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Albert Cardona, Ph.D. - Publications

Affiliations: 
2008-2011 Institute of Neuroinformatics ETH/Uni Zurich, Zürich, Zürich, Switzerland 
 2012-2019 Janelia Research Campus Howard Hughes Medical Institute, Chevy Chase, MD, United States 
 2015- Department of Physiology, Development and Neuroscience University of Cambridge, Cambridge, England, United Kingdom 
 2020- LMB MRC Laboratory of Molecular Biology, Cambridge, England, United Kingdom 
Area:
connectomics, fruit fly, brain microarchitecture, circuitry, neural circuit reconstruction, TrakEM2, CATMAID
Website:
http://albert.rierol.net
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62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Valdes-Aleman J, Fetter RD, Sales EC, Heckman EL, Venkatasubramanian L, Doe CQ, Landgraf M, Cardona A, Zlatic M. Comparative Connectomics Reveals How Partner Identity, Location, and Activity Specify Synaptic Connectivity in Drosophila. Neuron. PMID 33120017 DOI: 10.1016/j.neuron.2020.10.004  0.44
2020 Imura E, Shimada-Niwa Y, Nishimura T, Hückesfeld S, Schlegel P, Ohhara Y, Kondo S, Tanimoto H, Cardona A, Pankratz MJ, Niwa R. The Corazonin-PTTH Neuronal Axis Controls Systemic Body Growth by Regulating Basal Ecdysteroid Biosynthesis in Drosophila melanogaster. Current Biology : Cb. PMID 32386525 DOI: 10.1016/j.cub.2020.03.050  0.32
2020 Eschbach C, Fushiki A, Winding M, Schneider-Mizell CM, Shao M, Arruda R, Eichler K, Valdes-Aleman J, Ohyama T, Thum AS, Gerber B, Fetter RD, Truman JW, Litwin-Kumar A, Cardona A, et al. Recurrent architecture for adaptive regulation of learning in the insect brain. Nature Neuroscience. PMID 32203499 DOI: 10.1038/s41593-020-0607-9  0.48
2020 Masson JB, Laurent F, Cardona A, Barre C, Skatchkovsky N, Zlatic M, Jovanic T. Identifying neural substrates of competitive interactions and sequence transitions during mechanosensory responses in Drosophila. Plos Genetics. 16: e1008589. PMID 32059010 DOI: 10.1371/journal.pgen.1008589  0.4
2019 Zarin AA, Mark B, Cardona A, Litwin-Kumar A, Doe CQ. A multilayer circuit architecture for the generation of distinct locomotor behaviors in . Elife. 8. PMID 31868582 DOI: 10.7554/eLife.51781  0.44
2019 Hörl D, Rojas Rusak F, Preusser F, Tillberg P, Randel N, Chhetri RK, Cardona A, Keller PJ, Harz H, Leonhardt H, Treier M, Preibisch S. BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples. Nature Methods. PMID 31384047 DOI: 10.1038/s41592-019-0501-0  0.4
2019 Kohsaka H, Zwart MF, Fushiki A, Fetter RD, Truman JW, Cardona A, Nose A. Regulation of forward and backward locomotion through intersegmental feedback circuits in Drosophila larvae. Nature Communications. 10: 2654. PMID 31201326 DOI: 10.1038/s41467-019-10695-y  0.48
2019 Jovanic T, Winding M, Cardona A, Truman JW, Gershow M, Zlatic M. Neural Substrates of Drosophila Larval Anemotaxis. Current Biology : Cb. PMID 30744969 DOI: 10.1016/j.cub.2019.01.009  0.4
2019 Andrade IV, Riebli N, Nguyen BM, Omoto JJ, Cardona A, Hartenstein V. Developmentally Arrested Precursors of Pontine Neurons Establish an Embryonic Blueprint of the Drosophila Central Complex. Current Biology : Cb. PMID 30661802 DOI: 10.1016/j.cub.2018.12.012  0.92
