| Year |
Citation |
Score |
| 2023 |
Lee WH, Li K, Lu Z. Chemical crosslinking and ligation methods for in vivo analysis of RNA structures and interactions. Methods in Enzymology. 691: 253-281. PMID 37914449 DOI: 10.1016/bs.mie.2023.02.020 |
0.459 |
|
| 2023 |
Zhang M, Li K, Bai J, Van Damme R, Zhang W, Alba M, Stiles BL, Chen JF, Lu Z. A snoRNA-tRNA modification network governs codon-biased cellular states. Proceedings of the National Academy of Sciences of the United States of America. 120: e2312126120. PMID 37792516 DOI: 10.1073/pnas.2312126120 |
0.302 |
|
| 2023 |
Velema WA, Lu Z. Chemical RNA Cross-Linking: Mechanisms, Computational Analysis, and Biological Applications. Jacs Au. 3: 316-332. PMID 36873678 DOI: 10.1021/jacsau.2c00625 |
0.491 |
|
| 2022 |
Zhang M, Hwang IT, Li K, Bai J, Chen JF, Weisman T, Zou JY, Lu Z. Classification and clustering of RNA crosslink-ligation data reveal complex structures and homodimers. Genome Research. PMID 35332099 DOI: 10.1101/gr.275979.121 |
0.491 |
|
| 2022 |
Van Damme R, Li K, Zhang M, Bai J, Lee WH, Yesselman JD, Lu Z, Velema WA. Chemical reversible crosslinking enables measurement of RNA 3D distances and alternative conformations in cells. Nature Communications. 13: 911. PMID 35177610 DOI: 10.1038/s41467-022-28602-3 |
0.487 |
|
| 2021 |
Zhang M, Li K, Bai J, Velema WA, Yu C, van Damme R, Lee WH, Corpuz ML, Chen JF, Lu Z. Optimized photochemistry enables efficient analysis of dynamic RNA structuromes and interactomes in genetic and infectious diseases. Nature Communications. 12: 2344. PMID 33879794 DOI: 10.1038/s41467-021-22552-y |
0.489 |
|
| 2020 |
Lu Z, Guo JK, Wei Y, Dou DR, Zarnegar B, Ma Q, Li R, Zhao Y, Liu F, Choudhry H, Khavari PA, Chang HY. Structural modularity of the XIST ribonucleoprotein complex. Nature Communications. 11: 6163. PMID 33268787 DOI: 10.1038/s41467-020-20040-3 |
0.616 |
|
| 2019 |
Zhang W, Yang SL, Yang M, Herrlinger S, Shao Q, Collar JL, Fierro E, Shi Y, Liu A, Lu H, Herring BE, Guo ML, Buch S, Zhao Z, Xu J, ... Lu Z, et al. Modeling microcephaly with cerebral organoids reveals a WDR62-CEP170-KIF2A pathway promoting cilium disassembly in neural progenitors. Nature Communications. 10: 2612. PMID 31197141 DOI: 10.1038/S41467-019-10497-2 |
0.319 |
|
| 2018 |
Lu Z, Chang HY. The RNA Base-Pairing Problem and Base-Pairing Solutions. Cold Spring Harbor Perspectives in Biology. 10. PMID 30510063 DOI: 10.1101/Cshperspect.A034926 |
0.653 |
|
| 2018 |
Lu Z, Gong J, Zhang QC. PARIS: Psoralen Analysis of RNA Interactions and Structures with High Throughput and Resolution. Methods in Molecular Biology (Clifton, N.J.). 1649: 59-84. PMID 29130190 DOI: 10.1007/978-1-4939-7213-5_4 |
0.673 |
|
| 2017 |
Gong J, Shao D, Xu K, Lu Z, Lu ZJ, Yang YT, Zhang QC. RISE: a database of RNA interactome from sequencing experiments. Nucleic Acids Research. PMID 29040625 DOI: 10.1093/Nar/Gkx864 |
0.73 |
|
| 2017 |
Lu Z, Carter AC, Chang HY. Mechanistic insights in X-chromosome inactivation. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 28947655 DOI: 10.1098/Rstb.2016.0356 |
0.534 |
|
| 2016 |
Lu Z, Zhang QC, Lee B, Flynn RA, Smith MA, Robinson JT, Davidovich C, Gooding AR, Goodrich KJ, Mattick JS, Mesirov JP, Cech TR, Chang HY. RNA Duplex Map in Living Cells Reveals Higher-Order Transcriptome Structure. Cell. PMID 27180905 DOI: 10.1016/J.Cell.2016.04.028 |
0.752 |
|
| 2016 |
Lu Z, Chang HY. Decoding the RNA structurome. Current Opinion in Structural Biology. 36: 142-148. PMID 26923056 DOI: 10.1016/J.Sbi.2016.01.007 |
0.677 |
|
| 2015 |
Hu X, Wu Y, Lu ZJ, Yip KY. Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations. Briefings in Bioinformatics. PMID 26655457 DOI: 10.1093/bib/bbv106 |
0.499 |
|
| 2015 |
Stein S, Lu ZX, Bahrami-Samani E, Park JW, Xing Y. Discover hidden splicing variations by mapping personal transcriptomes to personal genomes. Nucleic Acids Research. PMID 26578562 DOI: 10.1093/Nar/Gkv1099 |
0.456 |
|
| 2015 |
Lu Z, Filonov GS, Noto JJ, Schmidt CA, Hatkevich TL, Wen Y, Jaffrey SR, Matera AG. Metazoan tRNA introns generate stable circular RNAs in vivo. Rna (New York, N.Y.). PMID 26194134 DOI: 10.1261/Rna.052944.115 |
0.67 |
|
| 2014 |
Lu Z, Matera AG. Developmental analysis of spliceosomal snRNA isoform expression. G3 (Bethesda, Md.). 5: 103-10. PMID 25416704 DOI: 10.1534/G3.114.015735 |
0.683 |
|
| 2014 |
Lu Z, Matera AG. Vicinal: a method for the determination of ncRNA ends using chimeric reads from RNA-seq experiments. Nucleic Acids Research. 42: e79. PMID 24623808 DOI: 10.1093/Nar/Gku207 |
0.725 |
|
| 2014 |
Lu Z, Guan X, Schmidt CA, Matera AG. RIP-seq analysis of eukaryotic Sm proteins identifies three major categories of Sm-containing ribonucleoproteins. Genome Biology. 15: R7. PMID 24393626 DOI: 10.1186/Gb-2014-15-1-R7 |
0.784 |
|
| 2013 |
Garcia EL, Lu Z, Meers MP, Praveen K, Matera AG. Developmental arrest of Drosophila survival motor neuron (Smn) mutants accounts for differences in expression of minor intron-containing genes. Rna (New York, N.Y.). 19: 1510-6. PMID 24006466 DOI: 10.1261/Rna.038919.113 |
0.675 |
|
| 2009 |
Wang H, Zhang SY, Wang S, Lu J, Wu W, Weng L, Chen D, Zhang Y, Lu Z, Yang J, Chen Y, Zhang X, Chen X, Xi C, Lu D, et al. REV3L confers chemoresistance to cisplatin in human gliomas: the potential of its RNAi for synergistic therapy. Neuro-Oncology. 11: 790-802. PMID 19289490 DOI: 10.1215/15228517-2009-015 |
0.355 |
|
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