Duygu Ucar
Affiliations: | 2011-2014 | Jackson Laboratory for Genomic Medicine |
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Parents
Sign in to add mentor| Anne Brunet | post-doc | 2011-2014 | Jackson Laboratory for Genomic Medicine |
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Publications
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| Karakaslar EO, Katiyar N, Hasham M, et al. (2023) Transcriptional activation of Jun and Fos members of the AP-1 complex is a conserved signature of immune aging that contributes to inflammaging. Aging Cell. e13792 |
| Thibodeau A, Khetan S, Eroglu A, et al. (2021) CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data. Plos Computational Biology. 17: e1009670 |
| Pereira BI, De Maeyer RPH, Covre LP, et al. (2020) Sestrins induce natural killer function in senescent-like CD8 T cells. Nature Immunology |
| Lawlor N, Marquez EJ, Lee D, et al. (2020) V-SVA: an R Shiny application for detecting and annotating hidden sources of variation in single cell RNA-seq data. Bioinformatics (Oxford, England) |
| Lawlor N, Márquez EJ, Orchard P, et al. (2019) Multiomic Profiling Identifies cis-Regulatory Networks Underlying Human Pancreatic β Cell Identity and Function. Cell Reports. 26: 788-801.e6 |
| Varshney A, VanRenterghem H, Orchard P, et al. (2018) Cell Specificity of Human Regulatory Annotations and Their Genetic Effects on Gene Expression. Genetics |
| Caielli S, Veiga DT, Balasubramanian P, et al. (2018) A CD4 T cell population expanded in lupus blood provides B cell help through interleukin-10 and succinate. Nature Medicine |
| Lee D, Cheng A, Lawlor N, et al. (2018) Detection of correlated hidden factors from single cell transcriptomes using Iteratively Adjusted-SVA (IA-SVA). Scientific Reports. 8: 17040 |
| Youn A, Marquez EJ, Lawlor N, et al. (2018) BiFET: sequencing Bias-free transcription factor Footprint Enrichment Test. Nucleic Acids Research |
| Thibodeau A, Uyar A, Khetan S, et al. (2018) A neural network based model effectively predicts enhancers from clinical ATAC-seq samples. Scientific Reports. 8: 16048 |