2018 Miroschnikow A, Schlegel P, Schoofs A, Hueckesfeld S, Li F, Schneider-Mizell CM, Fetter RD, Truman JW, Cardona A, Pankratz MJ. Convergence of monosynaptic and polysynaptic sensory paths onto common motor outputs in a feeding connectome. Elife. 7. PMID 30526854 DOI: 10.7554/eLife.40247  0.48
2018 Tastekin I, Khandelwal A, Tadres D, Fessner ND, Truman JW, Zlatic M, Cardona A, Louis M. Sensorimotor pathway controlling stopping behavior during chemotaxis in the larva. Elife. 7. PMID 30465650 DOI: 10.7554/eLife.38740  0.4
2018 Carreira-Rosario A, Zarin AA, Clark MQ, Manning L, Fetter RD, Cardona A, Doe CQ. MDN brain descending neurons coordinately activate backward and inhibit forward locomotion. Elife. 7. PMID 30070205 DOI: 10.7554/eLife.38554  0.44
2018 Saumweber T, Rohwedder A, Schleyer M, Eichler K, Chen YC, Aso Y, Cardona A, Eschbach C, Kobler O, Voigt A, Durairaja A, Mancini N, Zlatic M, Truman JW, Thum AS, et al. Functional architecture of reward learning in mushroom body extrinsic neurons of larval Drosophila. Nature Communications. 9: 1104. PMID 29549237 DOI: 10.1038/s41467-018-03130-1  0.4
2018 Burgos A, Honjo K, Ohyama T, Qian CS, Shin GJ, Gohl DM, Silies M, Tracey WD, Zlatic M, Cardona A, Grueber WB. Nociceptive interneurons control modular motor pathways to promote escape behavior in. Elife. 7. PMID 29528286 DOI: 10.7554/eLife.26016  0.4
2017 Larderet I, Fritsch PM, Gendre N, Neagu-Maier GL, Fetter RD, Schneider-Mizell CM, Truman JW, Zlatic M, Cardona A, Sprecher SG. Organization of the larval visual circuit. Elife. 6. PMID 30726702 DOI: 10.7554/eLife.28387  0.52
2017 Takagi S, Cocanougher BT, Niki S, Miyamoto D, Kohsaka H, Kazama H, Fetter RD, Truman JW, Zlatic M, Cardona A, Nose A. Divergent Connectivity of Homologous Command-like Neurons Mediates Segment-Specific Touch Responses in Drosophila. Neuron. PMID 29198754 DOI: 10.1016/j.neuron.2017.10.030  0.44
2017 Gerhard S, Andrade I, Fetter RD, Cardona A, Schneider-Mizell CM. Conserved neural circuit structure across Drosophila larva development revealed by comparative connectomics. Elife. 6. PMID 29058674 DOI: 10.7554/eLife.29089  0.48
2017 Eichler K, Li F, Litwin-Kumar A, Park Y, Andrade I, Schneider-Mizell CM, Saumweber T, Huser A, Eschbach C, Gerber B, Fetter RD, Truman JW, Priebe CE, Abbott LF, Thum AS, ... ... Cardona A, et al. The complete connectome of a learning and memory centre in an insect brain. Nature. 548: 175-182. PMID 28796202 DOI: 10.1038/nature23455  0.48
2017 Arganda-Carreras I, Kaynig V, Rueden C, Eliceiri KW, Schindelin J, Cardona A, Seung HS. Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification. Bioinformatics (Oxford, England). PMID 28369169 DOI: 10.1093/bioinformatics/btx180  0.64
2017 Beier T, Pape C, Rahaman N, Prange T, Berg S, Bock DD, Cardona A, Knott GW, Plaza SM, Scheffer LK, Koethe U, Kreshuk A, Hamprecht FA. Multicut brings automated neurite segmentation closer to human performance. Nature Methods. 14: 101-102. PMID 28139671 DOI: 10.1038/nmeth.4151  0.44
2017 Funke J, Klein J, Moreno-Noguer F, Cardona A, Cook M. TED: A Tolerant Edit Distance for Segmentation Evaluation. Methods (San Diego, Calif.). PMID 28108198 DOI: 10.1016/j.ymeth.2016.12.013  0.44
2016 Schlegel P, Texada MJ, Miroschnikow A, Schoofs A, Hückesfeld S, Peters M, Schneider-Mizell CM, Lacin H, Li F, Fetter RD, Truman JW, Cardona A, Pankratz MJ. Synaptic transmission parallels neuromodulation in a central food-intake circuit. Elife. 5. PMID 27845623 DOI: 10.7554/eLife.16799  0.48
