Liping Wei, Ph.D. - Publications

Affiliations: 
Stanford University, Palo Alto, CA 

69 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Wen Y, Wang J, Zhang Q, Yang X, Wei L, Bao X. MECP2 germline mosaicism plays an important part in the inheritance of Rett syndrome: a study of MECP2 germline mosaicism in males. Bmc Medicine. 21: 155. PMID 37081442 DOI: 10.1186/s12916-023-02846-2  0.58
2023 Yang X, Xu X, Breuss MW, Antaki D, Ball LL, Chung C, Shen J, Li C, George RD, Wang Y, Bae T, Cheng Y, Abyzov A, Wei L, Alexandrov LB, et al. Control-independent mosaic single nucleotide variant detection with DeepMosaic. Nature Biotechnology. PMID 36593400 DOI: 10.1038/s41587-022-01559-w  0.676
2022 Zhang J, Li Z, Wu Y, Ye AY, Chen L, Yang X, Wu Q, Wei L. RJAfinder: An automated tool for quantification of responding to joint attention behaviors in autism spectrum disorder using eye tracking data. Frontiers in Neuroscience. 16: 915464. PMID 36466175 DOI: 10.3389/fnins.2022.915464  0.754
2020 Yang X, Yang C, Zheng X, Xiong L, Tao Y, Wang M, Yongxin Ye A, Wu Q, Dou Y, Luo J, Wei L, Yue Huang A. MosaicBase: A Knowledgebase of Postzygotic Mosaic Variants in Noncancer Disease-related and Healthy Human Individuals. Genomics, Proteomics & Bioinformatics. PMID 32911083 DOI: 10.1016/J.Gpb.2020.05.002  0.799
2020 Wei L, Zhao C, Dong S, Yao S, Ji B, Zhao B, Liu Z, Liu X, Wang Y. Secoisolariciresinol diglucoside alleviates hepatic lipid metabolic misalignment involving the endoplasmic reticulum-mitochondrial axis. Food & Function. PMID 32426795 DOI: 10.1039/D0Fo00124D  0.529
2019 Clark WT, Kasak L, Bakolitsa C, Hu Z, Andreoletti G, Babbi G, Bromberg Y, Casadio R, Dunbrack R, Folkman L, Ford CT, Jones D, Katsonis P, Kundu K, Lichtarge O, ... ... Wei L, et al. Assessment of predicted enzymatic activity of alpha-N-acetylglucosaminidase (NAGLU) variants of unknown significance for CAGI 2016. Human Mutation. PMID 31342580 DOI: 10.1002/Humu.23875  0.423
2019 Zhao B, Wu Q, Ye AY, Guo J, Zheng X, Yang X, Yan L, Liu QR, Hyde TM, Wei L, Huang AY. Somatic LINE-1 retrotransposition in cortical neurons and non-brain tissues of Rett patients and healthy individuals. Plos Genetics. 15: e1008043. PMID 30973874 DOI: 10.1371/Journal.Pgen.1008043  0.779
2019 Yang X, Yang X, Chen J, Li S, Zeng Q, Huang AY, Ye AY, Yu Z, Wang S, Jiang Y, Wu X, Wu Q, Wei L, Zhang Y. ATP1A3 mosaicism in families with alternating hemiplegia of childhood. Clinical Genetics. PMID 30891744 DOI: 10.1111/Cge.13539  0.795
2019 Zhang Q, Yang X, Wang J, Li J, Wu Q, Wen Y, Zhao Y, Zhang X, Yao H, Wu X, Yu S, Wei L, Bao X. Correction: Genomic mosaicism in the pathogenesis and inheritance of a Rett syndrome cohort. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 30783265 DOI: 10.1038/S41436-019-0461-X  0.672
2019 Zhou WZ, Zhang J, Li Z, Lin X, Li J, Wang S, Yang C, Wu Q, Ye AY, Wang M, Wang D, Pu TZ, Wu YY, Wei L. Targeted resequencing of 358 candidate genes for autism spectrum disorder in a Chinese cohort reveals diagnostic potential and genotype-phenotype correlations. Human Mutation. PMID 30763456 DOI: 10.1002/Humu.23724  0.797
