Shujun Ou
Affiliations: | 2019-2022 | EEOB | Iowa State University, Ames, IA, United States |
| 2022- | Computer Science | Johns Hopkins University, Baltimore, MD |
Area:
transposable element, population genetics, genomics, plant biologyGoogle:
"Shujun Ou"Parents
Sign in to add mentor| Ning Jiang | grad student | 2013-2018 | Michigan State |
| Michael Schatz | post-doc | 2022- | Johns Hopkins (Neurotree) |
| Matthew B. Hufford | post-doc | 2019-2022 | Iowa State |
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Publications
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| Koren S, Bao Z, Guarracino A, et al. (2024) Gapless assembly of complete human and plant chromosomes using only nanopore sequencing. Biorxiv : the Preprint Server For Biology |
| Ou S, Jiang N, Hirsch CN, et al. (2024) Response to Commentary: Accounting for diverse transposable element landscapes is key to developing and evaluating accurate de novo annotation strategies. Genome Biology. 25: 6 |
| Stevenson DW, Ramakrishnan S, Alves CS, et al. (2023) The genome of the Wollemi pine, a critically endangered "living fossil" unchanged since the Cretaceous, reveals extensive ancient transposon activity. Biorxiv : the Preprint Server For Biology |
| Mansfeld BN, Yocca A, Ou S, et al. (2023) A haplotype resolved chromosome-scale assembly of North American wild apple Malus fusca and comparative genomics of the fire blight Mfu10 locus. The Plant Journal : For Cell and Molecular Biology |
| Kovaka S, Ou S, Jenike KM, et al. (2023) Approaching complete genomes, transcriptomes and epi-omes with accurate long-read sequencing. Nature Methods. 20: 12-16 |
| Alonge M, Lebeigle L, Kirsche M, et al. (2022) Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing. Genome Biology. 23: 258 |
| McGrath JM, Funk A, Galewski P, et al. (2022) A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.). Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes |
| Liu Y, Wang H, Jiang Z, et al. (2022) Author Correction: Genomic basis of geographical adaptation to soil nitrogen in rice. Nature |
| Cerbin S, Ou S, Li Y, et al. (2022) Distinct Composition and Amplification Dynamics of Transposable Elements in Sacred Lotus (Nelumbo nucifera Gaertn.). The Plant Journal : For Cell and Molecular Biology |
| Ou S, Su W, Liao Y, et al. (2022) Author Correction: Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline. Genome Biology. 23: 76 |