Herman J.C. Berendsen
Affiliations: | University of Groningen, Groningen, Netherlands |
Area:
molecular dynamicsWebsite:
https://chg.kncv.nl/geschiedenis/biografieen/b/berendsen%2C-h.j.c.Google:
"Herman Berendsen"Bio:
(1934 - 2019)
https://hoogleraren.ub.rug.nl/hoogleraren/157-berendsen-herman-johan-christiaan
http://irs.ub.rug.nl/ppn/841933588
http://alba.ub.rug.nl/promotorum/?page=showPerson&promovendus_id=1448
Mean distance: 9.02 (cluster 31) | S | N | B | C | P |
Parents
Sign in to add mentor| Jan Kommandeur | grad student | 1962 | RUG | |
| (An NMR Study of Collagen Hydration) | ||||
Children
Sign in to add trainee| Marten Postma | research assistant | ||
| Klaas Hallenga | grad student | 1972 | RUG |
| Marcus A. Hemminga | grad student | 1974 | RUG |
| Hommo Tjarko Edzes | grad student | 1976 | RUG |
| Cor Dijkema | grad student | 1979 | RUG |
| Jacob Martien ten Cate | grad student | 1979 | RUG (Neurotree) |
| Jan F.M. Post | grad student | 1981 | RUG |
| Siewert Jan Marrink | grad student | 1994 | RUG |
| Arjan van der Vaart | grad student | 1995 | RUG |
| Natasha M. Maurits | grad student | 1998 | RUG (Neurotree) |
| Bert L. de Groot | grad student | 1994-1998 | RUG (Neurotree) |
| Peter Tieleman | grad student | 1995-1998 | RUG |
| Marcel Swart | grad student | 1998-2002 | RUG |
| Edward T. Samulski | post-doc | 1969-1970 | RUG |
| Wilfred F. van Gunsteren | post-doc | 1976-1978 | RUG |
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Publications
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| Melo MN, Arnarez C, Sikkema H, et al. (2017) High-throughput simulations reveal membrane-mediated effects of alcohols on MscL gating. Journal of the American Chemical Society |
| Goga N, Melo MN, Rzepiela AJ, et al. (2015) Benchmark of Schemes for Multiscale Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. 11: 1389-98 |
| Goga N, Rzepiela AJ, de Vries AH, et al. (2012) Efficient Algorithms for Langevin and DPD Dynamics. Journal of Chemical Theory and Computation. 8: 3637-49 |
| De Jong DH, Schäfer LV, De Vries AH, et al. (2011) Determining equilibrium constants for dimerization reactions from molecular dynamics simulations. Journal of Computational Chemistry. 32: 1919-28 |
| Berendsen HJ. (2011) The relevance of distance statistics for protein folding. Journal of Biomolecular Structure & Dynamics. 28: 599-601; discussion |
| Van Der Spoel D, Lindahl E, Hess B, et al. (2005) GROMACS: fast, flexible, and free. Journal of Computational Chemistry. 26: 1701-18 |
| van den Bosch M, Swart M, Snijders JG, et al. (2005) Calculation of the redox potential of the protein azurin and some mutants. Chembiochem : a European Journal of Chemical Biology. 6: 738-46 |
| Saint-Martin H, Hess B, Berendsen HJ. (2004) An application of flexible constraints in Monte Carlo simulations of the isobaric--isothermal ensemble of liquid water and ice Ih with the polarizable and flexible mobile charge densities in harmonic oscillators model. The Journal of Chemical Physics. 120: 11133-43 |
| Groenhof G, Bouxin-Cademartory M, Hess B, et al. (2004) Photoactivation of the photoactive yellow protein: why photon absorption triggers a trans-to-cis Isomerization of the chromophore in the protein. Journal of the American Chemical Society. 126: 4228-33 |
| Flohil JA, Vriend G, Berendsen HJ. (2002) Completion and refinement of 3-D homology models with restricted molecular dynamics: application to targets 47, 58, and 111 in the CASP modeling competition and posterior analysis. Proteins. 48: 593-604 |