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Ramon Diaz-Uriarte, Ph.D. - Publications

Affiliations: 
University of Wisconsin, Madison, Madison, WI 
 Universidad Autónoma de Madrid, Madrid, Comunidad de Madrid, Spain 
Area:
Behavioral neuroendocrinology
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Hosseini SR, Diaz-Uriarte R, Markowetz F, Beerenwinkel N. Estimating the predictability of cancer evolution. Bioinformatics (Oxford, England). 35: i389-i397. PMID 31510665 DOI: 10.1093/Bioinformatics/Btz332  0.315
2019 Diaz-Uriarte R, Vasallo C. Every which way? On predicting tumor evolution using cancer progression models. Plos Computational Biology. 15: e1007246. PMID 31374072 DOI: 10.1371/Journal.Pcbi.1007246  0.422
2017 Diaz-Uriarte R. Cancer Progression Models and Fitness Landscapes: a Many-to-Many Relationship. Bioinformatics (Oxford, England). PMID 29048486 DOI: 10.1093/Bioinformatics/Btx663  0.439
2017 Diaz-Uriarte R. OncoSimulR: genetic simulation with arbitrary epistasis and mutator genes in asexual populations. Bioinformatics (Oxford, England). PMID 28186227 DOI: 10.1093/Bioinformatics/Btx077  0.442
2016 Diaz-Uriarte R. OncoSimulR: genetic simulation of cancer progression with arbitrary epistasis and mutator genes F1000research. 5. DOI: 10.7490/F1000Research.1112860.1  0.408
2015 Diaz-Uriarte R. Identifying restrictions in the order of accumulation of mutations during tumor progression: effects of passengers, evolutionary models, and sampling. Bmc Bioinformatics. 16: 41. PMID 25879190 DOI: 10.1186/S12859-015-0466-7  0.429
2013 Landa I, Boullosa C, Inglada-Pérez L, Sastre-Perona A, Pastor S, Velázquez A, Mancikova V, Ruiz-Llorente S, Schiavi F, Marcos R, Malats N, Opocher G, Diaz-Uriarte R, Santisteban P, Valencia A, et al. An epistatic interaction between the PAX8 and STK17B genes in papillary thyroid cancer susceptibility. Plos One. 8: e74765. PMID 24086368 DOI: 10.1371/Journal.Pone.0074765  0.337
2013 Landa I, Boullosa C, Inglada-Pérez L, Sastre-Perona A, Pastor S, Velázquez A, Mancikova V, Ruiz-Llorente S, Schiavi F, Marcos R, Malats N, Opocher G, Diaz-Uriarte R, Santisteban P, Valencia A, et al. Correction: An Epistatic Interaction between the PAX8 and STK17B Genes in Papillary Thyroid Cancer Susceptibility Plos One. 8. DOI: 10.1371/Annotation/Cd94C3Eb-70F2-4Dfa-85Be-B3Fc41E495C3  0.302
2012 Barderas R, Babel I, Díaz-Uriarte R, Moreno V, Suárez A, Bonilla F, Villar-Vázquez R, Capellá G, Casal JI. An optimized predictor panel for colorectal cancer diagnosis based on the combination of tumor-associated antigens obtained from protein and phage microarrays. Journal of Proteomics. 75: 4647-55. PMID 22465712 DOI: 10.1016/J.Jprot.2012.03.004  0.418
2011 Subirana I, Diaz-Uriarte R, Lucas G, Gonzalez JR. CNVassoc: Association analysis of CNV data using R. Bmc Medical Genomics. 4: 47. PMID 21609482 DOI: 10.1186/1755-8794-4-47  0.344
2011 Babel I, Barderas R, Diaz-Uriarte R, Moreno V, Suarez A, Fernandez-Aceñero MJ, Salazar R, Capellá G, Casal JI. Identification of MST1/STK4 and SULF1 proteins as autoantibody targets for the diagnosis of colorectal cancer by using phage microarrays. Molecular & Cellular Proteomics : McP. 10: M110.001784. PMID 21228115 DOI: 10.1074/Mcp.M110.001784  0.331
