Matthew T. Weirauch, Ph.D.
Affiliations: | 2009 | University of California, Santa Cruz, Santa Cruz, CA, United States |
Area:
Bioinformatics Biology, Genetics, Biostatistics BiologyGoogle:
"Matthew Weirauch"Parents
Sign in to add mentor| Richard P. Hughey | grad student | 2009 | UC Santa Cruz | |
| (Data integration methods for systems-level investigation of gene functional association networks.) | ||||
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Publications
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| Shook MS, Lu X, Chen X, et al. (2023) Systematic identification of genotype-dependent enhancer variants in eosinophilic esophagitis. American Journal of Human Genetics |
| Cain B, Webb J, Yuan Z, et al. (2023) Prediction of cooperative homeodomain DNA binding sites from high-throughput-SELEX data. Nucleic Acids Research |
| Cazares TA, Rizvi FW, Iyer B, et al. (2023) maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks. Plos Computational Biology. 19: e1010863 |
| Sawyer RP, Stone HK, Salim H, et al. (2022) Frontotemporal degeneration genetic risk loci and transcription regulation as a possible mechanistic link to disease risk. Medicine. 101: e31078 |
| Zhao Y, Vartak SV, Conte A, et al. (2022) "Stripe" transcription factors provide accessibility to co-binding partners in mammalian genomes. Molecular Cell |
| Zhou T, Zhu X, Ye Z, et al. (2022) Lupus enhancer risk variant causes dysregulation of IRF8 through cooperative lncRNA and DNA methylation machinery. Nature Communications. 13: 1855 |
| Felton JM, Vallabh S, Parameswaran S, et al. (2021) Epigenetic Analysis of the Chromatin Landscape Identifies a Repertoire of Murine Eosinophil-Specific PU.1-Bound Enhancers. Journal of Immunology (Baltimore, Md. : 1950) |
| Hass MR, Brissette D, Parameswaran S, et al. (2021) Runx1 shapes the chromatin landscape via a cascade of direct and indirect targets. Plos Genetics. 17: e1009574 |
| Lu X, Chen X, Forney C, et al. (2021) Global discovery of lupus genetic risk variant allelic enhancer activity. Nature Communications. 12: 1611 |
| Elliott KH, Chen X, Salomone J, et al. (2020) Gli3 utilizes Hand2 to synergistically regulate tissue-specific transcriptional networks. Elife. 9 |