☰

Anna-Sapfo Malaspinas - Publications

Affiliations: 
2011 Integrative Biology University of California, Berkeley, Berkeley, CA, United States 
Tree Info Similar researchers PubMed Report error

39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Sousa da Mota B, Rubinacci S, Cruz Dávalos DI, G Amorim CE, Sikora M, Johannsen NN, Szmyt MH, Włodarczak P, Szczepanek A, Przybyła MM, Schroeder H, Allentoft ME, Willerslev E, Malaspinas AS, Delaneau O. Imputation of ancient human genomes. Nature Communications. 14: 3660. PMID 37339987 DOI: 10.1038/s41467-023-39202-0  0.45
2023 Neuenschwander S, Cruz Dávalos DI, Anchieri L, Sousa da Mota B, Bozzi D, Rubinacci S, Delaneau O, Rasmussen S, Malaspinas AS. Mapache: a flexible pipeline to map ancient DNA. Bioinformatics (Oxford, England). PMID 36637197 DOI: 10.1093/bioinformatics/btad028  0.699
2022 Arizmendi Cárdenas YO, Neuenschwander S, Malaspinas AS. Benchmarking metagenomics classifiers on ancient viral DNA: a simulation study. Peerj. 10: e12784. PMID 35356467 DOI: 10.7717/peerj.12784  0.637
2021 Clemente F, Unterländer M, Dolgova O, Amorim CEG, Coroado-Santos F, Neuenschwander S, Ganiatsou E, Cruz Dávalos DI, Anchieri L, Michaud F, Winkelbach L, Blöcher J, Arizmendi Cárdenas YO, Sousa da Mota B, Kalliga E, ... ... Malaspinas AS, et al. The genomic history of the Aegean palatial civilizations. Cell. PMID 33930288 DOI: 10.1016/j.cell.2021.03.039  0.689
2020 Dehasque M, Ávila-Arcos MC, Díez-Del-Molino D, Fumagalli M, Guschanski K, Lorenzen ED, Malaspinas AS, Marques-Bonet T, Martin MD, Murray GGR, Papadopulos AST, Therkildsen NO, Wegmann D, Dalén L, Foote AD. Inference of natural selection from ancient DNA. Evolution Letters. 4: 94-108. PMID 32313686 DOI: 10.1002/evl3.165  0.367
2019 Raghavan M, Schroeder H, Malaspinas AS. An Ancient Genome from the Indus Valley Civilization. Cell. 179: 586-588. PMID 31626767 DOI: 10.1016/J.Cell.2019.09.027  0.475
2019 Moreno-Mayar JV, Korneliussen TS, Dalal J, Renaud G, Albrechtsen A, Nielsen R, Malaspinas AS. A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data. Bioinformatics (Oxford, England). PMID 31504166 DOI: 10.1093/Bioinformatics/Btz660  0.797
2018 Wright JL, Wasef S, Heupink TH, Westaway MC, Rasmussen S, Pardoe C, Fourmile GG, Young M, Johnson T, Slade J, Kennedy R, Winch P, Pappin M, Wales T, Bates WB, ... ... Malaspinas AS, et al. Ancient nuclear genomes enable repatriation of Indigenous human remains. Science Advances. 4: eaau5064. PMID 30585290 DOI: 10.1126/Sciadv.Aau5064  0.605
2018 Moreno-Mayar JV, Vinner L, de Barros Damgaard P, de la Fuente C, Chan J, Spence JP, Allentoft ME, Vimala T, Racimo F, Pinotti T, Rasmussen S, Margaryan A, Iraeta Orbegozo M, Mylopotamitaki D, Wooller M, ... ... Malaspinas AS, et al. Early human dispersals within the Americas. Science (New York, N.Y.). PMID 30409807 DOI: 10.1126/Science.Aav2621  0.819
2018 Cruz-Dávalos DI, Nieves-Colón MA, Sockell A, Poznik GD, Schroeder H, Stone AC, Bustamante CD, Malaspinas AS, Ávila-Arcos MC. In-solution Y-chromosome capture-enrichment on ancient DNA libraries. Bmc Genomics. 19: 608. PMID 30107783 DOI: 10.1186/S12864-018-4945-X  0.785
2018 McColl H, Racimo F, Vinner L, Demeter F, Gakuhari T, Moreno-Mayar JV, van Driem G, Gram Wilken U, Seguin-Orlando A, de la Fuente Castro C, Wasef S, Shoocongdej R, Souksavatdy V, Sayavongkhamdy T, Saidin MM, ... ... Malaspinas AS, et al. The prehistoric peopling of Southeast Asia. Science (New York, N.Y.). 361: 88-92. PMID 29976827 DOI: 10.1126/Science.Aat3628  0.811
2018 Wutke S, Sandoval-Castellanos E, Benecke N, Döhle HJ, Friederich S, Gonzalez J, Hofreiter M, Lõugas L, Magnell O, Malaspinas AS, Morales-Muñiz A, Orlando L, Reissmann M, Trinks A, Ludwig A. Decline of genetic diversity in ancient domestic stallions in Europe. Science Advances. 4: eaap9691. PMID 29675468 DOI: 10.1126/Sciadv.Aap9691  0.392
