Jernej Ule
Affiliations: | Rockefeller University, New York, NY, United States |
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Sign in to add trainee| Charlotte Anne Capitanchik | grad student | Francis Crick Institute (Evolution Tree) |
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| Monti M, Herman R, Mancini L, et al. (2024) Interrogation of RNA-protein interaction dynamics in bacterial growth. Molecular Systems Biology |
| West C, Capitanchik C, Cheshire C, et al. (2023) nf-core/clipseq - a robust Nextflow pipeline for comprehensive CLIP data analysis. Wellcome Open Research. 8: 286 |
| Horlacher M, Wagner N, Moyon L, et al. (2023) Towards in silico CLIP-seq: predicting protein-RNA interaction via sequence-to-signal learning. Genome Biology. 24: 180 |
| Pederiva C, Trevisan DM, Peirasmaki D, et al. (2023) Control of protein synthesis through mRNA pseudouridylation by dyskerin. Science Advances. 9: eadg1805 |
| Mas AM, Goñi E, Ruiz de Los Mozos I, et al. (2023) ORC1 binds to cis-transcribed RNAs for efficient activation of replication origins. Nature Communications. 14: 4447 |
| Balendra R, Ruiz de Los Mozos I, Odeh HM, et al. (2023) Transcriptome-wide RNA binding analysis of C9orf72 poly(PR) dipeptides. Life Science Alliance. 6 |
| Lin JQ, Khuperkar D, Pavlou S, et al. (2023) HNRNPH1 regulates the neuroprotective cold-shock protein RBM3 expression through poison exon exclusion. The Embo Journal. e113168 |
| Chakrabarti AM, Haberman N, Praznik A, et al. (2023) Data Science Issues in Studying Protein-RNA Interactions with CLIP Technologies. Annual Review of Biomedical Data Science. 1: 235-261 |
| Iosub IA, Klobučar T, Ule J. (2023) Looping in on splicing: CRIC-seq uncovers PTBP1's long-range RNA regulatory rules. Molecular Cell. 83: 1206-1207 |
| Azman MS, Alard EL, Dodel M, et al. (2023) An ERK1/2-driven RNA-binding switch in nucleolin drives ribosome biogenesis and pancreatic tumorigenesis downstream of RAS oncogene. The Embo Journal. e110902 |