Anat Kreimer, Ph.D.
Affiliations: | 2014 | Biomedical Informatics | Columbia University, New York, NY |
Area:
Computational Biology, Genomics, BioinformaticsGoogle:
"Anat Kreimer"Parents
Sign in to add mentor| Itsik G. Pe'er | grad student | 2014 | Columbia | |
| (Analysis of trans eSNPs infers regulatory network architecture.) | ||||
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| Kreimer A, Ashuach T, Inoue F, et al. (2022) Massively parallel reporter perturbation assays uncover temporal regulatory architecture during neural differentiation. Nature Communications. 13: 1504 |
| Gordon MG, Inoue F, Martin B, et al. (2020) lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements. Nature Protocols |
| Inoue F, Kreimer A, Ashuach T, et al. (2019) Identification and Massively Parallel Characterization of Regulatory Elements Driving Neural Induction. Cell Stem Cell |
| Ashuach T, Fischer DS, Kreimer A, et al. (2019) MPRAnalyze: statistical framework for massively parallel reporter assays. Genome Biology. 20: 183 |
| Kreimer A, Yan Z, Ahituv N, et al. (2019) Meta-analysis of massively parallel reporter assays enables prediction of regulatory activity. Human Mutation |
| Shigaki D, Adato O, Adhikar AN, et al. (2019) Integration of Multiple Epigenomic Marks Improves Prediction of Variant Impact in Saturation Mutagenesis Reporter Assay. Human Mutation |
| Ryu AH, Eckalbar WL, Kreimer A, et al. (2017) Use antibiotics in cell culture with caution: genome-wide identification of antibiotic-induced changes in gene expression and regulation. Scientific Reports. 7: 7533 |
| Kreimer A, Zeng H, Edwards MD, et al. (2017) Predicting gene expression in massively parallel reporter assays: a comparative study. Human Mutation |
| Levy R, Carr R, Kreimer A, et al. (2015) NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation. Bmc Bioinformatics. 16: 164 |
| Kreimer A, Pe'er I. (2014) Co-regulated transcripts associated to cooperating eSNPs define Bi-fan motifs in human gene networks. Plos Genetics. 10: e1004587 |