T, O'Grady J, Olsen HE, et al. Nanopore sequencing and assembly of a human genome with ultra-long reads. Nature Biotechnology. PMID 29431738 DOI: 10.1038/Nbt.4060  0.622
2018 Miller JR, Koren S, Dilley KA, Puri V, Brown DM, Harkins DM, Thibaud-Nissen F, Rosen B, Chen XG, Tu Z, Sharakhov IV, Sharakhova MV, Sebra R, Stockwell TB, Bergman NH, et al. Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation. Gigascience. PMID 29329394 DOI: 10.1093/Gigascience/Gix135  0.382
2018 Eccles D, Chandler J, Camberis M, Henrissat B, Koren S, Le Gros G, Ewbank JJ. De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads. Bmc Biology. 16: 6. PMID 29325570 DOI: 10.1186/S12915-017-0473-4  0.576
2017 Schmidt MH, Vogel A, Denton AK, Istace B, Wormit A, van de Geest H, Bolger ME, Alseekh S, Maß J, Pfaff C, Schurr U, Chetelat RT, Maumus F, Aury JM, Koren S, et al. De novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing. The Plant Cell. PMID 29025960 DOI: 10.1105/Tpc.17.00521  0.607
2017 Olson ND, Treangen TJ, Hill CM, Cepeda-Espinoza V, Ghurye J, Koren S, Pop M. Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes. Briefings in Bioinformatics. PMID 28968737 DOI: 10.1093/Bib/Bbx098  0.585
2017 Venkateswaran K, Checinska Sielaff A, Ratnayake S, Pope RK, Blank TE, Stepanov VG, Fox GE, van Tongeren SP, Torres C, Allen J, Jaing C, Pierson D, Perry J, Koren S, Phillippy A, et al. Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station. Genome Announcements. 5. PMID 28798168 DOI: 10.1128/Genomea.00680-17  0.353
2017 Ghurye J, Pop M, Koren S, Bickhart D, Chin CS. Scaffolding of long read assemblies using long range contact information. Bmc Genomics. 18: 527. PMID 28701198 DOI: 10.1186/S12864-017-3879-Z  0.474
2017 Wilson WH, Gilg IC, Moniruzzaman M, Field EK, Koren S, LeCleir GR, Martínez Martínez J, Poulton NJ, Swan BK, Stepanauskas R, Wilhelm SW. Genomic exploration of individual giant ocean viruses. The Isme Journal. PMID 28498373 DOI: 10.1038/Ismej.2017.61  0.424
2017 Schneider VA, Graves-Lindsay T, Howe K, Bouk N, Chen HC, Kitts PA, Murphy TD, Pruitt KD, Thibaud-Nissen F, Albracht D, Fulton RS, Kremitzki M, Magrini V, Markovic C, McGrath S, ... ... Koren S, et al. Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly. Genome Research. PMID 28396521 DOI: 10.1101/Gr.213611.116  0.617
2017 Koren S, Walenz BP, Berlin K, Miller JR, Bergman NH, Phillippy AM. Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation. Genome Research. PMID 28298431 DOI: 10.1101/Gr.215087.116  0.607
2017 Bickhart DM, Rosen BD, Koren S, Sayre BL, Hastie AR, Chan S, Lee J, Lam ET, Liachko I, Sullivan ST, Burton JN, Huson HJ, Nystrom JC, Kelley CM, Hutchison JL, et al. Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome. Nature Genetics. PMID 28263316 DOI: 10.1038/Ng.3802  0.57
2017 Schwartz JC, Gibson MS, Heimeier D, Koren S, Phillippy AM, Bickhart DM, Smith TP, Medrano JF, Hammond JA. The evolution of the natural killer complex; a comparison between mammals using new high-quality genome assemblies and targeted annotation. Immunogenetics. PMID 28180967 DOI: 10.1007/S00251-017-0973-Y  0.44
2017 Zimin AV, Puiu D, Luo MC, Zhu T, Koren S, Marcais G, Yorke JA, Dvorak J, Salzberg SL. Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the mega-reads algorithm. Genome Research. PMID 28130360 DOI: 10.1101/Gr.213405.116  0.583
2017 Ghurye J, Pop M, Koren S, Bickhart D, Chin C. Chromosome scale de novo assembly of genomes using chromatin interaction data F1000research. 6. DOI: 10.7490/F1000Research.1114160.1  0.472
2017 Olson ND, Hill CM, Cepeda-Espinoza V, Ghurye J, Koren S, Treangen TJ, Pop M. Metagenomic assembly through the lens of validation: a review of recent advances in assessing and improving the quality of genes and genomes assembled from metagenomes. Briefings in Bioinformatics. DOI: 10.1002/Https://Doi.Org/10.1093/Bib/Bbx098  0.5
2016 Davison M, Treangen TJ, Koren S, Pop M, Bhaya D. Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers. Plos One. 11: e0160574. PMID 27611571 DOI: 10.1371/Journal.Pone.0160574  0.409
2016 Ondov BD, Treangen TJ, Melsted P, Mallonee AB, Bergman NH, Koren S, Phillippy AM. Mash: fast genome and metagenome distance estimation using MinHash. Genome Biology. 17: 132. PMID 27323842 DOI: 10.1186/S13059-016-0997-X  0.447
2016 Liu Z, Liu S, Yao J, Bao L, Zhang J, Li Y, Jiang C, Sun L, Wang R, Zhang Y, Zhou T, Zeng Q, Fu Q, Gao S, Li N, ... Koren S, et al. The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts. Nature Communications. 7: 11757. PMID 27249958 DOI: 10.1038/Ncomms11757  0.541
