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Scott A. Lacadie, Ph.D. - Publications

Affiliations: 
Brandeis University, Waltham, MA, United States 
Area:
Molecular Genetics of RNA Processing and Behavior
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11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 McGarvey AC, Kopp W, Vučićević D, Mattonet K, Kempfer R, Hirsekorn A, Bilić I, Gil M, Trinks A, Merks AM, Panáková D, Pombo A, Akalin A, Junker JP, Stainier DYR, ... ... Lacadie SA, et al. Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos. Cell Genomics. 2: 100083. PMID 36777038 DOI: 10.1016/j.xgen.2021.100083  0.341
2018 Ibrahim MM, Karabacak A, Glahs A, Kolundzic E, Hirsekorn A, Carda A, Tursun B, Zinzen RP, Lacadie SA, Ohler U. Determinants of promoter and enhancer transcription directionality in metazoans. Nature Communications. 9: 4472. PMID 30367057 DOI: 10.1038/S41467-018-06962-Z  0.473
2018 Kolundzic E, Ofenbauer A, Bulut SI, Uyar B, Baytek G, Sommermeier A, Seelk S, He M, Hirsekorn A, Vucicevic D, Akalin A, Diecke S, Lacadie SA, Tursun B. FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells. Developmental Cell. PMID 30078731 DOI: 10.1016/J.Devcel.2018.07.006  0.473
2016 Lacadie SA, Ibrahim MM, Gokhale SA, Ohler U. Divergent Transcription and Epigenetic Directionality of Human Promoters. The Febs Journal. PMID 27115538 DOI: 10.1111/Febs.13747  0.554
2015 Duttke SH, Lacadie SA, Ibrahim MM, Glass CK, Corcoran DL, Benner C, Heinz S, Kadonaga JT, Ohler U. Human promoters are intrinsically directional. Molecular Cell. 57: 674-84. PMID 25639469 DOI: 10.1016/J.Molcel.2014.12.029  0.586
2015 Ibrahim MM, Lacadie SA, Ohler U. JAMM: a peak finder for joint analysis of NGS replicates. Bioinformatics (Oxford, England). 31: 48-55. PMID 25223640 DOI: 10.1093/Bioinformatics/Btu568  0.309
2012 McKinney-Freeman S, Cahan P, Li H, Lacadie SA, Huang HT, Curran M, Loewer S, Naveiras O, Kathrein KL, Konantz M, Langdon EM, Lengerke C, Zon LI, Collins JJ, Daley GQ. The transcriptional landscape of hematopoietic stem cell ontogeny. Cell Stem Cell. 11: 701-14. PMID 23122293 DOI: 10.1016/J.Stem.2012.07.018  0.367
2006 Tardiff DF, Lacadie SA, Rosbash M. A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional. Molecular Cell. 24: 917-29. PMID 17189193 DOI: 10.1016/J.Molcel.2006.12.002  0.626
2006 Lacadie SA, Tardiff DF, Kadener S, Rosbash M. In vivo commitment to yeast cotranscriptional splicing is sensitive to transcription elongation mutants. Genes & Development. 20: 2055-66. PMID 16882983 DOI: 10.1101/Gad.1434706  0.527
2005 Lacadie SA, Rosbash M. Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5'ss base pairing in yeast. Molecular Cell. 19: 65-75. PMID 15989965 DOI: 10.1016/J.Molcel.2005.05.006  0.576
2004 Abruzzi KC, Lacadie S, Rosbash M. Biochemical analysis of TREX complex recruitment to intronless and intron-containing yeast genes. The Embo Journal. 23: 2620-31. PMID 15192704 DOI: 10.1038/Sj.Emboj.7600261  0.643
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