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| Pham GM, Hamilton JP, Wood JC, et al. (2020) Construction of a chromosome-scale long-read reference genome assembly for potato. Gigascience. 9 |
| Pham GM, Braz GT, Conway M, et al. (2019) Genome-wide Inference of Somatic Translocation Events During Potato Dihaploid Production. The Plant Genome. 12 |
| Franke J, Kim J, Hamilton JP, et al. (2018) Gene discovery in Gelsemium highlights conserved gene clusters in monoterpene indole alkaloid biosynthesis. Chembiochem : a European Journal of Chemical Biology |
| Manrique-Carpintero NC, Coombs JJ, Pham GM, et al. (2018) Genome Reduction in Tetraploid Potato Reveals Genetic Load, Haplotype Variation, and Loci Associated With Agronomic Traits. Frontiers in Plant Science. 9: 944 |
| Leisner CP, Hamilton JP, Crisovan E, et al. (2018) Genome sequence of M6, a diploid inbred clone of the high glycoalkaloid-producing tuber-bearing potato species Solanum chacoense, reveals residual heterozygosity. The Plant Journal : For Cell and Molecular Biology |
| Zhao D, Hamilton JP, Pham GM, et al. (2017) De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin. Gigascience. 6: 1-7 |
| Pham GM, Newton L, Wiegert-Rininger K, et al. (2017) Extensive genome heterogeneity leads to preferential allele expression and copy number-dependent expression in cultivated potato. The Plant Journal : For Cell and Molecular Biology |
| Wilkins O, Hafemeister C, Plessis A, et al. (2016) EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function in the Response to Water Deficit, High Temperature, and Agricultural Environments. The Plant Cell |
| Hardigan MA, Crisovan E, Hamiltion JP, et al. (2016) Genome reduction uncovers a large dispensable genome and adaptive role for copy number variation in asexually propagated Solanum tuberosum. The Plant Cell |
| Hazzouri KM, Flowers JM, Visser HJ, et al. (2015) Whole genome re-sequencing of date palms yields insights into diversification of a fruit tree crop. Nature Communications. 6: 8824 |