2016 Hall AB, Papathanos PA, Sharma A, Cheng C, Akbari OS, Assour L, Bergman NH, Cagnetti A, Crisanti A, Dottorini T, Fiorentini E, Galizi R, Hnath J, Jiang X, Koren S, et al. Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes. Proceedings of the National Academy of Sciences of the United States of America. PMID 27035980 DOI: 10.1073/Pnas.1525164113  0.415
2016 Gulia-Nuss M, Nuss AB, Meyer JM, Sonenshine DE, Roe RM, Waterhouse RM, Sattelle DB, de la Fuente J, Ribeiro JM, Megy K, Thimmapuram J, Miller JR, Walenz BP, Koren S, Hostetler JB, et al. Genomic insights into the Ixodes scapularis tick vector of Lyme disease. Nature Communications. 7: 10507. PMID 26856261 DOI: 10.1038/Ncomms10507  0.439
2015 Berlin K, Koren S, Chin CS, Drake JP, Landolin JM, Phillippy AM. Corrigendum: Assembling large genomes with single-molecule sequencing and locality-sensitive hashing. Nature Biotechnology. 33: 1109. PMID 26448093 DOI: 10.1038/Nbt1015-1109C  0.416
2015 Berlin K, Koren S, Chin CS, Drake JP, Landolin JM, Phillippy AM. Assembling large genomes with single-molecule sequencing and locality-sensitive hashing. Nature Biotechnology. 33: 623-30. PMID 26006009 DOI: 10.1038/Nbt.3238  0.636
2015 Labonté JM, Swan BK, Poulos B, Luo H, Koren S, Hallam SJ, Sullivan MB, Woyke T, Eric Wommack K, Stepanauskas R. Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton. The Isme Journal. PMID 25848873 DOI: 10.1038/Ismej.2015.48  0.454
2015 Johnson SL, Baker AL, Chain PS, Currie BJ, Daligault HE, Davenport KW, Davis CB, Inglis TJ, Kaestli M, Koren S, Mayo M, Merritt AJ, Price EP, Sarovich DS, Warner J, et al. Whole-Genome Sequences of 80 Environmental and Clinical Isolates of Burkholderia pseudomallei. Genome Announcements. 3. PMID 25676747 DOI: 10.1128/Genomea.01282-14  0.505
2015 Koren S, Phillippy AM. One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly. Current Opinion in Microbiology. 23: 110-20. PMID 25461581 DOI: 10.1016/J.Mib.2014.11.014  0.623
2014 Treangen TJ, Ondov BD, Koren S, Phillippy AM. The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes. Genome Biology. 15: 524. PMID 25410596 DOI: 10.1186/S13059-014-0524-X  0.585
2014 Treangen TJ, Maybank RA, Enke S, Friss MB, Diviak LF, Karaolis DK, Koren S, Ondov B, Phillippy AM, Bergman NH, Rosovitz MJ. Complete Genome Sequence of the Quality Control Strain Staphylococcus aureus subsp. aureus ATCC 25923. Genome Announcements. 2. PMID 25377701 DOI: 10.1128/Genomea.01110-14  0.419
2014 Ganapathy G, Howard JT, Ward JM, Li J, Li B, Li Y, Xiong Y, Zhang Y, Zhou S, Schwartz DC, Schatz M, Aboukhalil R, Fedrigo O, Bukovnik L, Wang T, ... ... Koren S, et al. High-coverage sequencing and annotated assemblies of the budgerigar genome. Gigascience. 3: 11. PMID 25061512 DOI: 10.1186/2047-217X-3-11  0.536
2014 Koren S, Treangen TJ, Hill CM, Pop M, Phillippy AM. Automated ensemble assembly and validation of microbial genomes. Bmc Bioinformatics. 15: 126. PMID 24884846 DOI: 10.1186/1471-2105-15-126  0.617
2014 Swan BK, Chaffin MD, Martinez-Garcia M, Morrison HG, Field EK, Poulton NJ, Masland ED, Harris CC, Sczyrba A, Chain PS, Koren S, Woyke T, Stepanauskas R. Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres. Plos One. 9: e95380. PMID 24743558 DOI: 10.1371/Journal.Pone.0095380  0.436
2014 Harhay GP, Murray RW, Lubbers B, Griffin D, Koren S, Phillippy AM, Harhay DM, Bono J, Clawson ML, Heaton MP, Chitko-McKown CG, Smith TP. Complete Closed Genome Sequences of Four Mannheimia varigena Isolates from Cattle with Shipping Fever. Genome Announcements. 2. PMID 24526648 DOI: 10.1128/Genomea.00088-14  0.57
2014 Harhay GP, McVey DS, Koren S, Phillippy AM, Bono J, Harhay DM, Clawson ML, Heaton MP, Chitko-McKown CG, Korlach J, Smith TP. Complete Closed Genome Sequences of Three Bibersteinia trehalosi Nasopharyngeal Isolates from Cattle with Shipping Fever. Genome Announcements. 2. PMID 24526647 DOI: 10.1128/Genomea.00084-14  0.536
2013 Koren S, Harhay GP, Smith TP, Bono JL, Harhay DM, Mcvey SD, Radune D, Bergman NH, Phillippy AM. Reducing assembly complexity of microbial genomes with single-molecule sequencing. Genome Biology. 14: R101. PMID 24034426 DOI: 10.1186/Gb-2013-14-9-R101  0.591
2013 Ghodsi M, Hill CM, Astrovskaya I, Lin H, Sommer DD, Koren S, Pop M. De novo likelihood-based measures for comparing genome assemblies. Bmc Research Notes. 6: 334. PMID 23965294 DOI: 10.1186/1756-0500-6-334  0.634
2013 Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, ... ... Koren S, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2: 10. PMID 23870653 DOI: 10.1186/2047-217X-2-10  0.638
