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Robi D. Mitra

Affiliations: 
Biology & Biomedical Sciences (Computational Biology) Washington University, Saint Louis, St. Louis, MO 
Area:
Molecular Biology, Biochemistry, General
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"Robi Mitra"
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Parents

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Children

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Cara R. Rieger grad student 2009 Washington University (Neurotree)
Katherine E. Varley grad student 2009 Washington University
Lee A. Tessler grad student 2011 Washington University
Yue Yun grad student 2012 Washington University
Michael Dale Brooks grad student 2014 Washington University
David N. Mayhew grad student 2014 Washington University
Maximiliaan A. Schillebeeckx grad student 2014 Washington University

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Publications

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Yen A, Mateusiak C, Sarafinovska S, et al. (2023) Calling Cards: A Customizable Platform to Longitudinally Record Protein-DNA Interactions Over Time in Cells and Tissues. Current Protocols. 3: e883
Yen A, Mateusiak C, Sarafinovska S, et al. (2023) Calling Cards: a customizable platform to longitudinally record protein-DNA interactions over time in cells and tissues. Biorxiv : the Preprint Server For Biology
Lalli M, Yen A, Thopte U, et al. (2022) Measuring transcription factor binding and gene expression using barcoded self-reporting transposon calling cards and transcriptomes. Nar Genomics and Bioinformatics. 4: lqac061
Moudgil A, Li D, Hsu S, et al. (2020) The qBED track: a novel genome browser visualization for point processes. Bioinformatics (Oxford, England)
Lalli MA, Avey D, Dougherty JD, et al. (2020) High-throughput single-cell functional elucidation of neurodevelopmental disease-associated genes reveals convergent mechanisms altering neuronal differentiation. Genome Research
Chen D, Cremona MA, Qi Z, et al. (2020) Human L1 Transposition Dynamics Unraveled with Functional Data Analysis. Molecular Biology and Evolution
Moudgil A, Wilkinson MN, Chen X, et al. (2020) Self-Reporting Transposons Enable Simultaneous Readout of Gene Expression and Transcription Factor Binding in Single Cells. Cell
Cammack AJ, Moudgil A, Chen J, et al. (2020) A viral toolkit for recording transcription factor-DNA interactions in live mouse tissues. Proceedings of the National Academy of Sciences of the United States of America
Liu J, Shively CA, Mitra RD. (2020) Quantitative analysis of transcription factor binding and expression using calling cards reporter arrays. Nucleic Acids Research
Kang Y, Patel NR, Shively C, et al. (2020) Dual threshold optimization and network inference reveal convergent evidence from TF binding locations and TF perturbation responses. Genome Research
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