Mark T. Holder, Ph.D.
Affiliations: | Evolution, Ecology, and Behavior | University of Kansas, Lawrence, KS, United States |
Area:
PhylogeneticsGoogle:
"Mark Holder"Parents
Sign in to add mentor| David M. Hillis | grad student | 1995-2001 | UT Austin | |
| (Using a complex model of sequence evolution to evaluate and improve phylogenetic methods.) | ||||
| Paul O. Lewis | post-doc | 2001-2003 | University of Connecticut | |
| David Swofford | post-doc | 2003-2007 | Florida State | |
Children
Sign in to add trainee| Jeet Sukumaran | grad student | 2012 | University of Kansas |
| Jamie R. Oaks | grad student | 2013 | University of Kansas |
| Peter E. Midford | post-doc | University of Kansas | |
| Daniel Money | post-doc | University of Kansas (Computational Biology Tree) | |
| Derrick J. Zwickl | post-doc | University of Kansas | |
| Tracy A. Heath | post-doc | 2008-2010 | University of Kansas |
| Jiaye Yu | post-doc | 2008-2010 | University of Kansas |
| Emily Jane McTavish | post-doc | 2013-2016 | University of Kansas |
| April M. Wright | post-doc | 2016-2017 | University of Kansas |
| Walker Pett | post-doc | 2017-2018 | University of Kansas |
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Publications
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| Sukumaran J, Holder MT, Knowles LL. (2021) Incorporating the speciation process into species delimitation. Plos Computational Biology. 17: e1008924 |
| McTavish EJ, Sanchez Reyes LL, Holder MT. (2021) OpenTree: A Python package for Accessing and Analyzing data from the Open Tree of Life. Systematic Biology |
| Gibson MJS, Crawford DJ, Holder MT, et al. (2020) Genome-wide genotyping estimates mating system parameters and paternity in the island species Tolpis succulenta. American Journal of Botany. 107: 1189-1197 |
| McTavish EJ, Holder M, Cranston K. (2018) Nurturing a sustainable Open Tree of Life Biodiversity Information Science and Standards. 2: e25727 |
| Redelings BD, Holder MT. (2017) A supertree pipeline for summarizing phylogenetic and taxonomic information for millions of species. Peerj. 5: e3058 |
| McTavish EJ, Steel M, Holder MT. (2015) Twisted trees and inconsistency of tree estimation when gaps are treated as missing data - The impact of model mis-specification in distance corrections. Molecular Phylogenetics and Evolution. 93: 289-95 |
| McTavish EJ, Hinchliff CE, Allman JF, et al. (2015) Phylesystem: a git-based data store for community-curated phylogenetic estimates. Bioinformatics (Oxford, England) |
| Lewis PO, Holder MT, Swofford DL. (2015) Phycas: software for Bayesian phylogenetic analysis. Systematic Biology. 64: 525-31 |
| Oaks JR, Sukumaran J, Esselstyn JA, et al. (2013) Evidence for climate-driven diversification? A caution for interpreting ABC inferences of simultaneous historical events. Evolution; International Journal of Organic Evolution. 67: 991-1010 |
| Koch JM, Holder MT. (2012) An algorithm for calculating the probability of classes of data patterns on a genealogy. Plos Currents. 4: e4fd1286980c08 |