2013 Harhay GP, Koren S, Phillippy AM, McVey DS, Kuszak J, Clawson ML, Harhay DM, Heaton MP, Chitko-McKown CG, Smith TP. Complete Closed Genome Sequences of Mannheimia haemolytica Serotypes A1 and A6, Isolated from Cattle. Genome Announcements. 1. PMID 23682137 DOI: 10.1128/Genomea.00188-13  0.491
2013 Treangen TJ, Koren S, Sommer DD, Liu B, Astrovskaya I, Ondov B, Darling AE, Phillippy AM, Pop M. MetAMOS: a modular and open source metagenomic assembly and analysis pipeline. Genome Biology. 14: R2. PMID 23320958 DOI: 10.1186/Gb-2013-14-1-R2  0.548
2013 Vacek G, Hornung B, Bolding J, Koren S. Accelerating error correction and assembly of single-molecule sequencing reads F1000research. 4. DOI: 10.7490/F1000Research.1093938.1  0.439
2012 Koren S, Schatz MC, Walenz BP, Martin J, Howard JT, Ganapathy G, Wang Z, Rasko DA, McCombie WR, Jarvis ED, Adam M Phillippy. Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nature Biotechnology. 30: 693-700. PMID 22750884 DOI: 10.1038/Nbt.2280  0.59
2012 Prüfer K, Munch K, Hellmann I, Akagi K, Miller JR, Walenz B, Koren S, Sutton G, Kodira C, Winer R, Knight JR, Mullikin JC, Meader SJ, Ponting CP, Lunter G, et al. The bonobo genome compared with the chimpanzee and human genomes. Nature. 486: 527-31. PMID 22722832 DOI: 10.1038/Nature11128  0.521
2012 Salzberg SL, Phillippy AM, Zimin A, Puiu D, Magoc T, Koren S, Treangen TJ, Schatz MC, Delcher AL, Roberts M, Marçais G, Pop M, Yorke JA. GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome Research. 22: 557-67. PMID 22147368 DOI: 10.1101/Gr.131383.111  0.639
2011 Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, ... ... Koren S, et al. Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Research. 21: 2224-41. PMID 21926179 DOI: 10.1101/Gr.126599.111  0.59
2011 Koren S, Treangen TJ, Pop M. Bambus 2: scaffolding metagenomes. Bioinformatics (Oxford, England). 27: 2964-71. PMID 21926123 DOI: 10.1093/Bioinformatics/Btr520  0.423
2011 Treangen TJ, Sommer DD, Angly FE, Koren S, Pop M. Next generation sequence assembly with AMOS. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 11.8. PMID 21400694 DOI: 10.1002/0471250953.Bi1108S33  0.554
2011 Koren S, Treangen T, Pop M. ScaffViz: visualizing metagenome assemblies Genome Biology. 12: P8. DOI: 10.1186/Gb-2011-12-S1-P8  0.302
2011 Treangen TJ, Koren S, Astrovskaya I, Sommer D, Liu B, Pop M. MetAMOS: a metagenomic assembly and analysis pipeline for AMOS Genome Biology. 12: P25. DOI: 10.1186/Gb-2011-12-S1-P25  0.412
2010 Koren S, Miller JR, Walenz BP, Sutton G. An algorithm for automated closure during assembly. Bmc Bioinformatics. 11: 457. PMID 20831800 DOI: 10.1186/1471-2105-11-457  0.542
2010 Miller JR, Koren S, Sutton G. Assembly algorithms for next-generation sequencing data. Genomics. 95: 315-27. PMID 20211242 DOI: 10.1016/J.Ygeno.2010.03.001  0.545
2009 Rausch T, Koren S, Denisov G, Weese D, Emde AK, Döring A, Reinert K. A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads. Bioinformatics (Oxford, England). 25: 1118-24. PMID 19269990 DOI: 10.1093/Bioinformatics/Btp131  0.522
2008 Miller JR, Delcher AL, Koren S, Venter E, Walenz BP, Brownley A, Johnson J, Li K, Mobarry C, Sutton G. Aggressive assembly of pyrosequencing reads with mates. Bioinformatics (Oxford, England). 24: 2818-24. PMID 18952627 DOI: 10.1093/Bioinformatics/Btn548  0.565
Low-probability matches (unlikely to be authored by this person)
2012 Price EP, Seymour ML, Sarovich DS, Latham J, Wolken SR, Mason J, Vincent G, Drees KP, Beckstrom-Sternberg SM, Phillippy AM, Koren S, Okinaka RT, Chung WK, Schupp JM, Wagner DM, et al. Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe. Emerging Infectious Diseases. 18: 1307-13. PMID 22840345 DOI: 10.3201/Eid1808.111343  0.291
2018 Pishchany G, Mevers E, Ndousse-Fetter S, Horvath DJ, Paludo CR, Silva-Junior EA, Koren S, Skaar EP, Clardy J, Kolter R. Amycomicin is a potent and specific antibiotic discovered with a targeted interaction screen. Proceedings of the National Academy of Sciences of the United States of America. PMID 30228116 DOI: 10.1073/Pnas.1807613115  0.274
2018 Jain C, Dilthey A, Koren S, Aluru S, Phillippy AM. A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 29708767 DOI: 10.1089/cmb.2018.0036  0.272
2024 Schnitzler CE, Chang ES, Waletich J, Quiroga-Artigas G, Wong WY, Nguyen AD, Barreira S, Doonan LB, Gonzalez P, Koren S, Gahan J, Sanders S, Bradshaw B, DuBuc T, Febrimarsa F, et al. The genome of the colonial hydroid reveals their stem cells utilize a toolkit of evolutionarily shared genes with all animals. Genome Research. PMID 38508693 DOI: 10.1101/gr.278382.123  0.272
