Boyko Kakaradov, Ph.D.
Affiliations: | Bioinformatics | University of California, San Diego, La Jolla, CA |
Area:
RNA processing, neurodevelopment, neurodegeneration, computational biologyGoogle:
"Boyko Kakaradov"Mean distance: 15 (cluster 17) | S | N | B | C | P |
Parents
Sign in to add mentor| Gene W. Yeo | grad student | 2014 | UCSD | |
| (Statistical models for RNA biology: from single nucleotides to single cells.) | ||||
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Publications
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| Merico D, Spickett C, O'Hara M, et al. (2020) variant c.1934T > G p.Met645Arg causes Wilson disease by promoting exon 6 skipping. Npj Genomic Medicine. 5: 16 |
| Tang H, Kirkness EF, Lippert C, et al. (2017) Profiling of Short-Tandem-Repeat Disease Alleles in 12,632 Human Whole Genomes. American Journal of Human Genetics. 101: 700-715 |
| Song Y, Botvinnik OB, Lovci MT, et al. (2017) Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation. Molecular Cell |
| Kakaradov B, Arsenio J, Widjaja CE, et al. (2017) Early transcriptional and epigenetic regulation of CD8(+) T cell differentiation revealed by single-cell RNA sequencing. Nature Immunology |
| Gylfe AE, Shinbrot E, Kakaradov B, et al. (2017) Tumor profiling from whole-genome and whole transcriptome sequencing to uncover gene fusions and structural variations in clinically relevant cancer genes. Journal of Clinical Oncology. 35: e23118-e23118 |
| Bardy C, van den Hurk M, Kakaradov B, et al. (2016) Predicting the functional states of human iPSC-derived neurons with single-cell RNA-seq and electrophysiology. Molecular Psychiatry |
| Arsenio J, Kakaradov B, Metz PJ, et al. (2015) Reply to: "CD8(+) T cell diversification by asymmetric cell division". Nature Immunology. 16: 893-4 |
| Metz PJ, Arsenio J, Kakaradov B, et al. (2015) Regulation of asymmetric division and CD8+ T lymphocyte fate specification by protein kinase Cζ and protein kinase Cλ/ι. Journal of Immunology (Baltimore, Md. : 1950). 194: 2249-59 |
| Lo C, Kakaradov B, Lokshtanov D, et al. (2014) SeeSite: Characterizing Relationships between Splice Junctions and Splicing Enhancers. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 11: 648-56 |
| Arsenio J, Kakaradov B, Metz PJ, et al. (2014) Early specification of CD8+ T lymphocyte fates during adaptive immunity revealed by single-cell gene-expression analyses. Nature Immunology. 15: 365-72 |