2018 Zhang Q, Yang X, Wang J, Li J, Wu Q, Wen Y, Zhao Y, Zhang X, Yao H, Wu X, Yu S, Wei L, Bao X. Genomic mosaicism in the pathogenesis and inheritance of a Rett syndrome cohort. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 30405208 DOI: 10.1038/S41436-018-0348-2  0.709
2018 Yang C, Li J, Wu Q, Yang X, Huang AY, Zhang J, Ye AY, Dou Y, Yan L, Zhou WZ, Kong L, Wang M, Ai C, Yang D, Wei L. AutismKB 2.0: a knowledgebase for the genetic evidence of autism spectrum disorder. Database : the Journal of Biological Databases and Curation. 2018. PMID 30339214 DOI: 10.1093/Database/Bay106  0.774
2018 Liu A, Yang X, Yang X, Wu Q, Zhang J, Sun D, Yang Z, Jiang Y, Wu X, Wei L, Zhang Y. Mosaicism and incomplete penetrance of mutations. Journal of Medical Genetics. PMID 30287595 DOI: 10.1136/Jmedgenet-2017-105235  0.635
2018 Ye AY, Dou Y, Yang X, Wang S, Huang AY, Wei L. A model for postzygotic mosaicisms quantifies the allele fraction drift, mutation rate, and contribution to de novo mutations. Genome Research. PMID 29875290 DOI: 10.1101/Gr.230003.117  0.787
2018 Huang AY, Yang X, Wang S, Zheng X, Wu Q, Ye AY, Wei L. Distinctive types of postzygotic single-nucleotide mosaicisms in healthy individuals revealed by genome-wide profiling of multiple organs. Plos Genetics. 14: e1007395. PMID 29763432 DOI: 10.1371/Journal.Pgen.1007395  0.794
2018 Wang M, Tai C, E W, Wei L. DeFine: deep convolutional neural networks accurately quantify intensities of transcription factor-DNA binding and facilitate evaluation of functional non-coding variants. Nucleic Acids Research. PMID 29617928 DOI: 10.1093/Nar/Gky215  0.399
2017 Zeng Q, Yang X, Zhang J, Liu A, Yang Z, Liu X, Wu Y, Wu X, Wei L, Zhang Y. Genetic analysis of benign familial epilepsies in the first year of life in a Chinese cohort. Journal of Human Genetics. PMID 29215089 DOI: 10.1038/S10038-017-0359-X  0.391
2017 Yang X, Liu A, Xu X, Yang X, Zeng Q, Ye AY, Yu Z, Wang S, Huang AY, Wu X, Wu Q, Wei L, Zhang Y. Genomic mosaicism in paternal sperm and multiple parental tissues in a Dravet syndrome cohort. Scientific Reports. 7: 15677. PMID 29142202 DOI: 10.1038/S41598-017-15814-7  0.796
2017 Wang J, Gao H, Bao X, Zhang Q, Li J, Wei L, Wu X, Chen Y, Yu S. SCN8A mutations in Chinese patients with early onset epileptic encephalopathy and benign infantile seizures. Bmc Medical Genetics. 18: 104. PMID 28923014 DOI: 10.1186/S12881-017-0460-1  0.639
2017 Zhang Q, Wang J, Li J, Bao X, Zhao Y, Zhang X, Wei L, Wu X. Novel FOXG1 mutations in Chinese patients with Rett syndrome or Rett-like mental retardation. Bmc Medical Genetics. 18: 96. PMID 28851325 DOI: 10.1186/S12881-017-0455-Y  0.539
2017 Dou Y, Yang X, Li Z, Wang S, Zhang Z, Ye AY, Yan L, Yang C, Wu Q, Li J, Zhao B, Huang AY, Wei L. Post-zygotic single-nucleotide mosaicisms contribute to the etiology of autism spectrum disorder and autistic traits and the origin of mutations. Human Mutation. PMID 28503910 DOI: 10.1002/Humu.23255  0.783
