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Frederic D. Bushman

Affiliations: 
Genomics and Computational Biology University of Pennsylvania, Philadelphia, PA, United States 
Area:
Bioinformatics, Molecular Biology, Immunology
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Parents

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Mark Ptashne grad student (Chemistry Tree)
Robert A Craigie post-doc NIH (NIDDK)

Children

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Jeremy Leipzig research assistant 2004-2007 University of Pennsylvania School of Medicine (Neurotree)
Matthew J. Culyba grad student 2008 Penn
Keshet Ronen grad student 2010 Penn
Rithun Mukherjee grad student 2011 Penn
Emily S. Charlson grad student 2012 Penn
Samuel S. Minot grad student 2012 Penn
Karen E. Ocwieja grad student 2012 Penn
Gregory L. Peterfreund grad student 2012 Penn
Serena Dollive grad student 2013 Penn
Jonathan M. Toung grad student 2013 Penn
Christian Hoffmann grad student 2010-2013
Arwa Abbas grad student 2019 Penn
Christian Hoffmann research scientist 2003-2013

Collaborators

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BETA: Related publications

Publications

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Smith AB, Jenior ML, Keenan O, et al. (2022) Enterococci enhance Clostridioides difficile pathogenesis. Nature
Keeler EL, Taylor LJ, Abbas A, et al. (2021) Rengasvirus, a Circular Replication-Associated Protein-Encoding Single-Stranded DNA Virus-Related Genome That Is a Common Contaminant in Metagenomic Data. Microbiology Resource Announcements. 10
Abbas A, Taylor LJ, Collman RG, et al. (2020) ICTV Virus Taxonomy Profile: . The Journal of General Virology
Abdel-Mohsen M, Richman D, Siliciano RF, et al. (2020) Recommendations for measuring HIV reservoir size in cure-directed clinical trials. Nature Medicine
Schrijvers R, Rijck J, Demeulemeester J, et al. (2020) Correction: LEDGF/p75-Independent HIV-1 Replication Demonstrates a Role for HRP-2 and Remains Sensitive to Inhibition by LEDGINs. Plos Pathogens. 16: e1008894
Eilers G, Gupta K, Allen A, et al. (2020) Influence of the amino-terminal sequence on the structure and function of HIV integrase. Retrovirology. 17: 28
Bushman FD, Conrad M, Ren Y, et al. (2020) Multi-omic Analysis of the Interaction between Clostridioides difficile Infection and Pediatric Inflammatory Bowel Disease. Cell Host & Microbe
Liang G, Zhao C, Zhang H, et al. (2020) The stepwise assembly of the neonatal virome is modulated by breastfeeding. Nature. 581: 470-474
Rubel MA, Abbas A, Taylor LJ, et al. (2020) Lifestyle and the presence of helminths is associated with gut microbiome composition in Cameroonians. Genome Biology. 21: 122
Liang G, Conrad MA, Kelsen JR, et al. (2020) The dynamics of the stool virome in very early onset inflammatory bowel disease. Journal of Crohn's & Colitis
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