2023 Schnitzler CE, Chang ES, Waletich J, Quiroga-Artigas G, Wong WY, Nguyen AD, Barreira SN, Doonan L, Gonzalez P, Koren S, Gahan JM, Sanders SM, Bradshaw B, DuBuc TQ, de Jong D, et al. The genome of the colonial hydroid reveals their stem cells utilize a toolkit of evolutionarily shared genes with all animals. Biorxiv : the Preprint Server For Biology. PMID 37786714 DOI: 10.1101/2023.08.25.554815  0.272
2020 Moser KA, Drábek EF, Dwivedi A, Stucke EM, Crabtree J, Dara A, Shah Z, Adams M, Li T, Rodrigues PT, Koren S, Phillippy AM, Munro JB, Ouattara A, Sparklin BC, et al. Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential. Genome Medicine. 12: 6. PMID 31915075 DOI: 10.1186/S13073-019-0708-9  0.265
2023 Makova KD, Pickett BD, Harris RS, Hartley GA, Cechova M, Pal K, Nurk S, Yoo D, Li Q, Hebbar P, McGrath BC, Antonacci F, Aubel M, Biddanda A, Borchers M, ... ... Koren S, et al. The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes. Biorxiv : the Preprint Server For Biology. PMID 38077089 DOI: 10.1101/2023.11.30.569198  0.257
2020 Zook JM, Hansen NF, Olson ND, Chapman L, Mullikin JC, Xiao C, Sherry S, Koren S, Phillippy AM, Boutros PC, Sahraeian SME, Huang V, Rouette A, Alexander N, Mason CE, et al. Author Correction: A robust benchmark for detection of germline large deletions and insertions. Nature Biotechnology. PMID 32699374 DOI: 10.1038/S41587-020-0640-Y  0.232
1999 Cencic A, LeFèvre F, Koren S, La Bonnardière C. Tetracycline-controlled expression of glycosylated porcine interferon-gamma in mammalian cells. Animal Biotechnology. 10: 63-79. PMID 10654431 DOI: 10.1080/10495399909525922  0.199
2022 Huene AL, Sanders SM, Ma Z, Nguyen AD, Koren S, Michaca MH, Mullikin JC, Phillippy AM, Schnitzler CE, Baxevanis AD, Nicotra ML. A family of unusual immunoglobulin superfamily genes in an invertebrate histocompatibility complex. Proceedings of the National Academy of Sciences of the United States of America. 119: e2207374119. PMID 36161920 DOI: 10.1073/pnas.2207374119  0.194
2008 Koren S, Kosmac M, Colja Venturini A, Montanic S, Curin Serbec V. Antibody variable-region sequencing as a method for hybridoma cell-line authentication. Applied Microbiology and Biotechnology. 78: 1071-8. PMID 18320189 DOI: 10.1007/s00253-008-1386-5  0.172
2003 Booth JN, Koren SA, Persinger MA. Increased proportions of sensed presences and occipital spikes with 1- and 10-msec. point duration of continuous 7-Hz transcerebral magnetic fields. Perceptual and Motor Skills. 97: 951-2. PMID 14738362 DOI: 10.2466/pms.2003.97.3.951  0.102
2002 Cencic A, Henry C, Lefèvre F, Huet JC, Koren S, La Bonnardière C. The porcine trophoblastic interferon-gamma, secreted by a polarized epithelium, has specific structural and biochemical properties. European Journal of Biochemistry / Febs. 269: 2772-81. PMID 12047387 DOI: 10.1046/J.1432-1033.2002.02950.X  0.1
2007 Ivec M, Boti? T, Koren S, Jakobsen M, Weingartl H, Cencic A. Interactions of macrophages with probiotic bacteria lead to increased antiviral response against vesicular stomatitis virus. Antiviral Research. 75: 266-74. PMID 17512614 DOI: 10.1016/J.Antiviral.2007.03.013  0.086
2009 Tsang EW, Koren SA, Persinger MA. Specific patterns of weak (1 microTesla) transcerebral complex magnetic fields differentially affect depression, fatigue, and confusion in normal volunteers. Electromagnetic Biology and Medicine. 28: 365-73. PMID 20017627 DOI: 10.3109/15368370903206630  0.083
2002 Koren SA, Persinger MA. Possible disruption of remote viewing by complex weak magnetic fields around the stimulus site and the possibility of accessing real phase space: a pilot study. Perceptual and Motor Skills. 95: 989-98. PMID 12509207 DOI: 10.2466/pms.2002.95.3.989  0.065
2010 Mijovski JZ, Poljsak-Prijatelj M, Steyer A, Barlic-Maganja D, Koren S. Detection and molecular characterisation of noroviruses and sapoviruses in asymptomatic swine and cattle in Slovenian farms. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 10: 413-20. PMID 19931649 DOI: 10.1016/j.meegid.2009.11.010  0.063
2002 Filipic B, Shehata M, Toth S, Schwarzmeier J, Koren S. Novel serum replacement based on bovine ocular fluid: a useful tool for cultivation of different animal cells in vitro. Altex. 19: 15-20. PMID 11927978  0.061
2002 Persinger MA, Roll WG, Tiller SG, Koren SA, Cook CM. Remote viewing with the artist Ingo Swann: neuropsychological profile, electroencephalographic correlates, magnetic resonance imaging (MRI), and possible mechanisms. Perceptual and Motor Skills. 94: 927-49. PMID 12081299 DOI: 10.2466/pms.2002.94.3.927  0.06
