Ari M. Frank, Ph.D.
Affiliations: | Computer Science and Engineering | University of California, San Diego, La Jolla, CA |
Area:
Bioinformatics, proteomics, mass spectrometryGoogle:
"Ari Frank"Mean distance: 18.06 (cluster 17)
Parents
Sign in to add mentor| Pavel A. Pevzner | grad student | 2008 | UCSD | |
| (Algorithms for tandem mass spectrometry-based proteomics.) | ||||
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Publications
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| Guthals A, Clauser KR, Frank AM, et al. (2013) Sequencing-grade de novo analysis of MS/MS triplets (CID/HCD/ETD) from overlapping peptides. Journal of Proteome Research. 12: 2846-57 |
| Frank AM, Monroe ME, Shah AR, et al. (2011) Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra. Nature Methods. 8: 587-91 |
| Frank AM. (2009) Predicting intensity ranks of peptide fragment ions. Journal of Proteome Research. 8: 2226-40 |
| Frank AM. (2009) A ranking-based scoring function for peptide-spectrum matches. Journal of Proteome Research. 8: 2241-52 |
| Frank AM, Pesavento JJ, Mizzen CA, et al. (2008) Interpreting top-down mass spectra using spectral alignment. Analytical Chemistry. 80: 2499-505 |
| Frank AM, Bandeira N, Shen Z, et al. (2008) Clustering millions of tandem mass spectra. Journal of Proteome Research. 7: 113-22 |
| Waridel P, Frank A, Thomas H, et al. (2007) Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing. Proteomics. 7: 2318-29 |
| Bandeira N, Tsur D, Frank A, et al. (2007) Protein identification by spectral networks analysis. Proceedings of the National Academy of Sciences of the United States of America. 104: 6140-5 |
| Frank AM, Savitski MM, Nielsen ML, et al. (2007) De novo peptide sequencing and identification with precision mass spectrometry. Journal of Proteome Research. 6: 114-23 |
| Wielsch N, Thomas H, Surendranath V, et al. (2006) Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches. Journal of Proteome Research. 5: 2448-56 |