2011 Fuxjager MJ, Foufopoulos J, Diaz-Uriarte R, Marler CA. Functionally opposing effects of testosterone on two different types of parasite: Implications for the immunocompetence handicap hypothesis Functional Ecology. 25: 132-138. DOI: 10.1111/J.1365-2435.2010.01784.X  0.613
2010 Carro A, Rico D, Rueda OM, Díaz-Uriarte R, Pisano DG. waviCGH: a web application for the analysis and visualization of genomic copy number alterations. Nucleic Acids Research. 38: W182-7. PMID 20507915 DOI: 10.1093/Nar/Gkq441  0.321
2010 Moneo V, Diaz-Uriarte R, Serelde B, Blanco-Aparicio C, Aviles P, Gema S, Tercero JC, Cuevas C, Carnero A. Abstract 1685: Identification of PDGFR-a as a predictive biomarker for response to Zalypsis® Cancer Research. 70: 1685-1685. DOI: 10.1158/1538-7445.Am10-1685  0.301
2009 Rueda OM, Diaz-Uriarte R. Detection of recurrent copy number alterations in the genome: taking among-subject heterogeneity seriously. Bmc Bioinformatics. 10: 308. PMID 19775444 DOI: 10.1186/1471-2105-10-308  0.339
2009 Babel I, Barderas R, Díaz-Uriarte R, Martínez-Torrecuadrada JL, Sánchez-Carbayo M, Casal JI. Identification of tumor-associated autoantigens for the diagnosis of colorectal cancer in serum using high density protein microarrays. Molecular & Cellular Proteomics : McP. 8: 2382-95. PMID 19638618 DOI: 10.1074/Mcp.M800596-Mcp200  0.323
2009 Morrissey ER, Diaz-Uriarte R. Pomelo II: finding differentially expressed genes. Nucleic Acids Research. 37: W581-6. PMID 19435879 DOI: 10.1093/Nar/Gkp366  0.361
2009 Rueda OM, Diaz-Uriarte R. RJaCGH: Bayesian analysis of aCGH arrays for detecting copy number changes and recurrent regions. Bioinformatics (Oxford, England). 25: 1959-60. PMID 19420051 DOI: 10.1093/Bioinformatics/Btp307  0.3
2008 Alibés A, Cañada A, Díaz-Uriarte R. PaLS: filtering common literature, biological terms and pathway information. Nucleic Acids Research. 36: W364-7. PMID 18467422 DOI: 10.1093/Nar/Gkn251  0.34
2008 Diaz-Uriarte R. SignS: a parallelized, open-source, freely available, web-based tool for gene selection and molecular signatures for survival and censored data. Bmc Bioinformatics. 9: 30. PMID 18208605 DOI: 10.1186/1471-2105-9-30  0.369
2007 Alibés A, Morrissey ER, Cañada A, Rueda OM, Casado D, Yankilevich P, Díaz-Uriarte R. Asterias: a parallelized web-based suite for the analysis of expression and aCGH data. Cancer Informatics. 3: 1-9. PMID 19455230 DOI: 10.4137/Cin.S0  0.403
2007 Diaz-Uriarte R. GeneSrF and varSelRF: a web-based tool and R package for gene selection and classification using random forest. Bmc Bioinformatics. 8: 328. PMID 17767709 DOI: 10.1186/1471-2105-8-328  0.358
2007 Collado M, Garcia V, Garcia JM, Alonso I, Lombardia L, Diaz-Uriarte R, Fernández LA, Zaballos A, Bonilla F, Serrano M. Genomic profiling of circulating plasma RNA for the analysis of cancer. Clinical Chemistry. 53: 1860-3. PMID 17717129 DOI: 10.1373/Clinchem.2007.089201  0.331
2007 Díaz-Uriarte R, Rueda OM. ADaCGH: A parallelized web-based application and R package for the analysis of aCGH data. Plos One. 2: e737. PMID 17710137 DOI: 10.1371/Journal.Pone.0000737  0.329