2017 Zhang Q, Zhao Y, Bao X, Luo J, Zhang X, Li J, Wei L, Wu X. Familial cases and male cases with MECP2 mutations. American Journal of Medical Genetics. Part B, Neuropsychiatric Genetics : the Official Publication of the International Society of Psychiatric Genetics. PMID 28394482 DOI: 10.1002/Ajmg.B.32534  0.556
2017 Huang AY, Zhang Z, Ye AY, Dou Y, Yan L, Yang X, Zhang Y, Wei L. MosaicHunter: accurate detection of postzygotic single-nucleotide mosaicism through next-generation sequencing of unpaired, trio, and paired samples. Nucleic Acids Research. PMID 28132024 DOI: 10.1093/Nar/Gkx024  0.791
2016 Zhang Q, Li J, Zhao Y, Bao X, Wei L, Wang J. Gene mutation analysis of 175 Chinese patients with early-onset epileptic encephalopathy. Clinical Genetics. PMID 27779742 DOI: 10.1111/Cge.12901  0.402
2016 Liu A, Xu X, Yang X, Jiang Y, Yang Z, Liu X, Wu Y, Wu X, Wei L, Zhang Y. The Clinical Spectrum of Female Epilepsy Patients with PCDH19 Mutations in a Chinese Population. Clinical Genetics. PMID 27527380 DOI: 10.1111/Cge.12846  0.34
2016 Wang M, Wei L. iFish: predicting the pathogenicity of human nonsynonymous variants using gene-specific/family-specific attributes and classifiers. Scientific Reports. 6: 31321. PMID 27527004 DOI: 10.1038/Srep31321  0.44
2016 Hou T, Jian C, Xu J, Huang AY, Xi J, Hu K, Wei L, Cheng H, Wang X. Identification of EFHD1 as a novel Ca(2+) sensor for mitoflash activation. Cell Calcium. PMID 26975899 DOI: 10.1016/J.Ceca.2016.03.002  0.543
2015 Yang X, Zhang Y, Yuan D, Xu X, Li S, Wei L, Wu Y, Xiong H, Liu X, Bao X, Jiang Y, Wu X. [ATP1A3 gene mutations in patients with alternating hemiplegia of childhood]. Zhonghua Er Ke Za Zhi. Chinese Journal of Pediatrics. 53: 835-9. PMID 26758322 DOI: 10.3760/Cma.J.Issn.0578-1310.2015.11.007  0.381
2015 Xu X, Yang X, Wu Q, Liu A, Yang X, Ye AY, Huang AY, Li J, Wang M, Yu Z, Wang S, Zhang Z, Wu X, Wei L, Zhang Y. Amplicon Resequencing Identified Parental Mosaicism for Approximately 10% of "de novo" SCN1A Mutations in Children with Dravet Syndrome. Human Mutation. PMID 26096185 DOI: 10.1002/Humu.22819  0.793
2015 Zhao HQ, Zhang P, Gao H, He X, Dou Y, Huang AY, Liu XM, Ye AY, Dong MQ, Wei L. Profiling the RNA editomes of wild-type C. elegans and ADAR mutants. Genome Research. 25: 66-75. PMID 25373143 DOI: 10.1101/Gr.176107.114  0.745
2014 Zhou WZ, Ye AY, Sun ZK, Tian HH, Pu TZ, Wu YY, Wang DD, Zhao MZ, Lu SJ, Yang CH, Wei L. Statistical analysis of twenty years (1993 to 2012) of data from mainland China's first intervention center for children with autism spectrum disorder. Molecular Autism. 5: 52. PMID 25694804 DOI: 10.1186/2040-2392-5-52  0.699
2014 Ding Y, Wang M, He Y, Ye AY, Yang X, Liu F, Meng Y, Gao G, Wei L. "Bioinformatics: introduction and methods," a bilingual Massive Open Online Course (MOOC) as a new example for global bioinformatics education. Plos Computational Biology. 10: e1003955. PMID 25503717 DOI: 10.1371/Journal.Pcbi.1003955  0.743