2007 Fijan S, Koren S, Cencic A, Sostar-Turk S. Antimicrobial disinfection effect of a laundering procedure for hospital textiles against various indicator bacteria and fungi using different substrates for simulating human excrements. Diagnostic Microbiology and Infectious Disease. 57: 251-7. PMID 17046191 DOI: 10.1016/J.Diagmicrobio.2006.08.020  0.059
2010 Persinger MA, Saroka KS, Lavallee CF, Booth JN, Hunter MD, Mulligan BP, Koren SA, Wu HP, Gang N. Correlated cerebral events between physically and sensory isolated pairs of subjects exposed to yoked circumcerebral magnetic fields. Neuroscience Letters. 486: 231-4. PMID 20887774 DOI: 10.1016/j.neulet.2010.09.060  0.058
2007 Persinger MA, Koren SA. A theory of neurophysics and quantum neuroscience: implications for brain function and the limits of consciousness. The International Journal of Neuroscience. 117: 157-75. PMID 17365106 DOI: 10.1080/00207450500535784  0.058
2007 Cukjati M, Koren S, Curin Serbec V, Vidan-Jeras B, Rupreht R. A novel homozygous frameshift deletion c.471del of HFE associated with hemochromatosis. Clinical Genetics. 71: 350-3. PMID 17470136 DOI: 10.1111/j.1399-0004.2007.00777.x  0.057
2011 Kosma? M, Koren S, Giachin G, Stoilova T, Gennaro R, Legname G, Serbec V?. Epitope mapping of a PrP(Sc)-specific monoclonal antibody: identification of a novel C-terminally truncated prion fragment. Molecular Immunology. 48: 746-50. PMID 21176851 DOI: 10.1016/j.molimm.2010.11.012  0.057
2013 Steyer A, Gutiérrez-Aguire I, Kolenc M, Koren S, Kutnjak D, Pokorn M, Poljšak-Prijatelj M, Racki N, Ravnikar M, Sagadin M, Fratnik Steyer A, Toplak N. High similarity of novel orthoreovirus detected in a child hospitalized with acute gastroenteritis to mammalian orthoreoviruses found in bats in Europe. Journal of Clinical Microbiology. 51: 3818-25. PMID 24025904 DOI: 10.1128/JCM.01531-13  0.055
2001 Persinger MA, St-Pierre LS, Koren SA. Geophysical variables and behavior: XCI. Ambulatory behavior in rats following prenatal exposures to complex magnetic fields designed to interact with genetic expression. Perceptual and Motor Skills. 92: 183-92. PMID 11322585 DOI: 10.2466/pms.2001.92.1.183  0.053
2005 Booth JN, Koren SA, Persinger MA. Increased feelings of the sensed presence and increased geomagnetic activity at the time of the experience during exposures to transcerebral weak complex magnetic fields. The International Journal of Neuroscience. 115: 1053-79. PMID 16051550 DOI: 10.1080/00207450590901521  0.048
1999 Persinger MA, Cook LL, Koren SA. Suppression of Experimental Allergic Encephalomyelitis in Rats Exposed Nocturnally to Magnetic Fields. The International Journal of Neuroscience. 100: 107-116. PMID 10938555 DOI: 10.3109/00207450008999681  0.046
2004 Tsang EW, Koren SA, Persinger MA. Electrophysiological and quantitative electroencephalographic measurements after treatment by transcerebral magnetic fields generated by compact disc through a computer sound card: the Shakti treatment. The International Journal of Neuroscience. 114: 1013-24. PMID 15527205 DOI: 10.1080/00207450490461323  0.045
2013 Dvorakova E, Vranac T, Janouskova O, ?ernilec M, Koren S, Lukan A, Nováková J, Matej R, Holada K, ?urin Šerbec V. Detection of the GPI-anchorless prion protein fragment PrP226* in human brain. Bmc Neurology. 13: 126. PMID 24063733 DOI: 10.1186/1471-2377-13-126  0.044
2002 Richards MA, Koren SA, Persinger MA. Circumcerebral application of weak complex magnetic fields with derivatives and changes in electroencephalographic power spectra within the theta range: implications for states of consciousness. Perceptual and Motor Skills. 95: 671-86. PMID 12434867 DOI: 10.2466/pms.2002.95.2.671  0.044
2003 Cencic A, Guillomot M, Koren S, La Bonnardière C. Trophoblastic interferons: do they modulate uterine cellular markers at the time of conceptus attachment in the pig? Placenta. 24: 862-9. PMID 13129683 DOI: 10.1016/S0143-4004(03)00135-8  0.043
2015 Buckner CA, Buckner AL, Koren SA, Persinger MA, Lafrenie RM. Inhibition of cancer cell growth by exposure to a specific time-varying electromagnetic field involves T-type calcium channels. Plos One. 10: e0124136. PMID 25875081 DOI: 10.1371/journal.pone.0124136  0.043
2008 Booth JN, Koren SA, Persinger MA. Increased theta activity in quantitative electroencephalographic (QEEG) measurements during exposure to complex weak magnetic fields. Electromagnetic Biology and Medicine. 27: 426-36. PMID 19037792 DOI: 10.1080/15368370802493719  0.042