2016 Jovanic T, Schneider-Mizell CM, Shao M, Masson JB, Denisov G, Fetter RD, Mensh BD, Truman JW, Cardona A, Zlatic M. Competitive Disinhibition Mediates Behavioral Choice and Sequences in Drosophila. Cell. PMID 27720450 DOI: 10.1016/j.cell.2016.09.009  0.48
2016 Zwart MF, Pulver SR, Truman JW, Fushiki A, Fetter RD, Cardona A, Landgraf M. Selective Inhibition Mediates the Sequential Recruitment of Motor Pools. Neuron. 91: 944. PMID 27537488 DOI: 10.1016/j.neuron.2016.07.041  0.48
2016 Zwart MF, Pulver SR, Truman JW, Fushiki A, Cardona A, Landgraf M. Selective Inhibition Mediates the Sequential Recruitment of Motor Pools. Neuron. PMID 27427461 DOI: 10.1016/j.neuron.2016.06.031  0.4
2016 Berck ME, Khandelwal A, Claus L, Hernandez-Nunez L, Si G, Tabone CJ, Li F, Truman JW, Fetter RD, Louis M, Samuel AD, Cardona A. The wiring diagram of a glomerular olfactory system. Elife. 5. PMID 27177418 DOI: 10.7554/eLife.14859  0.92
2016 MacNamee SE, Liu KE, Gerhard S, Tran CT, Fetter RD, Cardona A, Tolbert LP, Oland LA. Astrocytic glutamate transport regulates a Drosophila CNS synapse that lacks astrocyte ensheathment. The Journal of Comparative Neurology. PMID 27073064 DOI: 10.1002/cne.24016  0.92
2016 Schneider-Mizell CM, Gerhard S, Longair M, Kazimiers T, Li F, Zwart MF, Champion A, Midgley FM, Fetter RD, Saalfeld S, Cardona A. Quantitative neuroanatomy for connectomics in Drosophila. Elife. 5. PMID 26990779 DOI: 10.7554/eLife.12059  0.64
2016 Fushiki A, Zwart MF, Kohsaka H, Fetter RD, Cardona A, Nose A. A circuit mechanism for the propagation of waves of muscle contraction in Drosophila. Elife. 5. PMID 26880545 DOI: 10.7554/eLife.13253  0.48
2015 Arganda-Carreras I, Turaga SC, Berger DR, Cireşan D, Giusti A, Gambardella LM, Schmidhuber J, Laptev D, Dwivedi S, Buhmann JM, Liu T, Seyedhosseini M, Tasdizen T, Kamentsky L, Burget R, ... ... Cardona A, et al. Crowdsourcing the creation of image segmentation algorithms for connectomics. Frontiers in Neuroanatomy. 9: 142. PMID 26594156 DOI: 10.3389/fnana.2015.00142  0.92
2015 Heckscher ES, Zarin AA, Faumont S, Clark MQ, Manning L, Fushiki A, Schneider-Mizell CM, Fetter RD, Truman JW, Zwart MF, Landgraf M, Cardona A, Lockery SR, Doe CQ. Even-Skipped(+) Interneurons Are Core Components of a Sensorimotor Circuit that Maintains Left-Right Symmetric Muscle Contraction Amplitude. Neuron. 88: 314-29. PMID 26439528 DOI: 10.1016/j.neuron.2015.09.009  0.92
2015 Ohyama T, Schneider-Mizell CM, Fetter RD, Aleman JV, Franconville R, Rivera-Alba M, Mensh BD, Branson KM, Simpson JH, Truman JW, Cardona A, Zlatic M. A multilevel multimodal circuit enhances action selection in Drosophila. Nature. 520: 633-9. PMID 25896325 DOI: 10.1038/nature14297  0.92
2015 Klein M, Afonso B, Vonner AJ, Hernandez-Nunez L, Berck M, Tabone CJ, Kane EA, Pieribone VA, Nitabach MN, Cardona A, Zlatic M, Sprecher SG, Gershow M, Garrity PA, Samuel AD. Sensory determinants of behavioral dynamics in Drosophila thermotaxis. Proceedings of the National Academy of Sciences of the United States of America. 112: E220-9. PMID 25550513 DOI: 10.1073/pnas.1416212112  0.92
