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Jeremy A Lynch, Ph.D. - Publications

Affiliations: 
New York University, New York, NY, United States 
 University of Illinois at Chicago, Chicago, IL, United States 
Area:
eye development
Website:
https://bios.uic.edu/profiles/lynch-jeremy/
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47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Arsala D, Wu X, Yi SV, Lynch JA. Dnmt1a is essential for gene body methylation and the regulation of the zygotic genome in a wasp. Plos Genetics. 18: e1010181. PMID 35522715 DOI: 10.1371/journal.pgen.1010181  0.783
2022 Pers D, Buchta T, Özüak O, Roth S, Lynch JA. Expression and Function of Toll Pathway Components in the Early Development of the Wasp . Journal of Developmental Biology. 10. PMID 35225961 DOI: 10.3390/jdb10010007  0.778
2022 Kemph A, Lynch JA. Evolution of germ plasm assembly and function among the insects. Current Opinion in Insect Science. 100883. PMID 35123121 DOI: 10.1016/j.cois.2022.100883  0.337
2021 Cohen LB, Jewell R, Moody D, Arsala D, Werren JH, Lynch JA. Genetic, morphometric, and molecular analyses of interspecies differences in head shape and hybrid developmental defects in the wasp genus Nasonia. G3 (Bethesda, Md.). PMID 34580730 DOI: 10.1093/g3journal/jkab313  0.781
2021 Pechmann M, Kenny NJ, Pott L, Heger P, Chen YT, Buchta T, Özüak O, Lynch JA, Roth S. Striking parallels between dorsoventral patterning in and reveal a complex evolutionary history behind a model gene regulatory network. Elife. 10. PMID 33783353 DOI: 10.7554/eLife.68287  0.816
2020 Wang X, Kelkar YD, Xiong X, Martinson EO, Lynch J, Zhang C, Werren JH, Wang X. Genome Report: Whole Genome Sequence and Annotation of the Parasitoid Jewel Wasp Laboratory Strain RV2X[υ]. G3 (Bethesda, Md.). PMID 32571804 DOI: 10.1534/G3.120.401200  0.311
2019 Quan H, Arsala D, Lynch JA. Transcriptomic and functional analysis of the oosome, a unique form of germ plasm in the wasp Nasonia vitripennis. Bmc Biology. 17: 78. PMID 31601213 DOI: 10.1186/S12915-019-0696-7  0.805
2019 Benton MA, Frey N, Nunes da Fonseca R, von Levetzow C, Stappert D, Hakeemi MS, Conrads KH, Pechmann M, Panfilio KA, Lynch JA, Roth S. Fog signaling has diverse roles in epithelial morphogenesis in insects. Elife. 8. PMID 31573513 DOI: 10.7554/Elife.47346  0.776
2019 Lynch JA. Evolution of maternal control of axial patterning in insects. Current Opinion in Insect Science. 31: 37-42. PMID 31109671 DOI: 10.1016/J.Cois.2018.07.011  0.397
2019 Benton MA, Frey N, Fonseca RNd, Levetzow Cv, Stappert D, Hakeemi MS, Conrads KH, Pechmann M, Panfilio KA, Lynch JA, Roth S. Author response: Fog signaling has diverse roles in epithelial morphogenesis in insects Elife. DOI: 10.7554/Elife.47346.058  0.779
2018 Pers D, Lynch JA. Ankyrin domain encoding genes from an ancient horizontal transfer are functionally integrated into Nasonia developmental gene regulatory networks. Genome Biology. 19: 148. PMID 30266092 DOI: 10.1186/S13059-018-1526-X  0.821
2017 Arsala D, Lynch JA. Ploidy has little effect on timing early embryonic events in the haplo-diploid wasp Nasonia. Genesis (New York, N.Y. : 2000). PMID 28432826 DOI: 10.1002/Dvg.23029  0.822
2016 Benton MA, Kenny NJ, Conrads KH, Roth S, Lynch JA. Deep, Staged Transcriptomic Resources for the Novel Coleopteran Models Atrachya menetriesi and Callosobruchus maculatus. Plos One. 11: e0167431. PMID 27907180 DOI: 10.1371/Journal.Pone.0167431  0.783
2016 McKenna DD, Scully ED, Pauchet Y, Hoover K, Kirsch R, Geib SM, Mitchell RF, Waterhouse RM, Ahn SJ, Arsala D, Benoit JB, Blackmon H, Bledsoe T, Bowsher JH, Busch A, ... ... Lynch JA, et al. Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface. Genome Biology. 17: 227. PMID 27832824 DOI: 10.1186/S13059-016-1088-8  0.73
