Saverio Vicario, Ph.D. - Publications

Affiliations: 
Yale University, New Haven, CT 

25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Sun C, Huang J, Wang Y, Zhao X, Su L, Thomas GWC, Zhao M, Zhang X, Jungreis I, Kellis M, Vicario S, Sharakhov IV, Bondarenko SM, Hasselmann M, Kim CN, et al. Genus-wide characterization of bumblebee genomes provides insights into their evolution and variation in ecological and behavioral traits. Molecular Biology and Evolution. PMID 32946576 DOI: 10.1093/Molbev/Msaa240  0.426
2018 Balech B, Sandionigi A, Manzari C, Trucchi E, Tullo A, Licciulli F, Grillo G, Sbisà E, De Felici S, Saccone C, D'Erchia AM, Cesaroni D, Casiraghi M, Vicario S. Tackling critical parameters in metazoan meta-barcoding experiments: a preliminary study based on DNA barcode. Peerj. 6: e4845. PMID 29915686 DOI: 10.7717/Peerj.4845  0.379
2018 Balech B, Monaco A, Perniola M, Santamaria M, Donvito G, Vicario S, Maggi G, Pesole G. DNA Multiple Sequence Alignment Guided by Protein Domains: The MSA-PAD 2.0 Method. Methods in Molecular Biology (Clifton, N.J.). 1746: 173-180. PMID 29492894 DOI: 10.1007/978-1-4939-7683-6_13  0.363
2017 Benazzo A, Trucchi E, Cahill JA, Maisano Delser P, Mona S, Fumagalli M, Bunnefeld L, Cornetti L, Ghirotto S, Girardi M, Ometto L, Panziera A, Rota-Stabelli O, Zanetti E, Karamanlidis A, ... ... Vicario S, et al. Survival and divergence in a small group: The extraordinary genomic history of the endangered Apennine brown bear stragglers. Proceedings of the National Academy of Sciences of the United States of America. PMID 29078308 DOI: 10.1073/Pnas.1707279114  0.367
2017 Obst M, Vicario S, Lundin K, Berggren M, Karlsson A, Haines R, Williams A, Goble C, Mathew C, Güntsch A. Marine long-term biodiversity assessment suggests loss of rare species in the Skagerrak and Kattegat region Marine Biodiversity. 48: 2165-2176. DOI: 10.1007/S12526-017-0749-5  0.354
2016 Hardisty AR, Bacall F, Beard N, Balcázar-Vargas MP, Balech B, Barcza Z, Bourlat SJ, De Giovanni R, de Jong Y, De Leo F, Dobor L, Donvito G, Fellows D, Guerra AF, Ferreira N, ... ... Vicario S, et al. BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology. Bmc Ecology. 16: 49. PMID 27765035 DOI: 10.1186/S12898-016-0103-Y  0.307
2015 Balech B, Vicario S, Donvito G, Monaco A, Notarangelo P, Pesole G. MSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information. Bioinformatics (Oxford, England). PMID 25819080 DOI: 10.1093/Bioinformatics/Btv141  0.345
2015 Sandionigi A, Vicario S, Prosdocimi EM, Galimberti A, Ferri E, Bruno A, Balech B, Mezzasalma V, Casiraghi M. Towards a better understanding of Apis mellifera and Varroa destructor microbiomes: introducing 'phyloh' as a novel phylogenetic diversity analysis tool. Molecular Ecology Resources. 15: 697-710. PMID 25367306 DOI: 10.1111/1755-0998.12341  0.341
2014 Mathew C, Güntsch A, Obst M, Vicario S, Haines R, Williams AR, de Jong Y, Goble C. A semi-automated workflow for biodiversity data retrieval, cleaning, and quality control. Biodiversity Data Journal. e4221. PMID 25535486 DOI: 10.3897/Bdj.2.E4221  0.308
2012 Kurelac I, Lang M, Zuntini R, Calabrese C, Simone D, Vicario S, Santamaria M, Attimonelli M, Romeo G, Gasparre G. Searching for a needle in the haystack: comparing six methods to evaluate heteroplasmy in difficult sequence context. Biotechnology Advances. 30: 363-71. PMID 21689740 DOI: 10.1016/J.Biotechadv.2011.06.001  0.331