2015 Kreshuk A, Funke J, Cardona A, Hamprecht FA. Who is talking to whom: Synaptic partner detection in anisotropic volumes of insect brain Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9349: 661-668. DOI: 10.1007/978-3-319-24553-9_81  0.92
2014 Funke J, Martel JN, Gerhard S, Andres B, CireÅŸan DC, Giusti A, Gambardella LM, Schmidhuber J, Pfister H, Cardona A, Cook M. Candidate sampling for neuron reconstruction from anisotropic electron microscopy volumes. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 17: 17-24. PMID 25333096  0.92
2014 Parslow A, Cardona A, Bryson-Richardson RJ. Sample drift correction following 4D confocal time-lapse imaging. Journal of Visualized Experiments : Jove. PMID 24747942 DOI: 10.3791/51086  0.92
2014 Funke J, Martel JNP, Gerhard S, Andres B, Cire?an DC, Giusti A, Gambardella LM, Schmidhuber J, Pfister H, Cardona A, Cook M. Candidate sampling for neuron reconstruction from anisotropic electron microscopy volumes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8673: 17-24. DOI: 10.1007/978-3-319-10404-1_3  0.92
2013 Cardona A. Towards semi-automatic reconstruction of neural circuits. Neuroinformatics. 11: 31-3. PMID 23055046 DOI: 10.1007/s12021-012-9166-x  0.92
2012 Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, ... Cardona A, et al. Fiji: an open-source platform for biological-image analysis. Nature Methods. 9: 676-82. PMID 22743772 DOI: 10.1038/nmeth.2019  0.92
2012 Cardona A, Tomancak P. Current challenges in open-source bioimage informatics. Nature Methods. 9: 661-5. PMID 22743770 DOI: 10.1038/nmeth.2082  0.92
2012 Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ. TrakEM2 software for neural circuit reconstruction. Plos One. 7: e38011. PMID 22723842 DOI: 10.1371/journal.pone.0038011  0.92
2012 Saalfeld S, Fetter R, Cardona A, Tomancak P. Elastic volume reconstruction from series of ultra-thin microscopy sections. Nature Methods. 9: 717-20. PMID 22688414 DOI: 10.1038/nmeth.2072  0.92
2012 Funke J, Andres B, Hamprecht FA, Cardona A, Cook M. Efficient automatic 3D-reconstruction of branching neurons from em data Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 1004-1011. DOI: 10.1109/CVPR.2012.6247777  0.92
2011 Sprecher SG, Cardona A, Hartenstein V. The Drosophila larval visual system: high-resolution analysis of a simple visual neuropil. Developmental Biology. 358: 33-43. PMID 21781960 DOI: 10.1016/j.ydbio.2011.07.006  0.92
2010 Cardona A, Saalfeld S, Preibisch S, Schmid B, Cheng A, Pulokas J, Tomancak P, Hartenstein V. An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy. Plos Biology. 8. PMID 20957184 DOI: 10.1371/journal.pbio.1000502  0.92
2010 Bery A, Cardona A, Martinez P, Hartenstein V. Structure of the central nervous system of a juvenile acoel, Symsagittifera roscoffensis. Development Genes and Evolution. 220: 61-76. PMID 20549514 DOI: 10.1007/s00427-010-0328-2  0.92
2010 Saalfeld S, Cardona A, Hartenstein V, Toman?ák P. As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets. Bioinformatics (Oxford, England). 26: i57-63. PMID 20529937 DOI: 10.1093/bioinformatics/btq219  0.92
2010 Cardona A, Saalfeld S, Arganda I, Pereanu W, Schindelin J, Hartenstein V. Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 7538-53. PMID 20519528 DOI: 10.1523/JNEUROSCI.0186-10.2010  0.92
