Niema Moshiri
Affiliations: | 2019- | Computer Science & Engineering | University of California, San Diego, La Jolla, CA |
Area:
BioinformaticsWebsite:
https://niema.netGoogle:
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Parents
Sign in to add mentor| Siavash Mirarab | grad student | 2015-2019 | UCSD |
| Pavel A. Pevzner | grad student | 2015-2019 | UCSD |
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Publications
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| Ji D, Aboukhalil R, Moshiri N. (2024) ViralWasm: a client-side user-friendly web application suite for viral genomics. Bioinformatics (Oxford, England) |
| Young C, Meng S, Moshiri N. (2022) An Evaluation of Phylogenetic Workflows in Viral Molecular Epidemiology. Viruses. 14 |
| Almaraz K, Jang T, Lewis M, et al. (2021) SEPIA: simulation-based evaluation of prioritization algorithms. Bmc Medical Informatics and Decision Making. 21: 177 |
| Moshiri N, Smith DM, Mirarab S. (2020) HIV Care Prioritization using Phylogenetic Branch Length. Journal of Acquired Immune Deficiency Syndromes (1999) |
| Moshiri N. (2020) ViralMSA: Massively scalable reference-guided multiple sequence alignment of viral genomes. Bioinformatics (Oxford, England) |
| Balaban M, Moshiri N, Mai U, et al. (2019) TreeCluster: Clustering biological sequences using phylogenetic trees. Plos One. 14: e0221068 |
| Moshiri N, Ragonnet-Cronin M, Wertheim JO, et al. (2018) FAVITES: simultaneous simulation of transmission networks, phylogenetic trees, and sequences. Bioinformatics (Oxford, England) |
| Moshiri N, Mirarab S. (2018) A Two-State Model of Tree Evolution and Its Applications to Alu Retrotransposition. Systematic Biology. 67: 475-489 |