2014 Iossifov I, O'Roak BJ, Sanders SJ, Ronemus M, Krumm N, Levy D, Stessman HA, Witherspoon KT, Vives L, Patterson KE, Smith JD, Paeper B, Nickerson DA, Dea J, Dong S, ... ... Wei L, et al. The contribution of de novo coding mutations to autism spectrum disorder. Nature. 515: 216-21. PMID 25363768 DOI: 10.1038/Nature13908  0.807
2014 Huang AY, Xu X, Ye AY, Wu Q, Yan L, Zhao B, Yang X, He Y, Wang S, Zhang Z, Gu B, Zhao HQ, Wang M, Gao H, Gao G, ... ... Wei L, et al. Postzygotic single-nucleotide mosaicisms in whole-genome sequences of clinically unremarkable individuals. Cell Research. 24: 1311-27. PMID 25312340 DOI: 10.1038/Cr.2014.131  0.797
2014 Dong S, Walker MF, Carriero NJ, DiCola M, Willsey AJ, Ye AY, Waqar Z, Gonzalez LE, Overton JD, Frahm S, Keaney JF, Teran NA, Dea J, Mandell JD, Hus Bal V, ... ... Wei L, et al. De novo insertions and deletions of predominantly paternal origin are associated with autism spectrum disorder. Cell Reports. 9: 16-23. PMID 25284784 DOI: 10.1016/J.Celrep.2014.08.068  0.81
2014 Yang X, Gao H, Zhang J, Xu X, Liu X, Wu X, Wei L, Zhang Y. ATP1A3 mutations and genotype-phenotype correlation of alternating hemiplegia of childhood in Chinese patients. Plos One. 9: e97274. PMID 24842602 DOI: 10.1371/Journal.Pone.0097274  0.655
2014 Zhao Y, Zhang X, Bao X, Zhang Q, Zhang J, Cao G, Zhang J, Li J, Wei L, Pan H, Wu X. Clinical features and gene mutational spectrum of CDKL5-related diseases in a cohort of Chinese patients. Bmc Medical Genetics. 15: 24. PMID 24564546 DOI: 10.1186/1471-2350-15-24  0.592
2014 Gao G, Vibranovski MD, Zhang L, Li Z, Liu M, Zhang YE, Li X, Zhang W, Fan Q, VanKuren NW, Long M, Wei L. A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster. Genome Research. 24: 629-38. PMID 24407956 DOI: 10.1101/Gr.165837.113  0.325
2013 Willsey AJ, Sanders SJ, Li M, Dong S, Tebbenkamp AT, Muhle RA, Reilly SK, Lin L, Fertuzinhos S, Miller JA, Murtha MT, Bichsel C, Niu W, Cotney J, Ercan-Sencicek AG, ... ... Wei L, et al. Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism. Cell. 155: 997-1007. PMID 24267886 DOI: 10.1016/J.Cell.2013.10.020  0.766
2013 Huang Y, Xie C, Ye AY, Li CY, Gao G, Wei L. Recent adaptive events in human brain revealed by meta-analysis of positively selected genes. Plos One. 8: e61280. PMID 23593450 DOI: 10.1371/Journal.Pone.0061280  0.768
2012 Xie C, Zhang YE, Chen JY, Liu CJ, Zhou WZ, Li Y, Zhang M, Zhang R, Wei L, Li CY. Hominoid-specific de novo protein-coding genes originating from long non-coding RNAs. Plos Genetics. 8: e1002942. PMID 23028352 DOI: 10.1371/Journal.Pgen.1002942  0.731
2012 Zhang X, Bao X, Zhang J, Zhao Y, Cao G, Pan H, Zhang J, Wei L, Wu X. Molecular characteristics of Chinese patients with Rett syndrome. European Journal of Medical Genetics. 55: 677-81. PMID 22982301 DOI: 10.1016/J.Ejmg.2012.08.009  0.438