2008 Ross ML, Koren SA, Persinger MA. Physiologically patterned weak magnetic fields applied over left frontal lobe increase acceptance of false statements as true. Electromagnetic Biology and Medicine. 27: 365-71. PMID 19037785 DOI: 10.1080/15368370802493545  0.042
2006 Fijan S, Poljsak-Prijatelj M, Steyer A, Koren S, Cencic A, Sostar-Turk S. Rotaviral RNA found in wastewaters from hospital laundry. International Journal of Hygiene and Environmental Health. 209: 97-102. PMID 16373207 DOI: 10.1016/J.Ijheh.2005.08.003  0.042
2001 Banic S, Koren S, Tomazic J, Vidmar L, Ihan A, Poljak M, Avsic-Zupanc A. Influenza vaccination of human immunodeficiency virus 1-infected patients receiving antiretroviral therapy. Acta Virologica. 45: 39-44. PMID 11394576  0.041
2011 Lavallee CF, Koren SA, Persinger MA. A quantitative electroencephalographic study of meditation and binaural beat entrainment. Journal of Alternative and Complementary Medicine (New York, N.Y.). 17: 351-5. PMID 21480784 DOI: 10.1089/acm.2009.0691  0.04
2013 Lin MH, Koren S, Veltchev I, Li J, Wang L, Price RA, Ma CM. Measurement comparison and Monte Carlo analysis for volumetric-modulated arc therapy (VMAT) delivery verification using the ArcCHECK dosimetry system. Journal of Applied Clinical Medical Physics / American College of Medical Physics. 14: 3929. PMID 23470927 DOI: 10.1120/jacmp.v14i2.3929  0.04
2000 Persinger MA, Tiller SG, Koren SA. Experimental simulation of a haunt experience and elicitation of paroxysmal electroencephalographic activity by transcerebral complex magnetic fields: induction of a synthetic "ghost"? Perceptual and Motor Skills. 90: 659-74. PMID 10833767 DOI: 10.2466/pms.2000.90.2.659  0.04
2008 Fijan S, Steyer A, Poljsak-Prijatelj M, Cencic A, Sostar-Turk S, Koren S. Rotaviral RNA found on various surfaces in a hospital laundry. Journal of Virological Methods. 148: 66-73. PMID 18061282 DOI: 10.1016/J.Jviromet.2007.10.011  0.039
2013 Slater RA, Koren S, Ramot Y, Buchs A, Rapoport MJ. Pilot study on the significance of random intrasite placement of the Semmes-Weinstein monofilament. Diabetes/Metabolism Research and Reviews. 29: 235-8. PMID 23283830 DOI: 10.1002/dmrr.2388  0.038
2001 Persinger MA, Koren SA, O'Connor RP. Geophysical variables and behavior: CIV. Power-frequency magnetic field transients (5 microtesla) and reports of haunt experiences within an electronically dense house. Perceptual and Motor Skills. 92: 673-4. PMID 11453191 DOI: 10.2466/pms.2001.92.3.673  0.038
2014 Price RA, Koren S, Veltchev I, Hossain M, Lin MH, Galloway T, Flanagan P, Haber J, Ma CM. Planning target volume-to-skin proximity for head-and-neck intensity modulated radiation therapy treatment planning. Practical Radiation Oncology. 4: e21-9. PMID 24621428 DOI: 10.1016/J.Prro.2013.04.002  0.038
2014 Slater RA, Koren S, Ramot Y, Buchs A, Rapoport MJ. Interpreting the results of the Semmes-Weinstein monofilament test: accounting for false-positive answers in the international consensus on the diabetic foot protocol by a new model. Diabetes/Metabolism Research and Reviews. 30: 77-80. PMID 23996640 DOI: 10.1002/dmrr.2465  0.038
2000 Cook LL, Persinger MA, Koren SA. Differential effects of low frequency, low intensity (<6 mG) nocturnal magnetic fields upon infiltration of mononuclear cells and numbers of mast cells in Lewis rat brains. Toxicology Letters. 118: 9-19. PMID 11137304 DOI: 10.1016/S0378-4274(00)00259-9  0.036
2004 Tsang EW, Koren SA, Persinger MA. Power increases within the gamma range over the frontal and occipital regions during acute exposures to cerebrally counterclockwise rotating magnetic fields with specific derivatives of change. The International Journal of Neuroscience. 114: 1183-93. PMID 15370182 DOI: 10.1080/00207450490475643  0.036
2004 Martin LJ, Koren SA, Persinger MA. Influence of a complex magnetic field application in rats upon thermal nociceptive thresholds: the importance of polarity and timing. The International Journal of Neuroscience. 114: 1259-76. PMID 15370185 DOI: 10.1080/00207450490475689  0.034
2000 McKay BE, Persinger MA, Koren SA. Exposure to a theta-burst patterned magnetic field impairs memory acquisition and consolidation for contextual but not discrete conditioned fear in rats. Neuroscience Letters. 292: 99-102. PMID 10998558 DOI: 10.1016/S0304-3940(00)01437-3  0.034
2001 Persinger MA, Koren SA. Experiences of spiritual visitation and impregnation: potential induction by frequency-modulated transients from an adjacent clock. Perceptual and Motor Skills. 92: 35-6. PMID 11322603 DOI: 10.2466/pms.2001.92.1.35  0.033
