Ryan T. Terry-Lorenzo, Ph.D. - Related publications

Duke University, Durham, NC 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Wilkinson B, Coba MP. Molecular architecture of postsynaptic Interactomes. Cellular Signalling. 76: 109782. PMID 32941943 DOI: 10.1016/j.cellsig.2020.109782   
2020 Piazza I, Beaton N, Bruderer R, Knobloch T, Barbisan C, Chandat L, Sudau A, Siepe I, Rinner O, de Souza N, Picotti P, Reiter L. A machine learning-based chemoproteomic approach to identify drug targets and binding sites in complex proteomes. Nature Communications. 11: 4200. PMID 32826910 DOI: 10.1038/s41467-020-18071-x   
2020 Arooj M, Shehadi I, Nassab CN, Mohamed AA. Physicochemical stability study of protein-benzoic acid complexes using molecular dynamics simulations. Amino Acids. 52: 1353-1362. PMID 33006112 DOI: 10.1007/s00726-020-02897-2   
2020 Medfisch SM, Muehl EM, Morrissey JH, Bailey RC. Phosphatidylethanolamine-phosphatidylserine binding synergy of seven coagulation factors revealed using Nanodisc arrays on silicon photonic sensors. Scientific Reports. 10: 17407. PMID 33060620 DOI: 10.1038/s41598-020-73647-3   
2020 Sayyed-Ahmad A, Gorfe AA. How to make an undruggable enzyme druggable: lessons from ras proteins. Advances in Protein Chemistry and Structural Biology. 122: 181-202. PMID 32951811 DOI: 10.1016/bs.apcsb.2020.05.003   
2020 Mondal P, Natesh J, Abdul Salam AA, Thiyagarajan S, Meeran SM. Traditional medicinal plants against replication, maturation and transmission targets of SARS-CoV-2: computational investigation. Journal of Biomolecular Structure & Dynamics. 1-18. PMID 33150860 DOI: 10.1080/07391102.2020.1842246   
2020 Ogbu SC, Musich PR, Zhang J, Yao ZQ, Howe PH, Jiang Y. The role of Disabled-2 (Dab2) in diseases. Gene. 145202. PMID 33059028 DOI: 10.1016/j.gene.2020.145202   
2020 Adihou H, Gopalakrishnan R, Förster T, Guéret SM, Gasper R, Geschwindner S, Carrillo García C, Karatas H, Pobbati AV, Vazquez-Chantada M, Davey P, Wassvik CM, Pang JKS, Soh BS, Hong W, et al. A protein tertiary structure mimetic modulator of the Hippo signalling pathway. Nature Communications. 11: 5425. PMID 33110077 DOI: 10.1038/s41467-020-19224-8   
2020 Das S, Scholes HM, Sen N, Orengo C. CATH functional families predict functional sites in proteins. Bioinformatics (Oxford, England). PMID 33135053 DOI: 10.1093/bioinformatics/btaa937   
2020 Will JM, Erbacher C, Sperling M, Karst U. A mass spectrometry-based approach gives new insight into organotin-protein interactions. Metallomics : Integrated Biometal Science. PMID 32930317 DOI: 10.1039/d0mt00171f   
2020 Emirik M. Potential therapeutic effect of turmeric contents against SARS-CoV-2 compared with experimental COVID-19 therapies: in silico study. Journal of Biomolecular Structure & Dynamics. 1-14. PMID 33078675 DOI: 10.1080/07391102.2020.1835719   
2020 Nowak K, Rosenthal F, Karlberg T, Bütepage M, Thorsell AG, Dreier B, Grossmann J, Sobek J, Imhof R, Lüscher B, Schüler H, Plückthun A, Leslie Pedrioli DM, Hottiger MO. Engineering Af1521 improves ADP-ribose binding and identification of ADP-ribosylated proteins. Nature Communications. 11: 5199. PMID 33060572 DOI: 10.1038/s41467-020-18981-w   
