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Jefferson D. Knight, Ph.D. - Publications

Affiliations: 
2010- Chemistry CU Denver 
Area:
Protein-Lipid Interactions, Structural Biology
Website:
http://www.ucdenver.edu/academics/colleges/CLAS/Departments/chemistry/Research/Showcase/Pages/Jefferson-Knight.aspx
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53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Beaven AH, Bikkumalla V, Chon NL, Matthews AE, Lin H, Knight JD, Sodt AJ. Synaptotagmin 7 C2 domains induce membrane curvature stress via electrostatic interactions and the wedge mechanism. Biorxiv : the Preprint Server For Biology. PMID 38313280 DOI: 10.1101/2024.01.10.575084  0.585
2023 Chon NL, Tran S, Miller CS, Lin H, Knight JD. A Conserved Electrostatic Membrane-Binding Surface in Synaptotagmin-Like Proteins Revealed Using Molecular Phylogenetic Analysis and Homology Modeling. Protein Science : a Publication of the Protein Society. e4850. PMID 38038838 DOI: 10.1002/pro.4850  0.788
2023 Chon NL, Tran S, Miller CS, Lin H, Knight JD. A Conserved Electrostatic Membrane-Binding Surface in Synaptotagmin-Like Proteins Revealed Using Molecular Phylogenetic Analysis and Homology Modeling. Biorxiv : the Preprint Server For Biology. PMID 37502952 DOI: 10.1101/2023.07.13.548768  0.798
2020 Alnaas AA, Watson-Siriboe A, Tran S, Negussie M, Henderson JA, Osterberg JR, Lee Chon N, Harrott BM, Oviedo J, Lyakhova T, Michel C, Reisdorph N, Reisdorph R, Shearn CT, Lin H, ... Knight JD, et al. Multivalent lipid targeting by the calcium-independent C2A domain of synaptotagmin-like protein 4/ granuphilin. The Journal of Biological Chemistry. PMID 33277360 DOI: 10.1074/jbc.RA120.014618  0.82
2020 Spotts T, Flores D, Watson-Siriboe A, Jones DN, Zweckstetter M, Knight J. Biophysical Origins of Calcium-Inhibited Membrane Binding by the C2A Domain of Synaptotagmin-Like Protein 2 Biophysical Journal. 118: 560a. DOI: 10.1016/J.Bpj.2019.11.3057  0.811
2020 Negussie M, Tran S, Chon NL, Oviedo J, Alnaas A, Knight J, Lin H. Electrostatic Membrane Interaction of Synaptotagmin-Like Protein 4: Simulations of Mutant C2A Domains Biophysical Journal. 118: 527a-528a. DOI: 10.1016/J.Bpj.2019.11.2897  0.803
2020 Chon NL, Tran S, Miller CS, Lin H, Knight JD. Using High-Throughput Structure Prediction and Evolutionary Alignment to Map Electrostatic Protein-Membrane Interactions Biophysical Journal. 118: 394a-395a. DOI: 10.1016/J.Bpj.2019.11.2244  0.724
2019 Tran HT, Anderson LH, Knight JD. Membrane-Binding Cooperativity and Coinsertion by C2AB Tandem Domains of Synaptotagmins 1 and 7. Biophysical Journal. PMID 30795874 DOI: 10.1016/J.Bpj.2019.01.035  0.822
2019 Alnaas AA, Oviedo J, Siriboe A, Tran S, Negussie M, Lin H, Knight J. Membrane Binding by Synaptotagmin-Like Protein 4: Site Directed Mutagenesis of the Lipid Interaction Surface Biophysical Journal. 116: 518a. DOI: 10.1016/J.Bpj.2018.11.2794  0.781
2019 Negussie M, Tran S, Chon NL, Oviedo J, Alnaas A, Lin H, Knight J. Membrane Binding of Synaptotagmin-Like Protein 4: Insight from Molecular Dynamics Simulations Biophysical Journal. 116: 372a. DOI: 10.1016/J.Bpj.2018.11.2025  0.762
2018 Schenk NA, Dahl PJ, Hanna MG, Audhya A, Tall GG, Knight JD, Anantharam A. A simple supported tubulated bilayer system for evaluating protein-mediated membrane remodeling. Chemistry and Physics of Lipids. PMID 30012406 DOI: 10.1016/J.Chemphyslip.2018.06.002  0.786
