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James J. Collins, PhD

Affiliations: 
Biological Engineering Massachusetts Institute of Technology, Cambridge, MA, United States 
Area:
Systems Biology, Synthetic Biology
Website:
http://collinslab.mit.edu/
Google:
"James Collins"
Bio:

https://en.wikipedia.org/wiki/James_Collins_(bioengineer)

Mean distance: 14.72 (cluster 17)
 
Cross-listing: Computational Biology Tree - Chemistry Tree - Cell Biology Tree

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Parents

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John O’Connor grad student Oxford (Chemistry Tree)

Children

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Meagan Hamblin research assistant (ID Tree)
Nima Dehghani grad student Boston University
Timothy S. Gardner grad student 2000 Boston University (Cell Biology Tree)
Kristen A. Richardson grad student 2001 Boston University
Anthony P. Scinicariello grad student 2002 Boston University (Computational Biology Tree)
William J. Blake grad student 2003 Boston University (Computational Biology Tree)
Farren Isaacs grad student 2003 Boston University
Attila A. Priplata grad student 2005 Boston University (Computational Biology Tree)
Nicholas J. Guido grad student 2006 Boston University (Computational Biology Tree)
Daniel John Dwyer grad student 2007 Boston University (Cell Biology Tree)
Boris Hayete grad student 2007 Boston University (Computational Biology Tree)
Timothy K. Lu grad student 2008 Harvard-MIT Division of Health Sciences and Technology (Chemistry Tree)
Kevin F. Murphy grad student 2008 Boston University (Cell Biology Tree)
Tara L. Deans grad student 2009 Boston University (Computational Biology Tree)
Michael A. Kohanski grad student 2009 Boston University (Computational Biology Tree)
David R. Lorenz grad student 2009 Boston University (Computational Biology Tree)
Ayla Ergun grad student 2010 Boston University (Computational Biology Tree)
Ari E. Friedland grad student 2010 Boston University (Computational Biology Tree)
Michael S. Koris grad student 2010 Boston University (Computational Biology Tree)
Carolyn A. Lawrence grad student 2010 Boston University (Computational Biology Tree)
Ellen C. O'Shaughnessy grad student 2010 Boston University (Computational Biology Tree)
Jarred M. Callura grad student 2012 Boston University (Computational Biology Tree)
Devora Cohen-Karni grad student 2012 Boston University (Computational Biology Tree)
Alexander M. Fichtenholtz grad student 2012 Boston University (Computational Biology Tree)
Henry Hung-Yi Lee grad student 2012 Boston University (Cell Biology Tree)
Kevin D. Litcofsky grad student 2012 Boston University (Computational Biology Tree)
Jonathan Alexander Winkler grad student 2012 Boston University (Cell Biology Tree)
Kyle R. Allison grad student 2013 Boston University (Computational Biology Tree)
Sheetal Modi grad student 2013 Boston University (Computational Biology Tree)
Catherine S. Spina grad student 2013 Boston University (Computational Biology Tree)
Nicole M. Vega grad student 2013 Boston University (Computational Biology Tree)
Raffi B. Afeyan grad student 2014 Boston University (Computational Biology Tree)
Hu Li post-doc MIT
Emma J Chory post-doc 2018- MIT (Chemistry Tree)
Daichi Nozaki post-doc 1997-1998
Mark P. Brynildsen post-doc 2008-2010 Boston University (Chemistry Tree)
Jason H. Yang post-doc 2012-2019 MIT (Computational Biology Tree)
Xuejun Zhu post-doc 2017-2019 MIT (Chemistry Tree)

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Publications

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Ofori-Anyinam B, Hamblin M, Coldren ML, et al. (2024) Catalase activity deficiency sensitizes multidrug-resistant Mycobacterium tuberculosis to the ATP synthase inhibitor bedaquiline. Nature Communications. 15: 9792
Kuru E, Rittichier J, de Puig H, et al. (2024) Rapid discovery and evolution of nanosensors containing fluorogenic amino acids. Nature Communications. 15: 7531
Wong F, de la Fuente-Nunez C, Collins JJ. (2023) Leveraging artificial intelligence in the fight against infectious diseases. Science (New York, N.Y.). 381: 164-170
Valeri JA, Soenksen LR, Collins KM, et al. (2023) BioAutoMATED: An end-to-end automated machine learning tool for explanation and design of biological sequences. Cell Systems. 14: 525-542.e9
Phillips EA, Silverman AD, Joneja A, et al. (2023) Detection of viral RNAs at ambient temperature via reporter proteins produced through the target-splinted ligation of DNA probes. Nature Biomedical Engineering
Cabera A, Edelstein HI, Glykofrydis F, et al. (2022) The sound of silence: Transgene silencing in mammalian cell engineering. Cell Systems. 13: 950-973
Sun Q, Vega NM, Cervantes B, et al. (2022) Enhancing nutritional niche and host defenses by modifying the gut microbiome. Molecular Systems Biology. 18: e9933
Warrier T, El Farran C, Zeng Y, et al. (2022) SETDB1 acts as a topological accessory to Cohesin via an H3K9me3-independent, genomic shunt for regulating cell fates. Nucleic Acids Research
Lummertz da Rocha E, Kubaczka C, Sugden WW, et al. (2022) CellComm infers cellular crosstalk that drives haematopoietic stem and progenitor cell development. Nature Cell Biology
Lobritz MA, Andrews IW, Braff D, et al. (2021) Increased energy demand from anabolic-catabolic processes drives β-lactam antibiotic lethality. Cell Chemical Biology
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