2012 Xu LM, Li JR, Huang Y, Zhao M, Tang X, Wei L. AutismKB: an evidence-based knowledgebase of autism genetics. Nucleic Acids Research. 40: D1016-22. PMID 22139918 DOI: 10.1093/Nar/Gkr1145  0.597
2011 Li CY, Zhou WZ, Zhang PW, Johnson C, Wei L, Uhl GR. Meta-analysis and genome-wide interpretation of genetic susceptibility to drug addiction. Bmc Genomics. 12: 508. PMID 21999673 DOI: 10.1186/1471-2164-12-508  0.675
2011 Xie C, Mao X, Huang J, Ding Y, Wu J, Dong S, Kong L, Gao G, Li CY, Wei L. KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases. Nucleic Acids Research. 39: W316-22. PMID 21715386 DOI: 10.1093/nar/gkr483  0.77
2010 Li CY, Zhang Y, Wang Z, Zhang Y, Cao C, Zhang PW, Lu SJ, Li XM, Yu Q, Zheng X, Du Q, Uhl GR, Liu QR, Wei L. A human-specific de novo protein-coding gene associated with human brain functions. Plos Computational Biology. 6: e1000734. PMID 20376170 DOI: 10.1371/Journal.Pcbi.1000734  0.657
2009 Zhao SQ, Wang J, Zhang L, Li JT, Gu X, Gao G, Wei L. BOAT: Basic Oligonucleotide Alignment Tool. Bmc Genomics. 10: S2. PMID 19958483 DOI: 10.1186/1471-2164-10-S3-S2  0.339
2009 Zhang Y, Lu S, Zhao S, Zheng X, Long M, Wei L. Positive selection for the male functionality of a co-retroposed gene in the hominoids. Bmc Evolutionary Biology. 9: 252. PMID 19832993 DOI: 10.1186/1471-2148-9-252  0.399
2009 Li Z, Liu M, Zhang L, Zhang W, Gao G, Zhu Z, Wei L, Fan Q, Long M. Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster. Nucleic Acids Research. 37: 4308-14. PMID 19451167 DOI: 10.1093/Nar/Gkp334  0.301
2009 Li CY, Liu QR, Zhang PW, Li XM, Wei L, Uhl GR. OKCAM: an ontology-based, human-centered knowledgebase for cell adhesion molecules. Nucleic Acids Research. 37: D251-60. PMID 18790807 DOI: 10.1093/Nar/Gkn568  0.658
2008 Li CY, Mao X, Wei L. Genes and (common) pathways underlying drug addiction. Plos Computational Biology. 4: e2. PMID 18179280 DOI: 10.1371/Journal.Pcbi.0040002  0.654
2007 Li CY, Yu Q, Ye ZQ, Sun Y, He Q, Li XM, Zhang W, Luo J, Gu X, Zheng X, Wei L. A nonsynonymous SNP in human cytosolic sialidase in a small Asian population results in reduced enzyme activity: potential link with severe adverse reactions to oseltamivir. Cell Research. 17: 357-62. PMID 17426694 DOI: 10.1038/Cr.2007.27  0.623
2007 Zhang Y, Li J, Kong L, Gao G, Liu QR, Wei L. NATsDB: Natural Antisense Transcripts DataBase. Nucleic Acids Research. 35: D156-61. PMID 17082204 DOI: 10.1093/Nar/Gkl782  0.387
2007 Wu J, Shen J, Mao X, Liu K, Wei L, Liu P, Yang G. Isolation and analysis of differentially expressed genes in dominant genic male sterility (DGMS) Brassica napus L. using subtractive PCR and cDNA microarray Plant Science. 172: 204-211. DOI: 10.1016/J.Plantsci.2006.08.010  0.343
2006 Cai Z, Mao X, Li S, Wei L. Genome comparison using Gene Ontology (GO) with statistical testing. Bmc Bioinformatics. 7: 374. PMID 16901353 DOI: 10.1186/1471-2105-7-374  0.377
