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| Baker J. (2013) Compliance constants: are they of any real use? Wires Computational Molecular Science. 4: 111-115 |
| Baker J, Janowski T, Wolinski K, et al. (2012) Recent developments in the PQS program Wiley Interdisciplinary Reviews: Computational Molecular Science. 2: 63-72 |
| Baker J, Wolinski K. (2011) An efficient parallel algorithm for the calculation of unrestricted canonical MP2 energies. Journal of Computational Chemistry. 32: 3304-12 |
| Zhang S, Baker J, Pulay P. (2010) A reliable and efficient first principles-based method for predicting pK(a) values. 2. Organic acids. The Journal of Physical Chemistry. A. 114: 432-42 |
| Zhang S, Baker J, Pulay P. (2010) A reliable and efficient first principles-based method for predicting pK(a) values. 1. Methodology. The Journal of Physical Chemistry. A. 114: 425-31 |
| Wolinski K, Baker J. (2010) Geometry optimization in the presence of external forces: a theoretical model for enforced structural changes in molecules Molecular Physics. 108: 1845-1856 |
| Martin J, Baker J, Pulay P. (2009) Comments on the molecular geometry of ferrocene: The dangers of using quantum chemistry programs as black boxes. Journal of Computational Chemistry. 30: 881-3 |
| Baker J, Wolinski K, Malagoli M, et al. (2009) Quantum chemistry in parallel with PQS. Journal of Computational Chemistry. 30: 317-35 |
| Wolinski K, Baker J. (2009) Theoretical predictions of enforced structural changes in molecules Molecular Physics. 107: 2403-2417 |
| Baker J, Wolinski K, Pulay P. (2007) Parallel DFT gradients using the Fourier Transform Coulomb method. Journal of Computational Chemistry. 28: 2581-8 |