2010 Schmid B, Schindelin J, Cardona A, Longair M, Heisenberg M. A high-level 3D visualization API for Java and ImageJ. Bmc Bioinformatics. 11: 274. PMID 20492697 DOI: 10.1186/1471-2105-11-274  0.92
2009 Cardona A, Saalfeld S, Tomancak P, Hartenstein V. Drosophila brain development: closing the gap between a macroarchitectural and microarchitectural approach. Cold Spring Harbor Symposia On Quantitative Biology. 74: 235-48. PMID 20028843 DOI: 10.1101/sqb.2009.74.037  0.92
2009 Cardona A, Larsen C, Hartenstein V. Neuronal fiber tracts connecting the brain and ventral nerve cord of the early Drosophila larva. The Journal of Comparative Neurology. 515: 427-40. PMID 19459219 DOI: 10.1002/cne.22086  0.92
2009 Saalfeld S, Cardona A, Hartenstein V, Tomancak P. CATMAID: collaborative annotation toolkit for massive amounts of image data. Bioinformatics (Oxford, England). 25: 1984-6. PMID 19376822 DOI: 10.1093/bioinformatics/btp266  0.92
2008 Schröter C, Herrgen L, Cardona A, Brouhard GJ, Feldman B, Oates AC. Dynamics of zebrafish somitogenesis. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 237: 545-53. PMID 18265021 DOI: 10.1002/dvdy.21458  0.92
2008 Hartenstein V, Cardona A, Pereanu W, Younossi-Hartenstein A. Modeling the developing Drosophila brain: Rationale, technique, and application Bioscience. 58: 823-836. DOI: 10.1641/B580910  0.92
2007 Morris J, Cardona A, De Miguel-Bonet Mdel M, Hartenstein V. Neurobiology of the basal platyhelminth Macrostomum lignano: map and digital 3D model of the juvenile brain neuropile. Development Genes and Evolution. 217: 569-84. PMID 17611771 DOI: 10.1007/s00427-007-0166-z  0.92
2006 Cardona A, Hartenstein V, Romero R. Early embryogenesis of planaria: a cryptic larva feeding on maternal resources. Development Genes and Evolution. 216: 667-81. PMID 16932928 DOI: 10.1007/s00427-006-0094-3  0.92
2005 Cardona A, Fernández J, Solana J, Romero R. An in situ hybridization protocol for planarian embryos: monitoring myosin heavy chain gene expression. Development Genes and Evolution. 215: 482-88. PMID 16010545 DOI: 10.1007/s00427-005-0003-1  0.92
2005 Cardona A, Hartenstein V, Romero R. The embryonic development of the triclad Schmidtea polychroa. Development Genes and Evolution. 215: 109-31. PMID 15599763 DOI: 10.1007/s00427-004-0455-8  0.92
2002 Bueno D, Fernàndez-Rodríguez J, Cardona A, Hernàndez-Hernàndez V, Romero R. A novel invertebrate trophic factor related to invertebrate neurotrophins is involved in planarian body regional survival and asexual reproduction. Developmental Biology. 252: 188-201. PMID 12482709 DOI: 10.1006/dbio.2002.0851  0.92
2001 Bueno D, Fernández-Rodríguez J, Cardona A, Hernández V, Romero R. Regeneration of gross molecular body regions in planaria: From molecules to organs International Journal of Developmental Biology. 45: S121-S122.  0.92
2001 Hernández-Hernández V, Fernández J, Cardona A, Romero R, Bueno D. Selective inhibition of gene expression by RNAi in chick embryos in ovo International Journal of Developmental Biology. 45: S99-S100.  0.92
2001 Fernández-Rodríguez J, Cardona A, Hernández V, Romero R, Bueno D. TNEX59, a planarian regional nuclear factor differentially expressed during regeneration International Journal of Developmental Biology. 45: S125-S126.  0.92
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