Caleb Weinreb - Publications

Affiliations: 
Harvard Medical School, Boston, MA, United States 
Area:
Computational analysis of behavior

30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Weinreb C, Osman MAM, Zhang L, Lin S, Pearl J, Annapragada S, Conlin E, Gillis WF, Jay M, Ye S, Mathis A, Mathis MW, Pereira T, Linderman SW, Datta SR. Keypoint-MoSeq: parsing behavior by linking point tracking to pose dynamics. Biorxiv : the Preprint Server For Biology. PMID 36993589 DOI: 10.1101/2023.03.16.532307  0.621
2023 Bohnslav JP, Osman MAM, Jaggi A, Soares S, Weinreb C, Datta SR, Harvey CD. ArMo: An Articulated Mesh Approach for Mouse 3D Reconstruction. Biorxiv : the Preprint Server For Biology. PMID 36824774 DOI: 10.1101/2023.02.17.526719  0.581
2023 Markowitz JE, Gillis WF, Jay M, Wood J, Harris RW, Cieszkowski R, Scott R, Brann D, Koveal D, Kula T, Weinreb C, Osman MAM, Pinto SR, Uchida N, Linderman SW, et al. Spontaneous behaviour is structured by reinforcement without explicit reward. Nature. PMID 36653449 DOI: 10.1038/s41586-022-05611-2  0.649
2023 Weinreb C, Sun DS. To dismantle structural racism in science, scientists need to learn how it works. Neuropsychopharmacology : Official Publication of the American College of Neuropsychopharmacology. PMID 36646817 DOI: 10.1038/s41386-023-01534-2  0.216
2022 Patel SH, Christodoulou C, Weinreb C, Yu Q, da Rocha EL, Pepe-Mooney BJ, Bowling S, Li L, Osorio FG, Daley GQ, Camargo FD. Lifelong multilineage contribution by embryonic-born blood progenitors. Nature. PMID 35705805 DOI: 10.1038/s41586-022-04804-z  0.31
2021 Turrero García M, Stegmann SK, Lacey TE, Reid CM, Hrvatin S, Weinreb C, Adam MA, Nagy MA, Harwell CC. Transcriptional profiling of sequentially generated septal neuron fates. Elife. 10. PMID 34851821 DOI: 10.7554/eLife.71545  0.337
2020 Brann DH, Tsukahara T, Weinreb C, Lipovsek M, Van den Berge K, Gong B, Chance R, Macaulay IC, Chou HJ, Fletcher RB, Das D, Street K, de Bezieux HR, Choi YG, Risso D, et al. Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia. Science Advances. 6. PMID 32937591 DOI: 10.1126/Sciadv.Abc5801  0.742
2020 Rodriguez-Fraticelli AE, Weinreb C, Wang SW, Migueles RP, Jankovic M, Usart M, Klein AM, Lowell S, Camargo FD. Single-cell lineage tracing unveils a role for TCF15 in haematopoiesis. Nature. 583: 585-589. PMID 32669716 DOI: 10.1038/S41586-020-2503-6  0.691
2020 Cooper KW, Brann DH, Farruggia MC, Bhutani S, Pellegrino R, Tsukahara T, Weinreb C, Joseph PV, Larson ED, Parma V, Albers MW, Barlow LA, Datta SR, Di Pizio A. COVID-19 and the Chemical Senses: Supporting Players Take Center Stage. Neuron. PMID 32640192 DOI: 10.1016/J.Neuron.2020.06.032  0.706
2020 Weinreb C, Klein AM. Lineage reconstruction from clonal correlations. Proceedings of the National Academy of Sciences of the United States of America. PMID 32632001 DOI: 10.1073/Pnas.2000238117  0.689
2020 Weinreb C, Rodriguez-Fraticelli A, Camargo FD, Klein AM. Lineage tracing on transcriptional landscapes links state to fate during differentiation. Science (New York, N.Y.). PMID 31974159 DOI: 10.1126/Science.Aaw3381  0.701
2019 Rodriguez-Fraticelli AE, Weinreb CS, Klein AM, Wang S, Camargo FD. Combined Single Cell Lineage and Transcriptome Sequencing Unveils Cell-Autonomous Regulators of Hematopoietic Stem Cell Fate Blood. 134: 446-446. DOI: 10.1182/Blood-2019-123447  0.668
2019 Rodriguez-Fraticelli A, Wang S, Weinreb C, Camargo F. 2027 - Simultaneous Lineage And Transcriptional Analysis Of Single Hscs Identifies Mechanisms Of Functional Heterogeneity Experimental Hematology. 76. DOI: 10.1016/J.Exphem.2019.06.299  0.523
2018 Wagner DE, Weinreb C, Collins ZM, Briggs JA, Megason SG, Klein AM. Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo. Science (New York, N.Y.). PMID 29700229 DOI: 10.1126/Science.Aar4362  0.738