2007 Rueda OM, Díaz-Uriarte R. Flexible and accurate detection of genomic copy-number changes from aCGH. Plos Computational Biology. 3: e122. PMID 17590078 DOI: 10.1371/Journal.Pcbi.0030122  0.409
2007 Díaz-Uriarte R, Alibés A, Morrissey ER, Cañada A, Rueda OM, Neves ML. Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite. Nucleic Acids Research. 35: W75-80. PMID 17488846 DOI: 10.1093/Nar/Gkm229  0.356
2007 Alibés A, Yankilevich P, Cañada A, Díaz-Uriarte R. IDconverter and IDClight: conversion and annotation of gene and protein IDs. Bmc Bioinformatics. 8: 9. PMID 17214880 DOI: 10.1186/1471-2105-8-9  0.35
2006 Díaz-Uriarte R, Alvarez de Andrés S. Gene selection and classification of microarray data using random forest. Bmc Bioinformatics. 7: 3. PMID 16398926 DOI: 10.1186/1471-2105-7-3  0.351
2005 Vaquerizas JM, Conde L, Yankilevich P, Cabezón A, Minguez P, Díaz-Uriarte R, Al-Shahrour F, Herrero J, Dopazo J. GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data. Nucleic Acids Research. 33: W616-20. PMID 15980548 DOI: 10.1093/Nar/Gki500  0.362
2005 Al-Shahrour F, Díaz-Uriarte R, Dopazo J. Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information. Bioinformatics (Oxford, England). 21: 2988-93. PMID 15840702 DOI: 10.1093/Bioinformatics/Bti457  0.381
2005 Meléndez B, Martínez-Delgado B, Cuadros M, Fernández V, Díaz-Uriarte R, Benítez J. Identification of amplified and highly expressed genes in amplicons of the T-cell line huT78 detected by cDNA microarray CGH. Molecular Cancer. 4: 5. PMID 15656903 DOI: 10.1186/1476-4598-4-5  0.36
2004 Meléndez B, Díaz-Uriarte R, Cuadros M, Martínez-Ramírez A, Fernández-Piqueras J, Dopazo A, Cigudosa JC, Rivas C, Dopazo J, Martínez-Delgado B, Benítez J. Gene expression analysis of chromosomal regions with gain or loss of genetic material detected by comparative genomic hybridization. Genes, Chromosomes & Cancer. 41: 353-65. PMID 15382261 DOI: 10.1002/Gcc.20105  0.368
2004 Vaquerizas JM, Dopazo J, Díaz-Uriarte R. DNMAD: web-based diagnosis and normalization for microarray data. Bioinformatics (Oxford, England). 20: 3656-8. PMID 15247094 DOI: 10.1093/Bioinformatics/Bth401  0.332
2004 Al-Shahrour F, Díaz-Uriarte R, Dopazo J. FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics (Oxford, England). 20: 578-80. PMID 14990455 DOI: 10.1093/Bioinformatics/Btg455  0.349
2003 Herrero J, Díaz-Uriarte R, Dopazo J. An approach to inferring transcriptional regulation among genes from large-scale expression data. Comparative and Functional Genomics. 4: 148-54. PMID 18629097 DOI: 10.1002/Cfg.237  0.346
2003 Herrero J, Al-Shahrour F, Díaz-Uriarte R, Mateos A, Vaquerizas JM, Santoyo J, Dopazo J. GEPAS: A web-based resource for microarray gene expression data analysis. Nucleic Acids Research. 31: 3461-7. PMID 12824345 DOI: 10.1093/Nar/Gkg591  0.36
2003 Herrero J, Díaz-Uriarte R, Dopazo J. Gene expression data preprocessing. Bioinformatics (Oxford, England). 19: 655-6. PMID 12651726 DOI: 10.1093/Bioinformatics/Btg040  0.327
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