Simone Rizzetto - Publications

Affiliations: 
Cytocast 
Area:
computational immunology, large-scale simulations

16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 van de Sandt CE, Nguyen THO, Gherardin NA, Crawford JC, Samir J, Minervina AA, Pogorelyy MV, Rizzetto S, Szeto C, Kaur J, Ranson N, Sonda S, Harper A, Redmond SJ, McQuilten HA, et al. Newborn and child-like molecular signatures in older adults stem from TCR shifts across human lifespan. Nature Immunology. PMID 37749325 DOI: 10.1038/s41590-023-01633-8  0.64
2022 Cai C, Samir J, Pirozyan MR, Adikari TN, Gupta M, Leung P, Hughes B, Van der Byl W, Rizzetto S, Elthala A, Keoshkerian E, Palgen JL, Peters T, Nguyen THO, Louie R, et al. Identification of human progenitors of exhausted CD8 T cells associated with elevated IFN-γ response in early phase of viral infection. Nature Communications. 13: 7543. PMID 36477661 DOI: 10.1038/s41467-022-35281-7  0.647
2021 Hensen L, Illing PT, Bridie Clemens E, Nguyen THO, Koutsakos M, van de Sandt CE, Mifsud NA, Nguyen AT, Szeto C, Chua BY, Halim H, Rizzetto S, Luciani F, Loh L, Grant EJ, et al. CD8 T cell landscape in Indigenous and non-Indigenous people restricted by influenza mortality-associated HLA-A*24:02 allomorph. Nature Communications. 12: 2931. PMID 34006841 DOI: 10.1038/s41467-021-23212-x  0.638
2020 Galeano Niño JL, Pageon SV, Tay SS, Colakoglu F, Kempe D, Hywood J, Mazalo JK, Cremasco J, Govendir MA, Dagley LF, Hsu K, Rizzetto S, Zieba J, Rice G, Prior V, et al. Cytotoxic T Cells swarm by homotypic chemokine signalling. Elife. 9. PMID 33046212 DOI: 10.7554/eLife.56554  0.624
2020 McGuire HM, Rizzetto S, Withers BP, Clancy LE, Avdic S, Stern L, Patrick E, Fazekas de St Groth B, Slobedman B, Gottlieb DJ, Luciani F, Blyth E. Mass cytometry reveals immune signatures associated with cytomegalovirus (CMV) control in recipients of allogeneic haemopoietic stem cell transplant and CMV-specific T cells. Clinical & Translational Immunology. 9: e1149. PMID 32642063 DOI: 10.1002/Cti2.1149  0.638
2020 Samir J, Rizzetto S, Gupta M, Luciani F. Exploring and analysing single cell multi-omics data with VDJView. Bmc Medical Genomics. 13: 29. PMID 32070336 DOI: 10.1186/S12920-020-0696-Z  0.663
2020 Singh M, Jackson KJL, Wang JJ, Schofield P, Field MA, Koppstein D, Peters TJ, Burnett DL, Rizzetto S, Nevoltris D, Masle-Farquhar E, Faulks ML, Russell A, Gokal D, Hanioka A, et al. Lymphoma Driver Mutations in the Pathogenic Evolution of an Iconic Human Autoantibody. Cell. PMID 32059783 DOI: 10.1016/J.Cell.2020.01.029  0.597
2019 Brasher NA, Eltahla AA, Underwood A, Boo I, Rizzetto S, Walker M, Rodrigo C, Luciani F, Maher L, Drummer HE, Tedla N, Lloyd AR, Bull RA. B cell immunodominance in primary hepatitis C virus infection. Journal of Hepatology. PMID 31785346 DOI: 10.1016/J.Jhep.2019.11.011  0.554
2019 Van Der Byl W, Rizzetto S, Samir J, Cai C, Eltahla AA, Luciani F. Single-Cell Transcriptome Analysis of T Cells. Methods in Molecular Biology (Clifton, N.J.). 2048: 155-205. PMID 31396939 DOI: 10.1007/978-1-4939-9728-2_16  0.676
2019 Koutsakos M, Illing PT, Nguyen THO, Mifsud NA, Crawford JC, Rizzetto S, Eltahla AA, Clemens EB, Sant S, Chua BY, Wong CY, Allen EK, Teng D, Dash P, Boyd DF, et al. Human CD8 T cell cross-reactivity across influenza A, B and C viruses. Nature Immunology. PMID 30778243 DOI: 10.1038/S41590-019-0320-6  0.652
2018 Stern L, McGuire H, Avdic S, Rizzetto S, Fazekas de St Groth B, Luciani F, Slobedman B, Blyth E. Mass Cytometry for the Assessment of Immune Reconstitution After Hematopoietic Stem Cell Transplantation. Frontiers in Immunology. 9: 1672. PMID 30093901 DOI: 10.3389/Fimmu.2018.01672  0.619
2018 Rizzetto S, Koppstein DNP, Samir J, Singh M, Reed JH, Cai CH, Lloyd AR, Eltahla AA, Goodnow CC, Luciani F. B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle. Bioinformatics (Oxford, England). PMID 29659703 DOI: 10.1093/Bioinformatics/Bty203  0.637
2018 Wang Z, Zhu L, Nguyen THO, Wan Y, Sant S, Quiñones-Parra SM, Crawford JC, Eltahla AA, Rizzetto S, Bull RA, Qiu C, Koutsakos M, Clemens EB, Loh L, Chen T, et al. Clonally diverse CD38HLA-DRCD8T cells persist during fatal H7N9 disease. Nature Communications. 9: 824. PMID 29483513 DOI: 10.1038/S41467-018-03243-7  0.634
2017 Rizzetto S, Eltahla AA, Lin P, Bull R, Lloyd AR, Ho JWK, Venturi V, Luciani F. Impact of sequencing depth and read length on single cell RNA sequencing data of T cells. Scientific Reports. 7: 12781. PMID 28986563 DOI: 10.1038/S41598-017-12989-X  0.645
2017 Sierro F, Evrard M, Rizzetto S, Melino M, Mitchell AJ, Florido M, Beattie L, Walters SB, Tay SS, Lu B, Holz LE, Roediger B, Wong YC, Warren A, Ritchie W, et al. A Liver Capsular Network of Monocyte-Derived Macrophages Restricts Hepatic Dissemination of Intraperitoneal Bacteria by Neutrophil Recruitment. Immunity. 47: 374-388.e6. PMID 28813662 DOI: 10.1016/J.Immuni.2017.07.018  0.531
2016 Eltahla AA, Rizzetto S, Pirozyan MR, Betz-Stablein BD, Venturi V, Kedzierska K, Lloyd AR, Bull RA, Luciani F. Linking the T cell receptor to the single cell transcriptome in antigen-specific human T cells. Immunology and Cell Biology. 94: 604-11. PMID 26860370 DOI: 10.1038/Icb.2016.16  0.705
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