2018 MacDougall DD, Lin Z, Chon NL, Jackman SL, Lin H, Knight JD, Anantharam A. The high-affinity calcium sensor synaptotagmin-7 serves multiple roles in regulated exocytosis. The Journal of General Physiology. PMID 29794152 DOI: 10.1085/Jgp.201711944  0.693
2018 Bendahmane M, Bohannon KP, Bradberry MM, Rao TC, Schmidtke MW, Abbineni PS, Chon NL, Tran S, Lin H, Chapman ER, Knight JD, Anantharam A. The synaptotagmin C2B domain calcium-binding loops modulate the rate of fusion pore expansion. Molecular Biology of the Cell. PMID 29444959 DOI: 10.1091/Mbc.E17-11-0623  0.795
2018 Dahl PJ, Schenk NA, Ranski AH, Hanna MG, Audhya A, Tall GG, Knight JD, Anantharam A. Supported Tubulated Bilayers: A Novel System for Evaluating Protein-Mediated Membrane Remodeling Biophysical Journal. 114: 612a. DOI: 10.1016/J.Bpj.2017.11.3749  0.776
2018 Bendahmane M, Bohannon KP, Rao TC, Michael SW, Abbineni P, Ranski AH, Bradberry MM, Tran S, Chon NL, Knight JD, Lin H, Chapman ER, Anantharam A. The Synaptotagmin Calcium-Binding Loops Modulate the Rate of Fusion Pore Expansion Biophysical Journal. 114: 282a. DOI: 10.1016/J.Bpj.2017.11.1623  0.69
2018 Spotts T, Willstead S, Watson-Siriboe A, Knight J. Toward Understanding the Mechanism of Calcium-Inhibited Membrane Binding of the SLP-2 C2A Domain Biophysical Journal. 114: 276a-277a. DOI: 10.1016/J.Bpj.2017.11.1594  0.799
2018 Tran H, Anderson L, Knight J. Cooperativity in Membrane Binding By C2AB Tandem Domains of Synaptotagmin-7 and Synaptotagmin-1: A Comparative Study Biophysical Journal. 114: 276a. DOI: 10.1016/J.Bpj.2017.11.1593  0.805
2018 Watson-Siriboe A, Alnaas A, Henderson J, Tran S, Osterberg JR, Lee Chon N, Lyakhova T, Oviedo J, Lin H, Knight J. Multivalent Membrane Lipid Targeting by the Calcium-Independent C2A Domain of Slp-4/Granuphilin Biophysical Journal. 114: 275a. DOI: 10.1016/J.Bpj.2017.11.1588  0.803
2017 Hamilton DJ, Coffman MD, Knight JD, Reed SM. Lipid-Coated Gold Nanoparticles and FRET Allow Sensitive Monitoring of Liposome Clustering Mediated by the Synaptotagmin-7 C2A Domain. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 28850236 DOI: 10.1021/Acs.Langmuir.7B01397  0.806
2016 Dahl P, Vasquez J, Knight J, Anantharam A. The Synaptotagmin-7 C2AB Domain Alters Membrane Morphology in a Calcium-Dependent Manner Biophysical Journal. 110: 573a. DOI: 10.1016/J.Bpj.2015.11.3067  0.826
2016 Watson-Siriboe A, Henderson J, Osterberg JR, Giardina DT, DeLima M, Lin H, Knight J. Multivalent Membrane Lipid Targeting by the Calcium-Independent C2 Domains of Granuphilin: Evidence from Computation and Experiment Biophysical Journal. 110: 432a. DOI: 10.1016/J.Bpj.2015.11.2331  0.84
2016 DeLima M, Giardina DT, Knight J. Contribution of Low-Affinity Sites to Strong Multivalent Protein-Membrane Binding: Detection using Single-Molecule TIRF Microscopy Biophysical Journal. 110: 255a. DOI: 10.1016/J.Bpj.2015.11.1402  0.847
2016 Tran HT, Giardina DT, Chantranuvatana K, Coffman MD, Vasquez JK, Knight J. Differences in Membrane Binding Cooperativity between the Tandem C2 Domains of Synaptotagmin 1 and Synaptotagmin 7 Biophysical Journal. 110: 253a. DOI: 10.1016/J.Bpj.2015.11.1393  0.825
2016 Maynard FA, Salazar B, Knight JD. Mechanism of Strong Membrane Binding by Synaptotagmin 7 C2A Domain: Insight from Mutation and Lipid Composition Dependence Biophysical Journal. 110: 253a. DOI: 10.1016/J.Bpj.2015.11.1390  0.838