2016 Pers D, Buchta T, Özüak O, Wolff S, Pietsch JM, Memon MB, Roth S, Lynch JA. Global analysis of dorsoventral patterning in the wasp Nasonia reveals extensive incorporation of novelty in a regulatory network. Bmc Biology. 14: 63. PMID 27480122 DOI: 10.1186/S12915-016-0285-Y  0.777
2016 Schmidt-Ott U, Lynch JA. Emerging developmental genetic model systems in holometabolous insects. Current Opinion in Genetics & Development. 39: 116-128. PMID 27399647 DOI: 10.1016/J.Gde.2016.06.004  0.417
2016 Quan H, Lynch JA. The evolution of insect germline specification strategies. Current Opinion in Insect Science. 13: 99-105. PMID 27088076 DOI: 10.1016/J.Cois.2016.02.013  0.647
2015 Werren JH, Cohen LB, Gadau J, Ponce R, Baudry E, Lynch JA. Dissection of the complex genetic basis of craniofacial anomalies using haploid genetics and interspecies hybrids in Nasonia wasps. Developmental Biology. PMID 26721604 DOI: 10.1016/J.Ydbio.2015.12.022  0.788
2015 Sachs L, Chen YT, Drechsler A, Lynch JA, Panfilio KA, Lässig M, Berg J, Roth S. Dynamic BMP signaling polarized by Toll patterns the dorsoventral axis in a hemimetabolous insect. Elife. 4: e05502. PMID 25962855 DOI: 10.7554/Elife.05502  0.82
2015 Lynch JA. The expanding genetic toolbox of the wasp Nasonia vitripennis and its relatives. Genetics. 199: 897-904. PMID 25855650 DOI: 10.1534/Genetics.112.147512  0.32
2015 Sachs L, Chen Y, Drechsler A, Lynch JA, Panfilio KA, Lässig M, Berg J, Roth S. Author response: Dynamic BMP signaling polarized by Toll patterns the dorsoventral axis in a hemimetabolous insect Elife. DOI: 10.7554/Elife.05502.026  0.788
2014 Lynch JA. Diversity of molecules and mechanisms in establishing insect anterior-posterior polarity. Current Opinion in Insect Science. 1: 39-44. PMID 32846728 DOI: 10.1016/J.Cois.2014.05.003  0.412
2014 Özüak O, Buchta T, Roth S, Lynch JA. Dorsoventral polarity of the Nasonia embryo primarily relies on a BMP gradient formed without input from Toll. Current Biology : Cb. 24: 2393-8. PMID 25308075 DOI: 10.1016/J.Cub.2014.08.035  0.821
2014 Özüak O, Buchta T, Roth S, Lynch JA. Ancient and diverged TGF-β signaling components in Nasonia vitripennis. Development Genes and Evolution. 224: 223-33. PMID 25304164 DOI: 10.1007/S00427-014-0481-0  0.783
2013 Buchta T, Ozüak O, Stappert D, Roth S, Lynch JA. Patterning the dorsal-ventral axis of the wasp Nasonia vitripennis. Developmental Biology. 381: 189-202. PMID 23735637 DOI: 10.1016/J.Ydbio.2013.05.026  0.785
2013 Verhulst EC, Lynch JA, Bopp D, Beukeboom LW, van de Zande L. A new component of the Nasonia sex determining cascade is maternally silenced and regulates transformer expression. Plos One. 8: e63618. PMID 23717455 DOI: 10.1371/Journal.Pone.0063618  0.342
2013 Vreede BM, Lynch JA, Roth S, Sucena E. Co-option of a coordinate system defined by the EGFr and Dpp pathways in the evolution of a morphological novelty. Evodevo. 4: 7. PMID 23448685 DOI: 10.1186/2041-9139-4-7  0.675
2012 Lynch JA, El-Sherif E, Brown SJ. Comparisons of the embryonic development of Drosophila, Nasonia, and Tribolium. Wiley Interdisciplinary Reviews. Developmental Biology. 1: 16-39. PMID 23801665 DOI: 10.1002/Wdev.3  0.476
2012 Roth S, Lynch J. Axis formation: microtubules push in the right direction. Current Biology : Cb. 22: R537-9. PMID 22790006 DOI: 10.1016/J.Cub.2012.05.038  0.535
2012 Roth S, Lynch J. Does the Bicoid gradient matter? Cell. 149: 511-2. PMID 22541424 DOI: 10.1016/J.Cell.2012.04.007  0.528