2009 Masson E, Koren S, Razik F, Goldberg H, Kwan EP, Sheu L, Gaisano HY, Fantus IG. High beta-cell mass prevents streptozotocin-induced diabetes in thioredoxin-interacting protein-deficient mice. American Journal of Physiology. Endocrinology and Metabolism. 296: E1251-61. PMID 19223654 DOI: 10.1152/Ajpendo.90619.2008  0.032
2007 St-Pierre LS, Koren SA, Persinger MA. Ambulatory effects of brief exposures to magnetic fields changing orthogonally in space over time. The International Journal of Neuroscience. 117: 417-20. PMID 17365125 DOI: 10.1080/00207450600592214  0.032
2014 Koren S, Rapoport MJ. Aiming for better glucose control: is HbA(1c) of 7% the 'holy grail'? The clinical approach or seven clinical questions about 7. Diabetes/Metabolism Research and Reviews. 30: 346-9. PMID 24510443 DOI: 10.1002/dmrr.2532  0.032
2011 Christov M, Koren S, Yuan Q, Baron R, Lanske B. Genetic ablation of sfrp4 in mice does not affect serum phosphate homeostasis. Endocrinology. 152: 2031-6. PMID 21427221 DOI: 10.1210/En.2010-1351  0.031
2015 Koren S, DiPilato LM, Emmett MJ, Shearin AL, Chu Q, Monks B, Birnbaum MJ. The role of mouse Akt2 in insulin-dependent suppression of adipocyte lipolysis in vivo. Diabetologia. 58: 1063-70. PMID 25740694 DOI: 10.1007/S00125-015-3532-9  0.031
2012 Karbowski LM, Harribance SL, Buckner CA, Mulligan BP, Koren SA, Lafrenie RM, Persinger MA. Digitized quantitative electroencephalographic patterns applied as magnetic fields inhibit melanoma cell proliferation in culture. Neuroscience Letters. 523: 131-4. PMID 22750152 DOI: 10.1016/j.neulet.2012.06.059  0.029
2013 Meyer DS, Koren S, Leroy C, Brinkhaus H, Müller U, Klebba I, Müller M, Cardiff RD, Bentires-Alj M. Expression of PIK3CA mutant E545K in the mammary gland induces heterogeneous tumors but is less potent than mutant H1047R. Oncogenesis. 2: e74. PMID 24080956 DOI: 10.1038/oncsis.2013.38  0.029
2003 McKay BE, Koren SA, Persinger MA. Behavioral effects of combined perinatal L-NAME and 0.5 Hz magnetic field treatments. The International Journal of Neuroscience. 113: 119-39. PMID 12691004 DOI: 10.1080/00207450390161958  0.028
2007 Cernilec M, Vranac T, Hafner-Bratkovic I, Koren S, Venturini AC, Popovi? M, Juntes P, Serbec VC. Identification of an epitope on the recombinant bovine PrP that is able to elicit a prominent immune response in wild-type mice. Immunology Letters. 113: 29-39. PMID 17884181 DOI: 10.1016/j.imlet.2007.07.012  0.027
2010 Khalid S, Hwang D, Babichev Y, Kolli R, Altamentova S, Koren S, Goodwin PJ, Ennis M, Pollak M, Sonenberg N, Fantus IG. Evidence for a tumor promoting effect of high-fat diet independent of insulin resistance in HER2/Neu mammary carcinogenesis. Breast Cancer Research and Treatment. 122: 647-59. PMID 19851863 DOI: 10.1007/S10549-009-0586-8  0.027
2006 Klemenc P, Marin J, Soba E, Gale N, Koren S, Strojan P. Distribution of Epstein-Barr virus genotypes in throat washings, sera, peripheral blood lymphocytes and in EBV positive tumor biopsies from Slovenian patients with nasopharyngeal carcinoma. Journal of Medical Virology. 78: 1083-90. PMID 16789009 DOI: 10.1002/jmv.20666  0.026
2005 Persinger MA, McKay BE, O'Donovan CA, Koren SA. Sudden death in epileptic rats exposed to nocturnal magnetic fields that simulate the shape and the intensity of sudden changes in geomagnetic activity: an experiment in response to Schnabel, Beblo and May. International Journal of Biometeorology. 49: 256-61. PMID 15726448 DOI: 10.1007/s00484-004-0234-2  0.024
2012 Ma CM, Lin MH, Dai XF, Koren S, Klayton T, Wang L, Li JS, Chen L, Price RA. Investigation of pulsed low dose rate radiotherapy using dynamic arc delivery techniques. Physics in Medicine and Biology. 57: 4613-26. PMID 22750648 DOI: 10.1088/0031-9155/57/14/4613  0.023
2015 Koren R, Lerner A, Tirosh A, Zaidenstein R, Ziv-Baran T, Golik A, Koren S. The Use of Complementary and Alternative Medicine in Hospitalized Patients with Type 2 Diabetes Mellitus in Israel. Journal of Alternative and Complementary Medicine (New York, N.Y.). PMID 26052873 DOI: 10.1089/acm.2015.0019  0.022
2009 Mesko Meglic K, Koren S, Palepou MF, Karisik E, Livermore DM, Pike R, Andlovic A, Jeverica S, Krizan-Hergouth V, Müller-Premru M, Seme K, Woodford N. Nationwide survey of CTX-M-type extended-spectrum beta-lactamases among Klebsiella pneumoniae isolates in Slovenian hospitals. Antimicrobial Agents and Chemotherapy. 53: 287-91. PMID 19001116 DOI: 10.1128/AAC.00746-08  0.021