2018 Briggs JA, Weinreb C, Wagner DE, Megason S, Peshkin L, Kirschner MW, Klein AM. The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution. Science (New York, N.Y.). PMID 29700227 DOI: 10.1126/Science.Aar5780  0.758
2018 Dahlin JS, Hamey FK, Pijuan-Sala B, Shepherd M, Lau WWY, Nestorowa S, Weinreb C, Wolock S, Hannah R, Diamanti E, Kent DG, Göttgens B, Wilson NK. A single cell hematopoietic landscape resolves eight lineage trajectories and defects in Kit mutant mice. Blood. PMID 29588278 DOI: 10.1016/J.Exphem.2018.06.241  0.502
2018 Tusi BK, Wolock SL, Weinreb C, Hwang Y, Hidalgo D, Zilionis R, Waisman A, Huh JR, Klein AM, Socolovsky M. Population snapshots predict early haematopoietic and erythroid hierarchies. Nature. PMID 29466336 DOI: 10.1038/Nature25741  0.691
2018 Weinreb C, Wolock S, Tusi BK, Socolovsky M, Klein AM. Fundamental limits on dynamic inference from single-cell snapshots. Proceedings of the National Academy of Sciences of the United States of America. PMID 29463712 DOI: 10.1073/Pnas.1714723115  0.691
2018 Rodriguez-Fraticelli AE, Wolock SL, Weinreb CS, Panero R, Patel SH, Jankovic M, Sun J, Calogero RA, Klein AM, Camargo FD. Clonal analysis of lineage fate in native haematopoiesis. Nature. 553: 212-216. PMID 29323290 DOI: 10.1038/Nature25168  0.673
2018 Rodriguez-Fraticelli AE, Weinreb C, Klein AM, Camargo F. Transcriptional and Functional Description of Stem Cell Heterogeneity in Native and Transplantation Hematopoiesis Blood. 132: 3844-3844. DOI: 10.1182/Blood-2018-99-113646  0.654
2017 Weinreb C, Wolock S, Klein A. SPRING: a kinetic interface for visualizing high dimensional single-cell expression data. Bioinformatics (Oxford, England). PMID 29228172 DOI: 10.1093/Bioinformatics/Btx792  0.655
2017 Leydon AR, Weinreb C, Venable E, Reinders A, Ward JM, Johnson MA. The molecular dialog between flowering plant reproductive partners defined by SNP-informed RNA-Sequencing. The Plant Cell. PMID 28400492 DOI: 10.1105/Tpc.16.00816  0.398
2017 Rodriguez-Fraticelli A, Wolock S, Weinreb C, Sun J, Klein A, Camargo F. Clonal analysis of lineage fate in unperturbed hematopoiesis Experimental Hematology. 53. DOI: 10.1016/J.Exphem.2017.06.075  0.649
2016 Escudero DJ, Lurie MN, Mayer KH, Weinreb C, King M, Galea S, Friedman SR, Marshall BD. Acute HIV infection transmission among people who inject drugs in a mature epidemic setting. Aids (London, England). PMID 27490641 DOI: 10.1097/Qad.0000000000001218  0.31
2016 Weinreb C, Riesselman AJ, Ingraham JB, Gross T, Sander C, Marks DS. 3D RNA and Functional Interactions from Evolutionary Couplings. Cell. PMID 27087444 DOI: 10.1016/J.Cell.2016.03.030  0.351
2016 Monteiro JF, Escudero DJ, Weinreb C, Flanigan T, Galea S, Friedman SR, Marshall BD. Understanding the effects of different HIV transmission models in individual-based microsimulation of HIV epidemic dynamics in people who inject drugs. Epidemiology and Infection. 1-18. PMID 26753627 DOI: 10.1017/S0950268815003180  0.325
2016 Weinreb C, Wolock S, Tusi BK, Socolovsky M, Klein AM. Population Balance Reconstruction of the Hematopoietic Differentiation Hierarchy Blood. 128: 3861-3861. DOI: 10.1182/Blood.V128.22.3861.3861  0.622
2016 Tusi BK, Wolock S, Weinreb C, Hwang Y, Hidalgo D, Klein AM, Socolovsky M. Reconstructing Early Erythroid Development In Vivo Using Single-Cell Transcriptomics Blood. 128: 1195-1195. DOI: 10.1182/Blood.V128.22.1195.1195  0.7
2015 Weinreb C, Raphael BJ. Identification of hierarchical chromatin domains. Bioinformatics (Oxford, England). PMID 26315910 DOI: 10.1093/Bioinformatics/Btv485  0.409
2014 Weinreb C, Oesper L, Raphael BJ. Open adjacencies and k-breaks: detecting simultaneous rearrangements in cancer genomes. Bmc Genomics. 15: S4. PMID 25572114 DOI: 10.1186/1471-2164-15-S6-S4  0.347
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