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Jeffrey M. Skerker, Ph.D. - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
cell cycle progression and cell differentiation
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Sander K, Abel AJ, Friedline S, Sharpless W, Skerker J, Deutschbauer A, Clark DS, Arkin AP. Eliminating genes for a two-component system increases PHB productivity in Cupriavidus basilensis 4G11 under PHB suppressing, nonstress conditions. Biotechnology and Bioengineering. PMID 37638652 DOI: 10.1002/bit.28532  0.317
2019 Nora LC, Wehrs M, Kim J, Cheng JF, Tarver A, Simmons BA, Magnuson J, Harmon-Smith M, Silva-Rocha R, Gladden JM, Mukhopadhyay A, Skerker JM, Kirby J. A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides. Microbial Cell Factories. 18: 117. PMID 31255171 DOI: 10.1186/S12934-019-1167-0  0.328
2019 Zhuang X, Kilian O, Monroe E, Ito M, Tran-Gymfi MB, Liu F, Davis RW, Mirsiaghi M, Sundstrom E, Pray T, Skerker JM, George A, Gladden JM. Monoterpene production by the carotenogenic yeast Rhodosporidium toruloides. Microbial Cell Factories. 18: 54. PMID 30885220 DOI: 10.1186/S12934-019-1099-8  0.307
2019 Sanchez MR, Payen C, Cheong F, Hovde BT, Bissonnette S, Arkin AP, Skerker JM, Brem RB, Caudy AA, Dunham MJ. Transposon insertional mutagenesis in reveals trans-acting effects influencing species-dependent essential genes. Genome Research. PMID 30635343 DOI: 10.1101/Gr.232330.117  0.371
2018 Weiss CV, Roop JI, Hackley RK, Chuong JN, Grigoriev IV, Arkin AP, Skerker JM, Brem RB. Genetic dissection of interspecific differences in yeast thermotolerance. Nature Genetics. PMID 30297967 DOI: 10.1038/S41588-018-0243-4  0.324
2018 Cernak P, Estrela R, Poddar S, Skerker JM, Cheng YF, Carlson AK, Chen B, Glynn VM, Furlan M, Ryan OW, Donnelly MK, Arkin AP, Taylor JW, Cate JHD. Engineering Kluyveromyces marxianus as a Robust Synthetic Biology Platform Host. Mbio. 9. PMID 30254120 DOI: 10.1128/Mbio.01410-18  0.329
2018 Coradetti ST, Pinel D, Geiselman G, Ito M, Mondo S, Reilly MC, Cheng YF, Bauer S, Grigoriev I, Gladden JM, Simmons BA, Brem R, Arkin AP, Skerker JM. Functional genomics of lipid metabolism in the oleaginous yeast. Elife. 7. PMID 29521624 DOI: 10.7554/Elife.32110  0.379
2016 Maurer MJ, Sutardja L, Pinel D, Bauer S, Muehlbauer AL, Ames TD, Skerker JM, Arkin AP. QTL-guided metabolic engineering of a complex trait. Acs Synthetic Biology. PMID 27936603 DOI: 10.1021/Acssynbio.6B00264  0.32
2016 Quarterman J, Skerker JM, Feng X, Liu IY, Zhao H, Arkin AP, Jin YS. Rapid and efficient galactose fermentation by engineered Saccharomyces cerevisiae. Journal of Biotechnology. PMID 27140870 DOI: 10.1016/J.Jbiotec.2016.04.041  0.351
2016 Oh EJ, Skerker JM, Kim SR, Wei N, Turner TL, Maurer MJ, Arkin AP, Jin YS. Gene amplification on demand accelerates cellobiose utilization in engineered Saccharomyces cerevisiae. Applied and Environmental Microbiology. PMID 27084006 DOI: 10.1128/Aem.00410-16  0.359
2014 Ryan OW, Skerker JM, Maurer MJ, Li X, Tsai JC, Poddar S, Lee ME, DeLoache W, Dueber JE, Arkin AP, Cate JH. Selection of chromosomal DNA libraries using a multiplex CRISPR system. Elife. 3. PMID 25139909 DOI: 10.7554/Elife.03703  0.365
2014 Deutschbauer A, Price MN, Wetmore KM, Tarjan DR, Xu Z, Shao W, Leon D, Arkin AP, Skerker JM. Towards an informative mutant phenotype for every bacterial gene. Journal of Bacteriology. 196: 3643-55. PMID 25112473 DOI: 10.1128/Jb.01836-14  0.336