2018 de la Fuente C, Ávila-Arcos MC, Galimany J, Carpenter ML, Homburger JR, Blanco A, Contreras P, Cruz Dávalos D, Reyes O, San Roman M, Moreno-Estrada A, Campos PF, Eng C, Huntsman S, Burchard EG, ... Malaspinas AS, et al. Genomic insights into the origin and diversification of late maritime hunter-gatherers from the Chilean Patagonia. Proceedings of the National Academy of Sciences of the United States of America. PMID 29632188 DOI: 10.1073/Pnas.1715688115  0.581
2018 Ponce de León MS, Koesbardiati T, Weissmann JD, Milella M, Reyna-Blanco CS, Suwa G, Kondo O, Malaspinas AS, White TD, Zollikofer CPE. Human bony labyrinth is an indicator of population history and dispersal from Africa. Proceedings of the National Academy of Sciences of the United States of America. PMID 29610337 DOI: 10.1073/Pnas.1717873115  0.783
2018 Moreno-Mayar JV, Potter BA, Vinner L, Steinrücken M, Rasmussen S, Terhorst J, Kamm JA, Albrechtsen A, Malaspinas AS, Sikora M, Reuther JD, Irish JD, Malhi RS, Orlando L, Song YS, et al. Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans. Nature. 553: 203-207. PMID 29323294 DOI: 10.1038/Nature25173  0.77
2017 Dortch J, Malaspinas A. Madjedbebe and genomic histories of Aboriginal Australia Australian Archaeology. 83: 174-177. DOI: 10.1080/03122417.2017.1408546  0.521
2016 Malaspinas AS, Westaway MC, Muller C, Sousa VC, Lao O, Alves I, Bergström A, Athanasiadis G, Cheng JY, Crawford JE, Heupink TH, Macholdt E, Peischl S, Rasmussen S, Schiffels S, et al. A genomic history of Aboriginal Australia. Nature. PMID 27654914 DOI: 10.1038/Nature18299  0.764
2015 Malaspinas AS. Methods to characterize selective sweeps using time serial samples: an ancient DNA perspective. Molecular Ecology. PMID 26613371 DOI: 10.1111/Mec.13492  0.482
2015 Raghavan M, Steinrücken M, Harris K, Schiffels S, Rasmussen S, DeGiorgio M, Albrechtsen A, Valdiosera C, Ávila-Arcos MC, Malaspinas AS, Eriksson A, Moltke I, Metspalu M, Homburger JR, Wall J, et al. Genomic evidence for the Pleistocene and recent population history of Native Americans. Science (New York, N.Y.). PMID 26198033 DOI: 10.1126/Science.Aab3884  0.802
2015 Allentoft ME, Sikora M, Sjögren KG, Rasmussen S, Rasmussen M, Stenderup J, Damgaard PB, Schroeder H, Ahlström T, Vinner L, Malaspinas AS, Margaryan A, Higham T, Chivall D, Lynnerup N, et al. Population genomics of Bronze Age Eurasia. Nature. 522: 167-72. PMID 26062507 DOI: 10.1038/Nature14507  0.609
2015 Schroeder H, Ávila-Arcos MC, Malaspinas AS, Poznik GD, Sandoval-Velasco M, Carpenter ML, Moreno-Mayar JV, Sikora M, Johnson PL, Allentoft ME, Samaniego JA, Haviser JB, Dee MW, Stafford TW, Salas A, et al. Genome-wide ancestry of 17th-century enslaved Africans from the Caribbean. Proceedings of the National Academy of Sciences of the United States of America. 112: 3669-73. PMID 25755263 DOI: 10.1073/Pnas.1421784112  0.821
2015 Ávila-Arcos MC, Sandoval-Velasco M, Schroeder H, Carpenter ML, Malaspinas AS, Wales N, Peñaloza F, Bustamante CD, Gilbert MTP. Comparative performance of two whole-genome capture methodologies on ancient DNA Illumina libraries Methods in Ecology and Evolution. 6: 725-734. DOI: 10.1111/2041-210X.12353  0.454
2014 Malaspinas AS, Lao O, Schroeder H, Rasmussen M, Raghavan M, Moltke I, Campos PF, Sagredo FS, Rasmussen S, Gonçalves VF, Albrechtsen A, Allentoft ME, Johnson PL, Li M, Reis S, et al. Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil. Current Biology : Cb. 24: R1035-7. PMID 25455029 DOI: 10.1016/J.Cub.2014.09.078  0.83
2014 Moreno-Mayar JV, Rasmussen S, Seguin-Orlando A, Rasmussen M, Liang M, Flåm ST, Lie BA, Gilfillan GD, Nielsen R, Thorsby E, Willerslev E, Malaspinas AS. Genome-wide ancestry patterns in Rapanui suggest pre-European admixture with Native Americans. Current Biology : Cb. 24: 2518-25. PMID 25447991 DOI: 10.1016/J.Cub.2014.09.057  0.764
2014 Seguin-Orlando A, Korneliussen TS, Sikora M, Malaspinas AS, Manica A, Moltke I, Albrechtsen A, Ko A, Margaryan A, Moiseyev V, Goebel T, Westaway M, Lambert D, Khartanovich V, Wall JD, et al. Genomic structure in Europeans dating back at least 36,200 years Science. 346: 1113-1118. PMID 25378462 DOI: 10.1126/Science.Aaa0114  0.681
