Boyko Kakaradov, Ph.D.

Affiliations: 
Bioinformatics University of California, San Diego, La Jolla, CA 
Area:
RNA processing, neurodevelopment, neurodegeneration, computational biology
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"Boyko Kakaradov"
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SNBCP

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Gene W. Yeo grad student 2014 UCSD
 (Statistical models for RNA biology: from single nucleotides to single cells.)
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Publications

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Song Y, Botvinnik OB, Lovci MT, et al. (2017) Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation. Molecular Cell
Kakaradov B, Arsenio J, Widjaja CE, et al. (2017) Early transcriptional and epigenetic regulation of CD8(+) T cell differentiation revealed by single-cell RNA sequencing. Nature Immunology
Arsenio J, Kakaradov B, Metz PJ, et al. (2015) Reply to: "CD8(+) T cell diversification by asymmetric cell division". Nature Immunology. 16: 893-4
Metz PJ, Arsenio J, Kakaradov B, et al. (2015) Regulation of asymmetric division and CD8+ T lymphocyte fate specification by protein kinase Cζ and protein kinase Cλ/ι. Journal of Immunology (Baltimore, Md. : 1950). 194: 2249-59
Lo C, Kakaradov B, Lokshtanov D, et al. (2014) SeeSite: Characterizing Relationships between Splice Junctions and Splicing Enhancers. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 11: 648-56
Arsenio J, Kakaradov B, Metz PJ, et al. (2014) Early specification of CD8+ T lymphocyte fates during adaptive immunity revealed by single-cell gene-expression analyses. Nature Immunology. 15: 365-72
Washburn MC, Kakaradov B, Sundararaman B, et al. (2014) The dsRBP and inactive editor ADR-1 utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome. Cell Reports. 6: 599-607
Kakaradov B, Xiong HY, Lee LJ, et al. (2012) Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data. Bmc Bioinformatics. 13: S11
Medvedev P, Scott E, Kakaradov B, et al. (2011) Error correction of high-throughput sequencing datasets with non-uniform coverage. Bioinformatics (Oxford, England). 27: i137-41
Yeh RB, Liao C, Klemmer SR, et al. (2006) ButterflyNet: A mobile capture and access system for field biology research Conference On Human Factors in Computing Systems - Proceedings. 1: 571-580
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