Oleg Y. Borbulevych
Affiliations: | 2008 | University of Notre Dame, Notre Dame, IN, United States |
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| Borbulevych O, Martin RI, Westerhoff LM. (2018) High-throughput quantum-mechanics/molecular-mechanics (ONIOM) macromolecular crystallographic refinement with PHENIX/DivCon: the impact of mixed Hamiltonian methods on ligand and protein structure. Acta Crystallographica. Section D, Structural Biology. 74: 1063-1077 |
| Borbulevych O, Martin RI, Tickle IJ, et al. (2016) XModeScore: a novel method for accurate protonation/tautomer-state determination using quantum-mechanically driven macromolecular X-ray crystallographic refinement. Acta Crystallographica. Section D, Structural Biology. 72: 586-98 |
| Borbulevych OY, Westerhoff LM. (2016) The Impact of Experimental, Protein Structure on our Ability to Model Protein Function Biophysical Journal. 110: 544a |
| Borbulevych OY, Westerhoff LM. (2015) Accurate Determination of Tautomeric/Protonation States in Quantum-Mechanic Driven Macromolecular Crystallographic Refinement Biophysical Journal. 108: 620a |
| Borbulevych OY, Plumley JA, Martin RI, et al. (2014) Accurate macromolecular crystallographic refinement: incorporation of the linear scaling, semiempirical quantum-mechanics program DivCon into the PHENIX refinement package. Acta Crystallographica. Section D, Biological Crystallography. 70: 1233-47 |
| Borbulevych O, Westerhoff L. (2014) High-performance, quantum mechanics-based macromolecular x-ray refinement Acta Crystallographica Section a Foundations and Advances. 70: C1446-C1446 |
| Cole DK, Sami M, Scott DR, et al. (2013) Increased Peptide Contacts Govern High Affinity Binding of a Modified TCR Whilst Maintaining a Native pMHC Docking Mode. Frontiers in Immunology. 4: 168 |
| Kumarasiri M, Llarrull LI, Borbulevych O, et al. (2012) An amino acid position at crossroads of evolution of protein function: antibiotic sensor domain of BlaR1 protein from Staphylococcus aureus versus clasS D β-lactamases. The Journal of Biological Chemistry. 287: 8232-41 |
| Scott DR, Borbulevych OY, Piepenbrink KH, et al. (2011) Disparate degrees of hypervariable loop flexibility control T-cell receptor cross-reactivity, specificity, and binding mechanism. Journal of Molecular Biology. 414: 385-400 |
| Insaidoo FK, Borbulevych OY, Hossain M, et al. (2011) Loss of T cell antigen recognition arising from changes in peptide and major histocompatibility complex protein flexibility: implications for vaccine design. The Journal of Biological Chemistry. 286: 40163-73 |