2013 Skerker JM, Leon D, Price MN, Mar JS, Tarjan DR, Wetmore KM, Deutschbauer AM, Baumohl JK, Bauer S, Ibáñez AB, Mitchell VD, Wu CH, Hu P, Hazen T, Arkin AP. Dissecting a complex chemical stress: chemogenomic profiling of plant hydrolysates. Molecular Systems Biology. 9: 674. PMID 23774757 DOI: 10.1038/Msb.2013.30  0.342
2013 Price MN, Deutschbauer AM, Skerker JM, Wetmore KM, Ruths T, Mar JS, Kuehl JV, Shao W, Arkin AP. Indirect and suboptimal control of gene expression is widespread in bacteria. Molecular Systems Biology. 9: 660. PMID 23591776 DOI: 10.1038/Msb.2013.16  0.35
2013 Kim SR, Skerker JM, Kang W, Lesmana A, Wei N, Arkin AP, Jin YS. Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae. Plos One. 8: e57048. PMID 23468911 DOI: 10.1371/Journal.Pone.0057048  0.328
2012 Capra EJ, Perchuk BS, Ashenberg O, Seid CA, Snow HR, Skerker JM, Laub MT. Spatial tethering of kinases to their substrates relaxes evolutionary constraints on specificity Molecular Microbiology. 86: 1393-1403. PMID 23078131 DOI: 10.1111/Mmi.12064  0.64
2012 Capra EJ, Perchuk BS, Skerker JM, Laub MT. Adaptive mutations that prevent crosstalk enable the expansion of paralogous signaling protein families Cell. 150: 222-232. PMID 22770222 DOI: 10.1016/J.Cell.2012.05.033  0.607
2010 Capra EJ, Perchuk BS, Lubin EA, Ashenberg O, Skerker JM, Laub MT. Systematic dissection and trajectory-scanning mutagenesis of the molecular interface that ensures specificity of two-component signaling pathways. Plos Genetics. 6: e1001220. PMID 21124821 DOI: 10.1371/Journal.Pgen.1001220  0.671
2010 Capra EJ, Perchuk BS, Lubin EA, Ashenberg O, Skerker JM, Laub MT. Systematic dissection and trajectory-scanning mutagenesis of the molecular interface that ensures specificity of two-component signaling pathways Plos Genetics. 6. DOI: 10.1371/journal.pgen.1001220  0.58
2008 Skerker JM, Perchuk BS, Siryaporn A, Lubin EA, Ashenberg O, Goulian M, Laub MT. Rewiring the Specificity of Two-Component Signal Transduction Systems Cell. 133: 1043-1054. PMID 18555780 DOI: 10.1016/J.Cell.2008.04.040  0.666
2007 Laub MT, Biondi EG, Skerker JM. Phosphotransfer Profiling: Systematic Mapping of Two-Component Signal Transduction Pathways and Phosphorelays Methods in Enzymology. 423: 531-548. PMID 17609150 DOI: 10.1016/S0076-6879(07)23026-5  0.714
2006 Biondi EG, Reisinger SJ, Skerker JM, Arif M, Perchuk BS, Ryan KR, Laub MT. Regulation of the bacterial cell cycle by an integrated genetic circuit Nature. 444: 899-904. PMID 17136100 DOI: 10.1038/Nature05321  0.643
2006 Biondi EG, Skerker JM, Arif M, Prasol MS, Perchuk BS, Laub MT. A phosphorelay system controls stalk biogenesis during cell cycle progression in Caulobacter crescentus. Molecular Microbiology. 59: 386-401. PMID 16390437 DOI: 10.1111/J.1365-2958.2005.04970.X  0.705
2005 Skerker JM, Prasol MS, Perchuk BS, Biondi EG, Laub MT. Two-component signal transduction pathways regulating growth and cell cycle progression in a bacterium: a system-level analysis. Plos Biology. 3: e334. PMID 16176121 DOI: 10.1371/Journal.Pbio.0030334  0.732
2004 Skerker JM, Laub MT. Cell-cycle progression and the generation of asymmetry in Caulobacter crescentus Nature Reviews Microbiology. 2: 325-337. PMID 15031731 DOI: 10.1038/Nrmicro864  0.589
2000 Skerker JM, Shapiro L. Identification and cell cycle control of a novel pilus system in Caulobacter crescentus. The Embo Journal. 19: 3223-34. PMID 10880436 DOI: 10.1093/Emboj/19.13.3223  0.546
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