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Afra Panahi, Ph.D. - Publications

Affiliations: 
Chemistry - Doctor of Philosophy Michigan State University, East Lansing, MI 
Area:
Biophysics, Biochemistry
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18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Torabifard H, Panahi A, Brooks CL. M2 amphipathic helices facilitate pH-dependent conformational transition in influenza A virus. Proceedings of the National Academy of Sciences of the United States of America. PMID 32015120 DOI: 10.1073/Pnas.1913385117  0.527
2020 Bogart BM, Panahi A. Conformational Sampling of pH-low Insertion Peptides in Multicomponent Bilyayers: Effects of Charged Lipids and Protonation States Biophysical Journal. 118: 211a. DOI: 10.1016/J.Bpj.2019.11.1261  0.413
2019 Bandara A, Panahi A, Pantelopulos GA, Nagai T, Straub JE. Exploring the impact of proteins on the line tension of a phase-separating ternary lipid mixture. The Journal of Chemical Physics. 150: 204702. PMID 31153187 DOI: 10.1063/1.5091450  0.363
2018 Morgado I, Panahi A, Burwash AG, Das M, Straub JE, Gursky O. Molecular insights into human hereditary apoA-I amyloidosis caused by Glu34Lys mutation. Biochemistry. PMID 30184436 DOI: 10.1021/Acs.Biochem.8B00817  0.354
2018 Ekanayaka Mudiyanselage AB, Panahi A, Pantelopulos GA, Straub JE. Domain Interfaces Facilitate Protein Association and Aggregation in Multicomponent Lipid Bilayers Biophysical Journal. 114: 72a. DOI: 10.1016/J.Bpj.2017.11.439  0.319
2017 Pantelopulos GA, Nagai T, Bandara A, Panahi A, Straub JE. Critical size dependence of domain formation observed in coarse-grained simulations of bilayers composed of ternary lipid mixtures. The Journal of Chemical Physics. 147: 095101. PMID 28886648 DOI: 10.1063/1.4999709  0.347
2016 Bandara A, Panahi A, Pantelopulos GA, Straub JE. Exploring the structure and stability of cholesterol dimer formation in multicomponent lipid bilayers. Journal of Computational Chemistry. PMID 27761918 DOI: 10.1002/Jcc.24516  0.353
2016 Panahi A, Bandara A, Pantelopulos GA, Dominguez L, Straub JE. Specific Binding of Cholesterol to C99 Domain of Amyloid Precursor Protein Depends Critically on Charge State of Protein. The Journal of Physical Chemistry Letters. PMID 27525349 DOI: 10.1021/Acs.Jpclett.6B01624  0.339
2015 Ding B, Panahi A, Ho JJ, Laaser JE, Brooks CL, Zanni MT, Chen Z. Probing Site-Specific Structural Information of Peptides at Model Membrane Interface In Situ. Journal of the American Chemical Society. 137: 10190-8. PMID 26241117 DOI: 10.1021/Jacs.5B04024  0.588
2015 Panahi A, Brooks CL. Membrane environment modulates the pKa values of transmembrane helices. The Journal of Physical Chemistry. B. 119: 4601-7. PMID 25734901 DOI: 10.1021/Acs.Jpcb.5B00289  0.567
2015 Ding B, Panahi A, Ho JJ, Laaser JE, Brooks CL, Zanni MT, Chen Z. Probing site-specific structural information of peptides at model membrane interface in situ Journal of the American Chemical Society. 137: 10190-10198. DOI: 10.1021/jacs.5b04024  0.528
2015 Panahi A, Brooks CL. Membrane Environment Modulates the pKa Values of Transmembrane Helices Journal of Physical Chemistry B. 119: 4601-4607. DOI: 10.1021/acs.jpcb.5b00289  0.506
2014 Law SM, Ahlstrom LS, Panahi A, Brooks CL. Hamiltonian Mapping Revisited: Calibrating Minimalist Models to Capture Molecular Recognition by Intrinsically Disordered Proteins. The Journal of Physical Chemistry Letters. 5: 3441-3444. PMID 25289116 DOI: 10.1021/Jz501811K  0.595
2014 Kar P, Gopal SM, Cheng YM, Panahi A, Feig M. Transferring the PRIMO Coarse-Grained Force Field to the Membrane Environment: Simulations of Membrane Proteins and Helix-Helix Association. Journal of Chemical Theory and Computation. 10: 3459-3472. PMID 25136271 DOI: 10.1021/Ct500443V  0.649
2014 Panahi A, Brooks CL. Exploring pKa Values for Buried Residues in Membrane Bilayers using Constant pH Molecular Dynamics Simulations Biophysical Journal. 106: 640a. DOI: 10.1016/J.Bpj.2013.11.3542  0.611
2013 Panahi A, Feig M. Dynamic Heterogeneous Dielectric Generalized Born (DHDGB): An implicit membrane model with a dynamically varying bilayer thickness. Journal of Chemical Theory and Computation. 9: 1709-1719. PMID 23585740 DOI: 10.1021/Ct300975K  0.593
2011 Jaskierny AJ, Panahi A, Feig M. Effect of flanking residues on the conformational sampling of the internal fusion peptide from Ebola virus. Proteins. 79: 1109-17. PMID 21246633 DOI: 10.1002/Prot.22947  0.619
2010 Panahi A, Feig M. Conformational sampling of influenza fusion peptide in membrane bilayers as a function of termini and protonation states. The Journal of Physical Chemistry. B. 114: 1407-16. PMID 20043654 DOI: 10.1021/Jp907366G  0.624
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