2012 Licciulli F, Catalano D, D'Elia D, De Caro G, Grillo G, Leo P, Mulè G, Pannarale P, Pappadà G, Rubino F, Susca A, Vicario S, Scioscia G. MBLabDB: a social database for molecular biodiversity data Embnet.Journal. 18: 121. DOI: 10.14806/Ej.18.B.574  0.334
2012 Vicario S, Balech B, Donvito G, Notarangelo P, Pesole G. The BioVel Project: Robust phylogenetic workflows running on the GRID Embnet.Journal. 18: 77-79. DOI: 10.14806/Ej.18.B.557  0.336
2011 Castellana S, Vicario S, Saccone C. Evolutionary patterns of the mitochondrial genome in Metazoa: exploring the role of mutation and selection in mitochondrial protein coding genes. Genome Biology and Evolution. PMID 21551352 DOI: 10.1093/Gbe/Evr040  0.374
2011 Powell JR, Dion K, Papaceit M, Aguadé M, Vicario S, Garrick RC. Nonrecombining genes in a recombination environment: the Drosophila "dot" chromosome. Molecular Biology and Evolution. 28: 825-33. PMID 20940345 DOI: 10.1093/Molbev/Msq258  0.476
2011 Vicario S, Hardisty A, Haitas N. BioVeL: Biodiversity Virtual e-Laboratory Embnet.Journal. 17: 5. DOI: 10.14806/Ej.17.2.238  0.316
2009 Santamaria M, Vicario S, Pappadà G, Scioscia G, Scazzocchio C, Saccone C. Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria. Bmc Bioinformatics. 10: S15. PMID 19534740 DOI: 10.1186/1471-2105-10-S6-S15  0.422
2008 Vicario S, Mason CE, White KP, Powell JR. Developmental stage and level of codon usage bias in Drosophila. Molecular Biology and Evolution. 25: 2269-77. PMID 18755761 DOI: 10.1093/Molbev/Msn189  0.459
2007 Vicario S, Moriyama EN, Powell JR. Codon usage in twelve species of Drosophila. Bmc Evolutionary Biology. 7: 226. PMID 18005411 DOI: 10.1186/1471-2148-7-226  0.538
2007 Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, ... ... Vicario S, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-18. PMID 17994087 DOI: 10.1038/Nature06341  0.537
2007 Santamaria M, Lanave C, Vicario S, Saccone C. Variability of the mitochondrial genome in mammals at the inter-species/intra-species boundary. Biological Chemistry. 388: 943-6. PMID 17696778 DOI: 10.1515/Bc.2007.121  0.413
2007 Steinfartz S, Vicario S, Arntzen JW, Caccone A. A Bayesian approach on molecules and behavior: reconsidering phylogenetic and evolutionary patterns of the Salamandridae with emphasis on Triturus newts. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 308: 139-62. PMID 16969762 DOI: 10.1002/Jez.B.21119  0.408
2006 Suatoni E, Vicario S, Rice S, Snell T, Caccone A. An analysis of species boundaries and biogeographic patterns in a cryptic species complex: the rotifer--Brachionus plicatilis. Molecular Phylogenetics and Evolution. 41: 86-98. PMID 16815046 DOI: 10.1016/J.Ympev.2006.04.025  0.371
2004 Pinou T, Vicario S, Marschner M, Caccone A. Relict snakes of North America and their relationships within Caenophidia, using likelihood-based Bayesian methods on mitochondrial sequences. Molecular Phylogenetics and Evolution. 32: 563-74. PMID 15223038 DOI: 10.1016/J.Ympev.2004.02.005  0.398
2003 Vicario S, Caccone A, Gauthier J. Xantusiid "night" lizards: a puzzling phylogenetic problem revisited using likelihood-based Bayesian methods on mtDNA sequences. Molecular Phylogenetics and Evolution. 26: 243-61. PMID 12565035 DOI: 10.1016/S1055-7903(02)00313-5  0.402
2001 Mazzaglia A, Anselmi N, Vicario S, Vannini A. Sequence analysis of the 5.8S rDNA and ITS regions in evaluating genetic relationships among some species of Hypoxylon and related genera Mycological Research. 105: 670-675. DOI: 10.1017/S0953756201004142  0.39
Show low-probability matches.