2011 Lynch JA, Ozüak O, Khila A, Abouheif E, Desplan C, Roth S. The phylogenetic origin of oskar coincided with the origin of maternally provisioned germ plasm and pole cells at the base of the Holometabola. Plos Genetics. 7: e1002029. PMID 21552321 DOI: 10.1371/Journal.Pgen.1002029  0.816
2011 Lynch JA, Roth S. The evolution of dorsal-ventral patterning mechanisms in insects. Genes & Development. 25: 107-18. PMID 21245164 DOI: 10.1101/Gad.2010711  0.663
2010 Lynch JA, Desplan C. Novel modes of localization and function of nanos in the wasp Nasonia. Development (Cambridge, England). 137: 3813-21. PMID 20929949 DOI: 10.1242/Dev.054213  0.617
2010 Rousso T, Lynch J, Yogev S, Roth S, Schejter ED, Shilo BZ. Generation of distinct signaling modes via diversification of the Egfr ligand-processing cassette. Development (Cambridge, England). 137: 3427-37. PMID 20826532 DOI: 10.1242/Jcs.081646  0.554
2010 Lynch JA, Peel AD, Drechsler A, Averof M, Roth S. EGF signaling and the origin of axial polarity among the insects. Current Biology : Cb. 20: 1042-7. PMID 20471269 DOI: 10.1016/J.Cub.2010.04.023  0.642
2010 Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, ... ... Lynch JA, et al. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science (New York, N.Y.). 327: 343-8. PMID 20075255 DOI: 10.1126/Science.1178028  0.607
2009 Roth S, Lynch JA. Symmetry breaking during Drosophila oogenesis. Cold Spring Harbor Perspectives in Biology. 1: a001891. PMID 20066085 DOI: 10.1101/Cshperspect.A001891  0.596
2009 Lynch JA, Panfilio KA, da Fonseca RN. As Tribolium matures as a model insect, Coleopteran Community Congregates in Cologne. Development Genes and Evolution. 219: 531-3. PMID 20039059 DOI: 10.1007/S00427-009-0307-7  0.688
2009 Fonseca RN, Lynch JA, Roth S. Evolution of axis formation: mRNA localization, regulatory circuits and posterior specification in non-model arthropods. Current Opinion in Genetics & Development. 19: 404-11. PMID 19493672 DOI: 10.1016/J.Gde.2009.04.009  0.656
2009 Rosenberg MI, Lynch JA, Desplan C. Heads and tails: evolution of antero-posterior patterning in insects. Biochimica Et Biophysica Acta. 1789: 333-42. PMID 18976722 DOI: 10.1016/J.Bbagrm.2008.09.007  0.639
2008 Richards S, Gibbs RA, Weinstock GM, Brown SJ, Denell R, Beeman RW, Gibbs R, Beeman RW, Brown SJ, Bucher G, Friedrich M, Grimmelikhuijzen CJ, Klingler M, Lorenzen M, ... ... Lynch JA, et al. The genome of the model beetle and pest Tribolium castaneum. Nature. 452: 949-55. PMID 18362917 DOI: 10.1038/Nature06784  0.807
2006 Lynch JA, Desplan C. A method for parental RNA interference in the wasp Nasonia vitripennis. Nature Protocols. 1: 486-94. PMID 17406271 DOI: 10.1038/Nprot.2006.70  0.555
2006 Lynch JA, Olesnicky EC, Desplan C. Regulation and function of tailless in the long germ wasp Nasonia vitripennis. Development Genes and Evolution. 216: 493-8. PMID 16670873 DOI: 10.1007/S00427-006-0076-5  0.825
2006 Lynch JA, Brent AE, Leaf DS, Pultz MA, Desplan C. Localized maternal orthodenticle patterns anterior and posterior in the long germ wasp Nasonia. Nature. 439: 728-32. PMID 16467838 DOI: 10.1038/Nature04445  0.634
2005 Pultz MA, Westendorf L, Gale SD, Hawkins K, Lynch J, Pitt JN, Reeves NL, Yao JC, Small S, Desplan C, Leaf DS. A major role for zygotic hunchback in patterning the Nasonia embryo. Development (Cambridge, England). 132: 3705-15. PMID 16077090 DOI: 10.1242/Dev.01939  0.652
2003 Lynch J, Desplan C. 'De-evolution' of Drosophila toward a more generic mode of axis patterning. The International Journal of Developmental Biology. 47: 497-503. PMID 14756325 DOI: 10.1387/Ijdb.14756325  0.617
2003 Lynch J, Desplan C. Evolution of development: beyond bicoid. Current Biology : Cb. 13: R557-9. PMID 12867048 DOI: 10.1016/S0960-9822(03)00472-X  0.596
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