2014 Raghavan M, DeGiorgio M, Albrechtsen A, Moltke I, Skoglund P, Korneliussen TS, Grønnow B, Appelt M, Gulløv HC, Friesen TM, Fitzhugh W, Malmström H, Rasmussen S, Olsen J, Melchior L, ... ... Malaspinas AS, et al. The genetic prehistory of the New World Arctic. Science (New York, N.Y.). 345: 1255832. PMID 25170159 DOI: 10.1126/Science.1255832  0.643
2014 Malaspinas AS, Tange O, Moreno-Mayar JV, Rasmussen M, DeGiorgio M, Wang Y, Valdiosera CE, Politis G, Willerslev E, Nielsen R. bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS) Bioinformatics (Oxford, England). 30: 2962-2964. PMID 24974206 DOI: 10.1093/Bioinformatics/Btu410  0.759
2014 Rasmussen M, Anzick SL, Waters MR, Skoglund P, DeGiorgio M, Stafford TW, Rasmussen S, Moltke I, Albrechtsen A, Doyle SM, Poznik GD, Gudmundsdottir V, Yadav R, Malaspinas AS, White SS, et al. The genome of a Late Pleistocene human from a Clovis burial site in western Montana. Nature. 506: 225-9. PMID 24522598 DOI: 10.1038/Nature13025  0.647
2013 Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, ... Malaspinas AS, et al. Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature. 499: 74-8. PMID 23803765 DOI: 10.1038/Nature12323  0.749
2013 Gonçalves VF, Stenderup J, Rodrigues-Carvalho C, Silva HP, Gonçalves-Dornelas H, Líryo A, Kivisild T, Malaspinas AS, Campos PF, Rasmussen M, Willerslev E, Pena SD. Identification of Polynesian mtDNA haplogroups in remains of Botocudo Amerindians from Brazil. Proceedings of the National Academy of Sciences of the United States of America. 110: 6465-9. PMID 23576724 DOI: 10.1073/Pnas.1217905110  0.446
2012 Malaspinas AS, Malaspinas O, Evans SN, Slatkin M. Estimating allele age and selection coefficient from time-serial data. Genetics. 192: 599-607. PMID 22851647 DOI: 10.1534/Genetics.112.140939  0.569
2012 Yang MA, Malaspinas AS, Durand EY, Slatkin M. Ancient structure in Africa unlikely to explain Neanderthal and non-African genetic similarity. Molecular Biology and Evolution. 29: 2987-95. PMID 22513287 DOI: 10.1093/Molbev/Mss117  0.779
2011 Malaspinas AS, Eriksson N, Huggins P. Parametric analysis of alignment and phylogenetic uncertainty. Bulletin of Mathematical Biology. 73: 795-810. PMID 21409513 DOI: 10.1007/S11538-010-9610-8  0.317
2011 Malaspinas AS, Slatkin M, Song YS. Match probabilities in a finite, subdivided population. Theoretical Population Biology. 79: 55-63. PMID 21266180 DOI: 10.1016/J.Tpb.2011.01.003  0.564
2010 Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH, Hansen NF, Durand EY, Malaspinas AS, Jensen JD, Marques-Bonet T, et al. A draft sequence of the Neandertal genome. Science (New York, N.Y.). 328: 710-22. PMID 20448178 DOI: 10.1126/Science.1188021  0.813
2009 Ludwig A, Pruvost M, Reissmann M, Benecke N, Brockmann GA, Castaños P, Cieslak M, Lippold S, Llorente L, Malaspinas AS, Slatkin M, Hofreiter M. Coat color variation at the beginning of horse domestication. Science (New York, N.Y.). 324: 485. PMID 19390039 DOI: 10.1126/Science.1172750  0.54
2008 Green RE, Malaspinas AS, Krause J, Briggs AW, Johnson PL, Uhler C, Meyer M, Good JM, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano HA, Ronan M, Rothberg JM, et al. A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell. 134: 416-26. PMID 18692465 DOI: 10.1016/J.Cell.2008.06.021  0.722
2008 Krause J, Unger T, Noçon A, Malaspinas AS, Kolokotronis SO, Stiller M, Soibelzon L, Spriggs H, Dear PH, Briggs AW, Bray SC, O'Brien SJ, Rabeder G, Matheus P, Cooper A, et al. Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary. Bmc Evolutionary Biology. 8: 220. PMID 18662376 DOI: 10.1186/1471-2148-8-220  0.649
2007 Rohland N, Malaspinas AS, Pollack JL, Slatkin M, Matheus P, Hofreiter M. Proboscidean mitogenomics: chronology and mode of elephant evolution using mastodon as outgroup. Plos Biology. 5: e207. PMID 17676977 DOI: 10.1371/Journal.Pbio.0050207  0.662
Show low-probability matches.