2020 Schummer A, Maier R, Gabay-Maskit S, Hansen T, Mühlhäuser WWD, Suppanz I, Fadel A, Schuldiner M, Girzalsky W, Oeljeklaus S, Zalckvar E, Erdmann R, Warscheid B. Pex14p Phosphorylation Modulates Import of Citrate Synthase 2 Into Peroxisomes in . Frontiers in Cell and Developmental Biology. 8: 549451. PMID 33042991 DOI: 10.3389/fcell.2020.549451   
2020 Sung YY, Son E, Im G, Kim DS. Herbal Combination of and Inhibits Adipogenesis and Promotes Browning via AMPK Activation in 3T3-L1 Adipocytes. Plants (Basel, Switzerland). 9. PMID 33114092 DOI: 10.3390/plants9111422   
2020 Zhao B, Zhang Z, Chen X, Shen Y, Qin Y, Yang X, Xing Z, Zhang S, Long X, Zhang Y, An S, Wu H, Qi Y. The important roles of protein SUMOylation in the occurrence and development of leukemia and clinical implications. Journal of Cellular Physiology. PMID 33151565 DOI: 10.1002/jcp.30143   
2020 Basu A, Sarkar A, Maulik U. Molecular docking study of potential phytochemicals and their effects on the complex of SARS-CoV2 spike protein and human ACE2. Scientific Reports. 10: 17699. PMID 33077836 DOI: 10.1038/s41598-020-74715-4   
2020 Rowlison T, Cleland TP, Ottinger MA, Comizzoli P. Novel proteomic profiling of epididymal extracellular vesicles in the domestic cat reveals proteins related to sequential sperm maturation with differences observed between normospermic and teratospermic individuals. Molecular & Cellular Proteomics : McP. PMID 33008835 DOI: 10.1074/mcp.RA120.002251   
2020 Fiorentini F, Esposito D, Rittinger K. Does it take two to tango? RING domain self-association and activity in TRIM E3 ubiquitin ligases. Biochemical Society Transactions. PMID 33170204 DOI: 10.1042/BST20200383   
2020 Ahamad S, Gupta D, Kumar V. Targeting SARS-CoV-2 nucleocapsid oligomerization: Insights from molecular docking and molecular dynamics simulations. Journal of Biomolecular Structure & Dynamics. 1-14. PMID 33140703 DOI: 10.1080/07391102.2020.1839563   
2020 Niu J, Luo G, Liu X, Huang Y, Tang J, Wang B, Lu Y, Cai J, Jian J. Characterization and functional analysis of a galectin-related protein B from Nile tilapia involved in the immune response to bacterial infection. Journal of Fish Diseases. PMID 33040388 DOI: 10.1111/jfd.13273   
2020 Martin-Martin I, Smith LB, Chagas AC, Sá-Nunes A, Shrivastava G, Valenzuela-Leon PC, Calvo E. D7 Salivary Protein Prevents Host Hemostasis and Inflammation. Biomolecules. 10. PMID 32992542 DOI: 10.3390/biom10101372   
2020 Ferdous N, Reza MN, Emon MTH, Islam MS, Mohiuddin AKM, Hossain MU. Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of Streptomyces coelicolor A3(2). Genomics & Informatics. 18: e28. PMID 33017872 DOI: 10.5808/GI.2020.18.3.e28   
2020 Ferdous N, Reza MN, Emon MTH, Islam MS, Mohiuddin AKM, Hossain MU. Molecular characterization and functional annotation of a hypothetical protein (SCO0618) of Streptomyces coelicolor A3(2). Genomics & Informatics. 18: e28. PMID 33017872 DOI: 10.5808/GI.2020.18.3.e28   
2020 El Kantar S, Nehmeh B, Saad P, Mitri G, Estephan C, Mroueh M, Akoury E, Taleb RI. Derivatization and combination therapy of current COVID-19 therapeutic agents: a review of mechanistic pathways, adverse effects, and binding sites. Drug Discovery Today. PMID 32801052 DOI: 10.1016/j.drudis.2020.08.002   
