| Year |
Citation |
Score |
| 2019 |
Amodei D, Egertson J, MacLean BX, Johnson R, Merrihew GE, Keller A, Marsh D, Vitek O, Mallick P, MacCoss MJ. Improving Precursor Selectivity in Data-Independent Acquisition Using Overlapping Windows. Journal of the American Society For Mass Spectrometry. PMID 30671891 DOI: 10.1007/S13361-018-2122-8 |
0.685 |
|
| 2018 |
Searle BC, Pino LK, Egertson JD, Ting YS, Lawrence RT, MacLean BX, Villén J, MacCoss MJ. Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry. Nature Communications. 9: 5128. PMID 30510204 DOI: 10.1038/S41467-018-07454-W |
0.786 |
|
| 2018 |
Kim YJ, Sweet SM, Egertson JD, Sedgewick AJ, Woo S, Liao WL, Merrihew GE, Searle BC, Vaske C, Heaton R, MacCoss MJ, Hembrough T. Data-independent acquisition mass spectrometry to quantify protein levels in FFPE tumor biopsies for molecular diagnostics. Journal of Proteome Research. PMID 30481034 DOI: 10.1021/Acs.Jproteome.8B00699 |
0.731 |
|
| 2018 |
MacLean BX, Pratt BS, Egertson JD, MacCoss MJ, Smith RD, Baker ES. Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions. Journal of the American Society For Mass Spectrometry. PMID 30047074 DOI: 10.1007/S13361-018-2028-5 |
0.654 |
|
| 2018 |
Litichevskiy L, Peckner R, Abelin JG, Asiedu JK, Creech AL, Davis JF, Davison D, Dunning CM, Egertson JD, Egri S, Gould J, Ko T, Johnson SA, Lahr DL, Lam D, et al. A Library of Phosphoproteomic and Chromatin Signatures for Characterizing Cellular Responses to Drug Perturbations. Cell Systems. PMID 29655704 DOI: 10.1016/J.Cels.2018.03.012 |
0.542 |
|
| 2018 |
Peckner R, Myers SA, Jacome ASV, Egertson JD, Abelin JG, MacCoss MJ, Carr SA, Jaffe JD. Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics. Nature Methods. PMID 29608554 DOI: 10.1038/Nmeth.4643 |
0.712 |
|
| 2018 |
Galitzine C, Egertson J, Abbatiello SE, Henderson CM, Pino L, MacCoss MJ, Hoofnagle AN, Vitek O. Nonlinear regression improves accuracy of characterization of multiplexed mass spectrometric assays. Molecular & Cellular Proteomics : McP. PMID 29438992 DOI: 10.1074/Mcp.Ra117.000322 |
0.768 |
|
| 2018 |
Beck K, Camp N, Bereman M, Bollinger J, Egertson J, MacCoss M, Wolf-Yadlin A. Development of Selected Reaction Monitoring Methods to Systematically Quantify Kinase Abundance and Phosphorylation Stoichiometry in Human Samples. Methods in Molecular Biology (Clifton, N.J.). 1636: 353-369. PMID 28730491 DOI: 10.1007/978-1-4939-7154-1_23 |
0.733 |
|
| 2018 |
Campbell M, Gaffrey M, Egertson J, Merrihew G, Perez M, Wang L, Villen J, MacCoss M, Qian W, Marcinek D. Reversal of age related post-translational modifications improves mitochondrial and skeletal muscle function through redox dependent mechanisms Free Radical Biology and Medicine. 128: S124. DOI: 10.1016/J.Freeradbiomed.2018.10.305 |
0.494 |
|
| 2017 |
Ting YS, Egertson JD, Bollinger JG, Searle BC, Payne SH, Noble WS, MacCoss MJ. PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data. Nature Methods. PMID 28783153 DOI: 10.1038/Nmeth.4390 |
0.809 |
|
| 2016 |
Bollinger JG, Stergachis AB, Johnson RS, Egertson JD, MacCoss MJ. Selecting Optimal Peptides for Targeted Proteomic Experiments in Human Plasma Using In Vitro Synthesized Proteins as Analytical Standards. Methods in Molecular Biology (Clifton, N.J.). 1410: 207-21. PMID 26867746 DOI: 10.1007/978-1-4939-3524-6_12 |
0.782 |
|
| 2015 |
Ting YS, Egertson JD, Payne SH, Kim S, MacLean B, Käll L, Aebersold RH, Smith RD, Noble WS, MacCoss MJ. Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data. Molecular & Cellular Proteomics : McP. PMID 26217018 DOI: 10.1074/Mcp.O114.047035 |
0.722 |
|
| 2015 |
Eng JK, Hoopmann MR, Jahan TA, Egertson JD, Noble WS, MacCoss MJ. A Deeper Look into Comet-Implementation and Features. Journal of the American Society For Mass Spectrometry. PMID 26115965 DOI: 10.1007/S13361-015-1179-X |
0.682 |
|
| 2015 |
Searle BC, Egertson JD, Bollinger JG, Stergachis AB, MacCoss MJ. Using Data Independent Acquisition (DIA) to Model High-responding Peptides for Targeted Proteomics Experiments. Molecular & Cellular Proteomics : McP. 14: 2331-40. PMID 26100116 DOI: 10.1074/Mcp.M115.051300 |
0.766 |
|
| 2015 |
Egertson JD, MacLean B, Johnson R, Xuan Y, MacCoss MJ. Multiplexed peptide analysis using data-independent acquisition and Skyline. Nature Protocols. 10: 887-903. PMID 25996789 DOI: 10.1038/Nprot.2015.055 |
0.675 |
|
| 2013 |
Egertson JD, Kuehn A, Merrihew GE, Bateman NW, MacLean BX, Ting YS, Canterbury JD, Marsh DM, Kellmann M, Zabrouskov V, Wu CC, MacCoss MJ. Multiplexed MS/MS for improved data-independent acquisition Nature Methods. 10: 744-746. PMID 23793237 DOI: 10.1038/Nmeth.2528 |
0.659 |
|
| 2012 |
Chambers MC, Maclean B, Burke R, Amodei D, Ruderman DL, Neumann S, Gatto L, Fischer B, Pratt B, Egertson J, Hoff K, Kessner D, Tasman N, Shulman N, Frewen B, et al. A cross-platform toolkit for mass spectrometry and proteomics. Nature Biotechnology. 30: 918-20. PMID 23051804 DOI: 10.1038/Nbt.2377 |
0.634 |
|
| 2012 |
Egertson JD, Eng JK, Bereman MS, Hsieh EJ, Merrihew GE, MacCoss MJ. De novo correction of mass measurement error in low resolution tandem MS spectra for shotgun proteomics Journal of the American Society For Mass Spectrometry. 23: 2075-2082. PMID 23007965 DOI: 10.1007/S13361-012-0482-Z |
0.736 |
|
| 2012 |
Bereman MS, Canterbury JD, Egertson JD, Horner J, Remes PM, Schwartz J, Zabrouskov V, MacCoss MJ. Evaluation of front-end higher energy collision-induced dissociation on a benchtop dual-pressure linear ion trap mass spectrometer for shotgun proteomics Analytical Chemistry. 84: 1533-1539. PMID 22192247 DOI: 10.1021/Ac203210A |
0.77 |
|
| 2011 |
Bereman MS, Egertson JD, Maccoss MJ. Comparison between procedures using SDS for shotgun proteomic analyses of complex samples Proteomics. 11: 2931-2935. PMID 21656683 DOI: 10.1002/Pmic.201100045 |
0.751 |
|
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