Herbert M. Sauro
Affiliations: | University of Washington, Seattle, Seattle, WA |
Area:
Systems Biology, Synthetic BiologyWebsite:
https://sites.google.com/site/bioindica2016/news-and-updates/speaker-herbert-m-sauroGoogle:
"Herbert Sauro"Parents
Sign in to add mentor| David A. Fell | grad student | 1982-1986 | Oxford Brookes University |
| Henrik Kacser | post-doc | 1987-1991 | Edinburgh |
Children
Sign in to add trainee| Frank Bergmann | grad student | 2010 | University of Washington |
| Deepak Chandran | grad student | 2011 | University of Washington |
| Michal Galdzicki | grad student | 2012 | University of Washington |
| Bryan Bartley | grad student | 2009-2014 | University of Washington |
| Wilbert Copeland | grad student | 2009-2014 | University of Washington |
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Publications
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| Ma S, Fan L, Konanki SA, et al. (2023) VSCode-Antimony: A Source Editor for Building, Analyzing, and Translating Antimony Models. Bioinformatics (Oxford, England) |
| Shin W, Gennari JH, Hellerstein JL, et al. (2023) An automated model annotation system (AMAS) for SBML models. Bioinformatics (Oxford, England). 39 |
| Jardine BE, Smith LP, Sauro HM. (2023) MakeSBML: A tool for converting between Antimony and SBML. Arxiv |
| Shin W, Gennari JH, Hellerstein JL, et al. (2023) An Automated Model Annotation System (AMAS) for SBML Models. Biorxiv : the Preprint Server For Biology |
| Shin J, Porubsky V, Carothers J, et al. (2023) Standards, dissemination, and best practices in systems biology. Current Opinion in Biotechnology. 81: 102922 |
| Xu J, Jiang J, Sauro HM. (2022) SBMLDiagrams: A python package to process and visualize SBML layout and render. Bioinformatics (Oxford, England) |
| Shaikh B, Smith LP, Vasilescu D, et al. (2022) BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic Acids Research |
| Smith LP, Bergmann FT, Garny A, et al. (2021) The simulation experiment description markup language (SED-ML): language specification for level 1 version 4. Journal of Integrative Bioinformatics. 18: 20210021 |
| Welsh C, Nickerson DP, Rampadarath A, et al. (2021) libOmexMeta: Enabling semantic annotation of models to support FAIR principles. Bioinformatics (Oxford, England) |
| Baig H, Fontanarossa P, Kulkarni V, et al. (2021) Synthetic biology open language visual (SBOL Visual) version 2.3. Journal of Integrative Bioinformatics |