William J. Greenleaf, Ph.D.
Affiliations: | Stanford University, Palo Alto, CA |
Area:
biophysics, single molecules, motor proteins, transcriptionGoogle:
"William Greenleaf"Mean distance: 15.3 (cluster 6) | S | N | B | C | P |
Parents
Sign in to add mentor| Steven M. Block | grad student | 2008 | Stanford | |
| (High-resolution, single-molecule measurements of transcription and RNA folding.) | ||||
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Publications
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| Limouse C, Smith OK, Jukam D, et al. (2023) Global mapping of RNA-chromatin contacts reveals a proximity-dominated connectivity model for ncRNA-gene interactions. Nature Communications. 14: 6073 |
| Horton CA, Alexandari AM, Hayes MGB, et al. (2023) Short tandem repeats bind transcription factors to tune eukaryotic gene expression. Science (New York, N.Y.). 381: eadd1250 |
| Shin JH, Bonilla SL, Denny SK, et al. (2023) Dissecting the energetic architecture within an RNA tertiary structural motif via high-throughput thermodynamic measurements. Proceedings of the National Academy of Sciences of the United States of America. 120: e2220485120 |
| Kim SH, Marinov GK, Bagdatli ST, et al. (2023) Simultaneous Single-Cell Profiling of the Transcriptome and Accessible Chromatin Using SHARE-seq. Methods in Molecular Biology (Clifton, N.J.). 2611: 187-230 |
| Marklund E, Ke Y, Greenleaf WJ. (2023) High-throughput biochemistry in RNA sequence space: predicting structure and function. Nature Reviews. Genetics |
| Sadée C, Hagler LD, Becker WR, et al. (2022) A comprehensive thermodynamic model for RNA binding by the Saccharomyces cerevisiae Pumilio protein PUF4. Nature Communications. 13: 4522 |
| Bonilla SL, Denny SK, Shin JH, et al. (2021) High-throughput dissection of the thermodynamic and conformational properties of a ubiquitous class of RNA tertiary contact motifs. Proceedings of the National Academy of Sciences of the United States of America. 118 |
| Andreasson JOL, Savinov A, Block SM, et al. (2020) Comprehensive sequence-to-function mapping of cofactor-dependent RNA catalysis in the glmS ribozyme. Nature Communications. 11: 1663 |
| Shipony Z, Marinov GK, Swaffer MP, et al. (2020) Long-range single-molecule mapping of chromatin accessibility in eukaryotes. Nature Methods |
| Granja JM, Klemm S, McGinnis LM, et al. (2019) Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia. Nature Biotechnology |