Mugdha Khaladkar, Ph.D.
Affiliations: | 2009 | New Jersey Institute of Technology, Newark, NJ, United States |
Area:
Computer Science, Bioinformatics BiologyGoogle:
"Mugdha Khaladkar"Parents
Sign in to add mentor| Jason T. L. Wang | grad student | 2009 | NJIT | |
| (A bioinformatics framework for RNA structure mining, motif discovery and polyadenylation analysis.) | ||||
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Publications
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| Dueck H, Khaladkar M, Kim TK, et al. (2015) Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation. Genome Biology. 16: 122 |
| Francis C, Natarajan S, Lee MT, et al. (2014) Divergence of RNA localization between rat and mouse neurons reveals the potential for rapid brain evolution. Bmc Genomics. 15: 883 |
| Buckley PT, Khaladkar M, Kim J, et al. (2014) Cytoplasmic intron retention, function, splicing, and the sentinel RNA hypothesis. Wiley Interdisciplinary Reviews. Rna. 5: 223-30 |
| Khaladkar M, Buckley PT, Lee MT, et al. (2013) Subcellular RNA sequencing reveals broad presence of cytoplasmic intron-sequence retaining transcripts in mouse and rat neurons. Plos One. 8: e76194 |
| Hua L, Wang JT, Ji X, et al. (2012) A method for discovering common patterns from two RNA secondary structures and its application to structural repeat detection. Journal of Bioinformatics and Computational Biology. 10: 1250001 |
| Khaladkar M, Smyda M, Hannenhalli S. (2011) Epigenomic and RNA structural correlates of polyadenylation. Rna Biology. 8: 529-37 |
| Khaladkar M, Patel V, Bellofatto V, et al. (2008) Detecting conserved secondary structures in RNA molecules using constrained structural alignment. Computational Biology and Chemistry. 32: 264-72 |
| Khaladkar M, Liu J, Wen D, et al. (2008) Mining small RNA structure elements in untranslated regions of human and mouse mRNAs using structure-based alignment. Bmc Genomics. 9: 189 |
| Khaladkar M, Bellofatto V, Wang JT, et al. (2007) RADAR: a web server for RNA data analysis and research. Nucleic Acids Research. 35: W300-4 |
| Khaladkar M, Bellofatto V, Wang JTL, et al. (2007) Constrained RNA structural alignment: Algorithms and application to motif detection in the untranslated regions of Trypanosoma brucei mRNAs Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 334-341 |