Ilya Ioshikhes
Affiliations: | Bioinformatics | University of Ottawa, Ottawa, ON, Canada |
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Publications
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| Pranckeviciene E, Hosid S, Maziukas I, et al. (2022) Galaxy Dnpatterntools for Computational Analysis of Nucleosome Positioning Sequence Patterns. International Journal of Molecular Sciences. 23 |
| Pranckeviciene E, Hosid S, Liang N, et al. (2020) Nucleosome positioning sequence patterns as packing or regulatory. Plos Computational Biology. 16: e1007365 |
| Mahmud AKMF, Yang D, Stenberg P, et al. (2019) Exploring a Transcription Factor Interaction Network to Identify Cis-Regulatory Modules. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology |
| Hamed M, Khilji S, Dixon K, et al. (2017) Insights into interplay between rexinoid signaling and myogenic regulatory factor-associated chromatin state in myogenic differentiation. Nucleic Acids Research |
| Yang D, Ioshikhes I. (2016) Drosophila H2A and H2A.Z Nucleosome Sequences Reveal Different Nucleosome Positioning Sequence Patterns. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology |
| Rajagopalan M, Balasubramanian S, Ioshikhes I, et al. (2016) Structural dynamics of nucleosome mediated by acetylations at H3K56 and H3K115,122. European Biophysics Journal : Ebj |
| Wight A, Yang D, Ioshikhes I, et al. (2016) Nucleosome Presence at AML-1 Binding Sites Inversely Correlates with Ly49 Expression: Revelations from an Informatics Analysis of Nucleosomes and Immune Cell Transcription Factors. Plos Computational Biology. 12: e1004894 |
| Hosid S, Ioshikhes I. (2014) Apoptotic lymphocytes of H. sapiens lose nucleosomes in GC-rich promoters. Plos Computational Biology. 10: e1003760 |
| Alvarez-Saavedra M, De Repentigny Y, Lagali PS, et al. (2014) Snf2h-mediated chromatin organization and histone H1 dynamics govern cerebellar morphogenesis and neural maturation. Nature Communications. 5: 4181 |
| Nandi S, Blais A, Ioshikhes I. (2013) Identification of cis-regulatory modules in promoters of human genes exploiting mutual positioning of transcription factors. Nucleic Acids Research. 41: 8822-41 |