2020 Eckhard U, Blöchl C, Jenkins BGL, Mansfield MJ, Huber CG, Doxey AC, Brandstetter H. Identification and characterization of the proteolytic flagellin from the common freshwater bacterium Hylemonella gracilis. Scientific Reports. 10: 19052. PMID 33149258 DOI: 10.1038/s41598-020-76010-8   
2020 Trueba-Santiso A, Wasmund K, Soder-Walz JM, Marco-Urrea E, Adrian L. Genome Sequence, Proteome Profile, and Identification of a Multiprotein Reductive Dehalogenase Complex in Strain BRE15M. Journal of Proteome Research. PMID 32975419 DOI: 10.1021/acs.jproteome.0c00569   
2020 Rao C, Huisman DH, Vieira HM, Frodyma DE, Neilsen BK, Chakraborty B, Hight SK, White MA, Fisher KW, Lewis RE. A Gene Expression High-Throughput Screen (GE-HTS) for Coordinated Detection of Functionally Similar Effectors in Cancer. Cancers. 12. PMID 33120942 DOI: 10.3390/cancers12113143   
2020 Sun H, Jia H, Ramirez-Diaz DA, Budisa N, Schwille P. Fine-tuning protein self-organization by orthogonal chemo-optogenetic tools. Angewandte Chemie (International Ed. in English). PMID 33155720 DOI: 10.1002/anie.202008691   
2020 Avsar SY, Kapinos LE, Schoenenberger CA, Schertler GFX, Mühle J, Meger B, Lim RYH, Ostermaier MK, Lesca E, Palivan CG. Immobilization of arrestin-3 on different biosensor platforms for evaluating GPCR binding. Physical Chemistry Chemical Physics : Pccp. PMID 33079118 DOI: 10.1039/d0cp01464h   
2020 Di Rienzo L, Milanetti E, Testi C, Montemiglio LC, Baiocco P, Boffi A, Ruocco G. A novel strategy for molecular interfaces optimization: The case of Ferritin-Transferrin receptor interaction. Computational and Structural Biotechnology Journal. 18: 2678-2686. PMID 33101606 DOI: 10.1016/j.csbj.2020.09.020   
2020 Cheng L, Zhang W, Hu J, Zhang Z, Liu Y, Lin Y. Characterization of the Key Region and Putative Phosphorylation Sites of EcaICE1 in its Molecular Interaction with the EcaHOS1 Protein in Eucalyptus camaldulensis. Plant Biology (Stuttgart, Germany). PMID 33107181 DOI: 10.1111/plb.13205   
2020 Jin J, Zhi X, Wang X, Meng D. Protein palmitoylation and its pathophysiological relevance. Journal of Cellular Physiology. PMID 33094504 DOI: 10.1002/jcp.30122   
2020 Kumar R, Donakonda S, Müller SA, Bötzel K, Höglinger GU, Koeglsperger T. FGF2 Affects Parkinson's Disease-Associated Molecular Networks Through Exosomal Rab8b/Rab31. Frontiers in Genetics. 11: 572058. PMID 33101391 DOI: 10.3389/fgene.2020.572058   
2020 Soini L, Leysen S, Davis J, Westwood M, Ottmann C. The 14-3-3/SLP76 protein-protein interaction in T-cell receptor signaling: a structural and biophysical characterization. Febs Letters. PMID 33159816 DOI: 10.1002/1873-3468.13993   
2020 Xue W, Zhang SX, He WT, Hong JY, Jiang LL, Hu HY. Domain interactions reveal auto-inhibition of the deubiquitinating enzyme USP19 and its activation by HSP90 in modulation of huntingtin aggregation. The Biochemical Journal. PMID 33094816 DOI: 10.1042/BCJ20200536   
2020 Chen J, Gao K, Wang R, Nguyen DD, Wei GW. Review of COVID-19 Antibody Therapies. Annual Review of Biophysics. PMID 33064571 DOI: 10.1146/annurev-biophys-062920-063711   
2020 Tan F, Sun N, Zhang L, Wu J, Xiao S, Tan Q, Uversky VN, Liu Y. Functional characterization of an unknown soybean intrinsically disordered protein in vitro and in Escherichia coli. International Journal of Biological Macromolecules. PMID 33137381 DOI: 10.1016/j.ijbiomac.2020.10.211   