2015 Chon NL, Osterberg JR, Henderson J, Khan HM, Reuter N, Knight JD, Lin H. Membrane Docking of the Synaptotagmin 7 C2A Domain: Computation Reveals Interplay between Electrostatic and Hydrophobic Contributions. Biochemistry. 54: 5696-711. PMID 26333120 DOI: 10.1021/Acs.Biochem.5B00422  0.828
2015 Osterberg JR, Chon NL, Boo A, Maynard FA, Lin H, Knight JD. Membrane Docking of the Synaptotagmin 7 C2A Domain: Electron Paramagnetic Resonance Measurements Show Contributions from Two Membrane Binding Loops. Biochemistry. 54: 5684-95. PMID 26322740 DOI: 10.1021/Acs.Biochem.5B00421  0.802
2015 Lant B, Yu B, Goudreault M, Holmyard D, Knight JD, Xu P, Zhao L, Chin K, Wallace E, Zhen M, Gingras AC, Derry WB. CCM-3/STRIPAK promotes seamless tube extension through endocytic recycling. Nature Communications. 6: 6449. PMID 25743393 DOI: 10.1038/Ncomms7449  0.435
2015 Watson-Siriboe A, Lyakhova TA, Knight JD. Granuphilin C2A Domain as a Coincidence Detector for Phosphatidylserine and Phosphoinositides Biophysical Journal. 108: 103a-104a. DOI: 10.1016/J.Bpj.2014.11.590  0.829
2015 Vasquez J, Chantranuvatana K, Giardina D, Knight J. Single-Molecule Diffusion Measurements Indicate Independent Membrane Insertion by the Tandem C2 Domains of Synaptotagmin 7 Biophysical Journal. 108: 559a-560a. DOI: 10.1016/J.Bpj.2014.11.3067  0.831
2015 Chon NL, Henderson J, Ryan Osterberg J, Khan H, Reuter N, Knight J, Lin H. Membrane Association of Synaptotagmin 7 C2A Domain by Molecular Dynamics Simulations Biophysical Journal. 108: 248a. DOI: 10.1016/J.Bpj.2014.11.1373  0.805
2014 Vasquez JK, Chantranuvatana K, Giardina DT, Coffman MD, Knight JD. Lateral diffusion of proteins on supported lipid bilayers: additive friction of synaptotagmin 7 C2A-C2B tandem domains. Biochemistry. 53: 7904-13. PMID 25437758 DOI: 10.1021/Bi5012223  0.815
2014 Ziemba BP, Li J, Landgraf KE, Knight JD, Voth GA, Falke JJ. Single-molecule studies reveal a hidden key step in the activation mechanism of membrane-bound protein kinase C-α. Biochemistry. 53: 1697-713. PMID 24559055 DOI: 10.1021/Bi4016082  0.846
2014 Lyakhova TA, Knight JD. The C2 domains of granuphilin are high-affinity sensors for plasma membrane lipids. Chemistry and Physics of Lipids. 182: 29-37. PMID 24184645 DOI: 10.1016/J.Chemphyslip.2013.10.009  0.832
2014 Vasquez JK, Chantranuvatana K, Knight J. Frictional Additivity of Lateral Diffusion on Supported Bilayers: Influence of Linker Length in Synaptotagmin 7 C2A-C2B Tandem Domains Biophysical Journal. 106: 311a-312a. DOI: 10.1016/J.Bpj.2013.11.1804  0.821
2014 Lyakhova TA, Knight J. Molecular Mechanisms of High-Affinity Phosphoinositide Binding by the Tandem C2 Domains of Granuphilin/Slp-4 Biophysical Journal. 106: 247a. DOI: 10.1016/J.Bpj.2013.11.1450  0.834
2013 Yamamoto TM, Cook JM, Kotter CV, Khat T, Silva KD, Ferreyros M, Holt JW, Knight JD, Charlesworth A. Zar1 represses translation in Xenopus oocytes and binds to the TCS in maternal mRNAs with different characteristics than Zar2. Biochimica Et Biophysica Acta. 1829: 1034-46. PMID 23827238 DOI: 10.1016/J.Bbagrm.2013.06.001  0.679
2013 Brandt DS, Coffman MD, Falke JJ, Knight JD. Correction to Hydrophobic Contributions to the Membrane Docking of Synaptotagmin 7 C2A Domain: Mechanistic Contrast between Isoforms 1 and 7 Biochemistry. 52: 1649-1649. DOI: 10.1021/Bi400134J  0.845
2013 Salazar B, Brandt DS, Coffman MD, Osterberg JR, Chantranuvatana K, Falke JJ, Knight J. Probing the Structural Origins of Unusually Strong Target Membrane Affinity of Synaptotagmin 7 C2A and C2Ab Domains Biophysical Journal. 104: 537a. DOI: 10.1016/J.Bpj.2012.11.2972  0.86
