Ah-Ram Kim, Ph.D. - Publications

Institution:
Stony Brook University, Stony Brook, NY, United States
Area:
segment determination, transcriptional regulation

13 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kang CK, Kim AR. Deep molecular learning of transcriptional control of a synthetic CRE enhancer and its variants. Iscience. 27: 108747. PMID 38222110 DOI: 10.1016/j.isci.2023.108747  0.324
2020 Verboon JM, Mahmut D, Kim AR, Nakamura M, Abdulhay NJ, Nandakumar SK, Gupta N, Akie TE, Geddis AE, Manes B, Kapp ME, Hofmann I, Gabriel SB, Klein DE, Williams DA, et al. Infantile Myelofibrosis and Myeloproliferation with CDC42 Dysfunction. Journal of Clinical Immunology. PMID 32303876 DOI: 10.1007/S10875-020-00778-7  0.306
2017 Barr KA, Martinez C, Moran JR, Kim AR, Ramos AF, Reinitz J. Synthetic enhancer design by in silico compensatory evolution reveals flexibility and constraint in cis-regulation. Bmc Systems Biology. 11: 116. PMID 29187214 DOI: 10.1186/S12918-017-0485-2  0.63
2017 Kim AR, Choi EB, Kim MY, Choi KW. Angiotensin-converting enzyme Ance is cooperatively regulated by Mad and Pannier in Drosophila imaginal discs. Scientific Reports. 7: 13174. PMID 29030610 DOI: 10.1038/s41598-017-13487-w  0.315
2017 Kim AR, Ulirsch JC, Wilmes S, Unal E, Moraga I, Karakukcu M, Yuan D, Kazerounian S, Abdulhay NJ, King DS, Gupta N, Gabriel SB, Lander ES, Patiroglu T, Ozcan A, et al. Functional Selectivity in Cytokine Signaling Revealed Through a Pathogenic EPO Mutation. Cell. 168: 1053-1064.e15. PMID 28283061 DOI: 10.1016/J.Cell.2017.02.026  0.395
2016 Oguntoyinbo FA, Cho GS, Brinks E, Fiedler G, Kabisch J, Koberg S, Bockelmann W, Neve H, Kang YG, Yun D, Kim AR, Narbad A, Franz CM. Draft Genome Sequence of Lactobacillus plantarum BFE 5092 Isolated from Maasai Fermented Milk. Genome Announcements. 4. PMID 27257199 DOI: 10.1128/Genomea.00481-16  0.335
2015 Kim CK, Seol YJ, Shin Y, Lim HM, Lee GS, Kim AR, Lee TH, Lee JH, Park DS, Yoo S, Kim YH, Kim YK. Whole-genome resequencing and transcriptomic analysis to identify genes involved in leaf-color diversity in ornamental rice plants. Plos One. 10: e0124071. PMID 25897514 DOI: 10.1371/journal.pone.0124071  0.348
2014 Martinez C, Rest JS, Kim AR, Ludwig M, Kreitman M, White K, Reinitz J. Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change. Molecular Biology and Evolution. 31: 903-16. PMID 24408913 DOI: 10.1093/Molbev/Msu042  0.651
2013 Martinez CA, Barr KA, Kim AR, Reinitz J. A synthetic biology approach to the development of transcriptional regulatory models and custom enhancer design. Methods (San Diego, Calif.). 62: 91-8. PMID 23732772 DOI: 10.1016/J.Ymeth.2013.05.014  0.672
2013 Kim AR, Martinez C, Ionides J, Ramos AF, Ludwig MZ, Ogawa N, Sharp DH, Reinitz J. Rearrangements of 2.5 kilobases of noncoding DNA from the Drosophila even-skipped locus define predictive rules of genomic cis-regulatory logic. Plos Genetics. 9: e1003243. PMID 23468638 DOI: 10.1371/Journal.Pgen.1003243  0.686
2009 Manu, Surkova S, Spirov AV, Gursky VV, Janssens H, Kim AR, Radulescu O, Vanario-Alonso CE, Sharp DH, Samsonova M, Reinitz J. Canalization of gene expression in the Drosophila blastoderm by gap gene cross regulation. Plos Biology. 7: e1000049. PMID 19750121 DOI: 10.1371/Journal.Pbio.1000049  0.741
2009 Manu, Surkova S, Spirov AV, Gursky VV, Janssens H, Kim AR, Radulescu O, Vanario-Alonso CE, Sharp DH, Samsonova M, Reinitz J. Canalization of gene expression and domain shifts in the Drosophila blastoderm by dynamical attractors. Plos Computational Biology. 5: e1000303. PMID 19282965 DOI: 10.1371/Journal.Pcbi.1000303  0.719
2006 Janssens H, Hou S, Jaeger J, Kim AR, Myasnikova E, Sharp D, Reinitz J. Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene. Nature Genetics. 38: 1159-65. PMID 16980977 DOI: 10.1038/Ng1886  0.754
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