2006 Zhang Y, Liu XS, Liu QR, Wei L. Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species. Nucleic Acids Research. 34: 3465-75. PMID 16849434 DOI: 10.1093/Nar/Gkl473  0.369
2006 Wu J, Mao X, Cai T, Luo J, Wei L. KOBAS server: a web-based platform for automated annotation and pathway identification. Nucleic Acids Research. 34: W720-4. PMID 16845106 DOI: 10.1093/Nar/Gkl167  0.344
2006 Ji X, Li W, Song J, Wei L, Liu XS. CEAS: cis-regulatory element annotation system. Nucleic Acids Research. 34: W551-4. PMID 16845068 DOI: 10.1093/Nar/Gkl322  0.335
2006 Gao G, Zhong Y, Guo A, Zhu Q, Tang W, Zheng W, Gu X, Wei L, Luo J. DRTF: a database of rice transcription factors. Bioinformatics (Oxford, England). 22: 1286-7. PMID 16551659 DOI: 10.1093/Bioinformatics/Btl107  0.306
2006 Li J, Li X, Guo L, Lu F, Feng X, He K, Wei L, Chen Z, Qu LJ, Gu H. A subgroup of MYB transcription factor genes undergoes highly conserved alternative splicing in Arabidopsis and rice. Journal of Experimental Botany. 57: 1263-73. PMID 16531467 DOI: 10.1093/Jxb/Erj094  0.319
2005 Wu X, Walker MG, Luo J, Wei L. GBA server: EST-based digital gene expression profiling. Nucleic Acids Research. 33: W673-6. PMID 15980560 DOI: 10.1093/Nar/Gki480  0.337
2005 Mao X, Cai T, Olyarchuk JG, Wei L. Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary. Bioinformatics (Oxford, England). 21: 3787-93. PMID 15817693 DOI: 10.1093/Bioinformatics/Bti430  0.374
2005 Li C, Mao X, Wei L. Genes and (Common) Pathways Underlying Addiction Revealed by Combining and Analyzing Candidate Gene Lists from Multiple Technology Platforms Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.0040002.Eor  0.331
2004 Liu Y, Wei L, Batzoglou S, Brutlag DL, Liu JS, Liu XS. A suite of web-based programs to search for transcriptional regulatory motifs. Nucleic Acids Research. 32: W204-7. PMID 15215381 DOI: 10.1093/Nar/Gkh461  0.303
2004 Liu Y, Liu XS, Wei L, Altman RB, Batzoglou S. Eukaryotic regulatory element conservation analysis and identification using comparative genomics. Genome Research. 14: 451-8. PMID 14993210 DOI: 10.1101/Gr.1327604  0.507
2003 Wei L, Altman RB. Recognizing complex, asymmetric functional sites in protein structures using a Bayesian scoring function. Journal of Bioinformatics and Computational Biology. 1: 119-38. PMID 15290784  0.345
2003 Shon J, Park JY, Wei L. Beyond similarity-based methods to associate genes for the inference of function Biosilico. 1: 89-96. DOI: 10.1016/S1478-5382(03)02318-7  0.358
2002 Wei L, Liu Y, Dubchak I, Shon J, Park J. Comparative genomics approaches to study organism similarities and differences. Journal of Biomedical Informatics. 35: 142-50. PMID 12474427 DOI: 10.1016/S1532-0464(02)00506-3  0.365
2001 Waugh A, Williams GA, Wei L, Altman RB. Using meta computing tools to facilitate large-scale analyses of biological databases. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 360-71. PMID 11262955 DOI: 10.1142/9789814447362_0035  0.361
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