2020 Qianzhu H, Welegedara AP, Williamson H, McGrath AE, Mahawaththa MC, Dixon NE, Otting G, Huber T. Genetic Encoding of -Pentafluorosulfanyl Phenylalanine: A Highly Hydrophobic and Strongly Electronegative Group for Stable Protein Interactions. Journal of the American Chemical Society. PMID 32975937 DOI: 10.1021/jacs.0c07976   
2020 Gaynor AS, Chen W. Conditional Protein Rescue by Binding-Induced Protective Shielding. Acs Synthetic Biology. PMID 33025786 DOI: 10.1021/acssynbio.0c00367   
2020 Cho KF, Branon TC, Udeshi ND, Myers SA, Carr SA, Ting AY. Proximity labeling in mammalian cells with TurboID and split-TurboID. Nature Protocols. PMID 33139955 DOI: 10.1038/s41596-020-0399-0   
2020 North OI, Davidson AR. Phage proteins required for tail fiber assembly also bind specifically to the surface of host bacterial strains. Journal of Bacteriology. PMID 33139482 DOI: 10.1128/JB.00406-20   
2020 Swargiary A, Mahmud S, Saleh MA. Screening of phytochemicals as potent inhibitor of 3-chymotrypsin and papain-like proteases of SARS-CoV2: an in silico approach to combat COVID-19. Journal of Biomolecular Structure & Dynamics. 1-15. PMID 33089730 DOI: 10.1080/07391102.2020.1835729   
2020 Rawlings ND, Bateman A. How to use the MEROPS database and website to help understand peptidase specificity. Protein Science : a Publication of the Protein Society. PMID 32920969 DOI: 10.1002/pro.3948   
2020 Stadmiller SS, Aguilar JS, Parnham S, Pielak GJ. Protein-Peptide Binding Energetics under Crowded Conditions. The Journal of Physical Chemistry. B. PMID 32936642 DOI: 10.1021/acs.jpcb.0c05578   
2020 Chen M, Feng Z, Wang S, Lin W, Xie XQ. MCCS, a novel characterization method for protein-ligand complex. Briefings in Bioinformatics. PMID 33051641 DOI: 10.1093/bib/bbaa239   
2020 Lipsh-Sokolik R, Listov D, Fleishman SJ. The AbDesign computational pipeline for modular backbone assembly and design of binders and enzymes. Protein Science : a Publication of the Protein Society. PMID 33040418 DOI: 10.1002/pro.3970   
2020 Jussing E, Lu L, Grafström J, Tegnebratt T, Arnberg F, Rosik HW, Wennborg A, Holmin S, Feldwisch J, Stone-Elander S. [Ga]ABY-028: an albumin-binding domain (ABD) protein-based imaging tracer for positron emission tomography (PET) studies of altered vascular permeability and predictions of albumin-drug conjugate transport. Ejnmmi Research. 10: 106. PMID 32960353 DOI: 10.1186/s13550-020-00694-2   
2020 Singh R, Gautam A, Chandel S, Ghosh A, Dey D, Roy S, Ravichandiran V, Ghosh D. Protease Inhibitory Effect of Natural Polyphenolic Compounds on SARS-CoV-2: An In Silico Study. Molecules (Basel, Switzerland). 25. PMID 33050360 DOI: 10.3390/molecules25204604   
2020 Huang Y, Hui KM, Ren Q. Expression and functional characterization of the CUB domain-containing protein from the triangle sail mussel (Hyriopsis cumingii) in response to pathogenic infection. Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology. 110521. PMID 33059045 DOI: 10.1016/j.cbpb.2020.110521   
2020 Shi Y, Yu K, Liang A, Huang Y, Ou F, Wei H, Wan X, Yang Y, Zhang W, Jiang Z. Identification and Analysis of the Tegument Protein and Excretory-Secretory Products of the Carcinogenic Liver Fluke . Frontiers in Microbiology. 11: 555730. PMID 33072014 DOI: 10.3389/fmicb.2020.555730