2004 Martin LJ, Koren SA, Persinger MA. Thermal analgesic effects from weak, complex magnetic fields and pharmacological interactions. Pharmacology, Biochemistry, and Behavior. 78: 217-27. PMID 15219761 DOI: 10.1016/j.pbb.2004.03.016  0.021
2000 Filipic B, Kovács K, Somogyvári F, Ihan A, Ocsovszky I, Koren S, Tóth S. The effects of medium-strength electric impulses on human blood. Bioelectrochemistry (Amsterdam, Netherlands). 52: 29-36. PMID 11059574  0.02
2009 Colja Venturini A, Bresjanac M, Vranac T, Koren S, Narat M, Popovi? M, Curin Serbec V. Anti-idiotypic antibodies: a new approach in prion research. Bmc Immunology. 10: 16. PMID 19298674 DOI: 10.1186/1471-2172-10-16  0.02
2012 Koren S, Shemesh-Bar L, Tirosh A, Peleg RK, Berman S, Hamad RA, Vinker S, Golik A, Efrati S. The effect of sitagliptin versus glibenclamide on arterial stiffness, blood pressure, lipids, and inflammation in type 2 diabetes mellitus patients. Diabetes Technology & Therapeutics. 14: 561-7. PMID 22512265 DOI: 10.1089/dia.2011.0296  0.02
2013 Wan M, Leavens KF, Hunter RW, Koren S, von Wilamowitz-Moellendorff A, Lu M, Satapati S, Chu Q, Sakamoto K, Burgess SC, Birnbaum MJ. A noncanonical, GSK3-independent pathway controls postprandial hepatic glycogen deposition. Cell Metabolism. 18: 99-105. PMID 23823480 DOI: 10.1016/J.Cmet.2013.06.001  0.019
2013 Fourkal E, Veltchev I, Lin M, Koren S, Meyer J, Doss M, Yu JQ. 3D inpatient dose reconstruction from the PET-CT imaging of 90Y microspheres for metastatic cancer to the liver: feasibility study. Medical Physics. 40: 081702. PMID 23927299 DOI: 10.1118/1.4810939  0.019
2002 Chopra N, Koren S, Greer WL, Fortin PR, Rauch J, Fortin I, Senécal JL, Docherty P, Hanly JG. Factor V Leiden, prothrombin gene mutation, and thrombosis risk in patients with antiphospholipid antibodies. The Journal of Rheumatology. 29: 1683-8. PMID 12180730  0.017
2012 Lin MH, Li J, Wang L, Koren S, Fan J, Forkal E, Ma CM. 4D patient dose reconstruction using online measured EPID cine images for lung SBRT treatment validation. Medical Physics. 39: 5949-58. PMID 23039633 DOI: 10.1118/1.4748505  0.017
2003 Persinger MA, Koren SA, Tsang EW. Enhanced power within a specific band of theta activity in one person while another receives circumcerebral pulsed magnetic fields: a mechanism for cognitive influence at a distance? Perceptual and Motor Skills. 97: 877-94. PMID 14738355 DOI: 10.2466/pms.2003.97.3.877  0.016
2005 Persinger MA, Koren SA. A response to Granqvist et al. "Sensed presence and mystical experiences are predicted by suggestibility, not by the application of transcranial weak magnetic fields". Neuroscience Letters. 380: 346-7; author reply . PMID 15862915 DOI: 10.1016/j.neulet.2005.03.060  0.012
2007 Koren S, Fantus IG. Inhibition of the protein tyrosine phosphatase PTP1B: potential therapy for obesity, insulin resistance and type-2 diabetes mellitus. Best Practice & Research. Clinical Endocrinology & Metabolism. 21: 621-40. PMID 18054739 DOI: 10.1016/j.beem.2007.08.004  0.012
2013 Peleg RK, Fishlev G, Bechor Y, Bergan J, Friedman M, Koren S, Tirosh A, Efrati S. Effects of hyperbaric oxygen on blood glucose levels in patients with diabetes mellitus, stroke or traumatic brain injury and healthy volunteers: a prospective, crossover, controlled trial. Diving and Hyperbaric Medicine. 43: 218-21. PMID 24510327  0.01
2013 Koren S, Bentires-Alj M. Mouse models of PIK3CA mutations: one mutation initiates heterogeneous mammary tumors. The Febs Journal. 280: 2758-65. PMID 23384338 DOI: 10.1111/febs.12175  0.01
2010 Shrier LA, Koren S, Aneja P, de Moor C. Affect regulation, social context, and sexual intercourse in adolescents. Archives of Sexual Behavior. 39: 695-705. PMID 18818996 DOI: 10.1007/s10508-008-9394-1  0.01
2007 Sandhu C, Chesney A, Piliotis E, Buckstein R, Koren S. Macrophage activation syndrome after etanercept treatment. The Journal of Rheumatology. 34: 241-2. PMID 17216706  0.01
2000 Toren P, Wolmer L, Rosental B, Eldar S, Koren S, Lask M, Weizman R, Laor N. Case series: brief parent-child group therapy for childhood anxiety disorders using a manual-based cognitive-behavioral technique. Journal of the American Academy of Child and Adolescent Psychiatry. 39: 1309-12. PMID 11026186 DOI: 10.1097/00004583-200010000-00019  0.01
2000 Toren P, Sadeh M, Wolmer L, Eldar S, Koren S, Weizman R, Laor N. Neurocognitive correlates of anxiety disorders in children: a preliminary report. Journal of Anxiety Disorders. 14: 239-47. PMID 10868982  0.01
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