2012 Brandt DS, Coffman MD, Falke JJ, Knight JD. Hydrophobic contributions to the membrane docking of synaptotagmin 7 C2A domain: mechanistic contrast between isoforms 1 and 7. Biochemistry. 51: 7654-64. PMID 22966849 DOI: 10.1021/Bi3007115  0.835
2012 Ziemba BP, Knight JD, Falke JJ. Assembly of membrane-bound protein complexes: detection and analysis by single molecule diffusion. Biochemistry. 51: 1638-47. PMID 22263647 DOI: 10.1021/Bi201743A  0.826
2012 Ziemba BP, Knight JD, Falke JJ. Analysis of Protein Complex Formation on Membrane Surfaces by Single Molecule Diffusion Biophysical Journal. 102: 183a. DOI: 10.1016/J.Bpj.2011.11.994  0.823
2012 Liakhova T, Knight J. Molecular Interactions and Membrane Targeting of Granuphilin C2 Domains: A Preliminary Study Biophysical Journal. 102: 78a. DOI: 10.1016/J.Bpj.2011.11.453  0.828
2012 Brandt DS, Coffman M, Falke JJ, Knight J. Synaptotagmin C2 Domain Membrane Targeting: Kinetic and Mechanistic Diversity Among Isoforms from Different Cell Types Biophysical Journal. 102: 433a. DOI: 10.1016/J.Bpj.2011.11.2372  0.868
2011 Chase AR, Knight JD, Falke JJ. Protein-Lipid Interactions Shaping the Electrostatic Membrane Search of a Pleckstrin Homology Domain Biophysical Journal. 100: 525a. DOI: 10.1016/J.Bpj.2010.12.3070  0.839
2010 Knight JD, Lerner MG, Marcano-Velázquez JG, Pastor RW, Falke JJ. Single molecule diffusion of membrane-bound proteins: window into lipid contacts and bilayer dynamics. Biophysical Journal. 99: 2879-87. PMID 21044585 DOI: 10.1016/J.Bpj.2010.08.046  0.825
2010 Knight J, Falke JJ. Membrane Diffusion of PH Domain-PIP3 Complexes: the Effects of Target Lipid Stoichiometry on Diffusion Constant Probed Using Single-Molecule Fluorescence Microscopy Biophysical Journal. 98: 86a. DOI: 10.1016/J.Bpj.2009.12.489  0.821
2009 Knight JD, Falke JJ. Single-molecule fluorescence studies of a PH domain: new insights into the membrane docking reaction. Biophysical Journal. 96: 566-82. PMID 19167305 DOI: 10.1016/J.Bpj.2008.10.020  0.846
2009 Knight J, Falke JJ. Single Molecule Fluorescence Studies of Membrane Targeting Proteins: Lateral Diffusion in Supported Bilayers Reveals Additional Lipid Binding Sites Biophysical Journal. 96: 207a. DOI: 10.1016/J.Bpj.2008.12.1842  0.844
2008 Knight JD, Williamson JA, Miranker AD. Interaction of membrane-bound islet amyloid polypeptide with soluble and crystalline insulin. Protein Science : a Publication of the Protein Society. 17: 1850-6. PMID 18765820 DOI: 10.1110/Ps.036350.108  0.782
2006 Knight JD, Hebda JA, Miranker AD. Conserved and cooperative assembly of membrane-bound alpha-helical states of islet amyloid polypeptide. Biochemistry. 45: 9496-508. PMID 16878984 DOI: 10.1021/Bi060579Z  0.798
2004 Knight JD, Miranker AD. Phospholipid catalysis of diabetic amyloid assembly. Journal of Molecular Biology. 341: 1175-87. PMID 15321714 DOI: 10.1016/J.Jmb.2004.06.086  0.837
2003 Knight JD, Adami RC. Stabilization of DNA utilizing divalent cations and alcohol. International Journal of Pharmaceutics. 264: 15-24. PMID 12972332 DOI: 10.1016/S0378-5173(03)00367-3  0.618
2002 Eakin CM, Knight JD, Morgan CJ, Gelfand MA, Miranker AD. Formation of a copper specific binding site in non-native states of beta-2-microglobulin. Biochemistry. 41: 10646-56. PMID 12186550 DOI: 10.1021/Bi025944A  0.756
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