Harrison W. Gabel, Ph.D. - Related publications

Harvard University, Cambridge, MA, United States 
miRNA, C. elegans development and lifespan
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Woods BJ, Van Vactor D. miRNA: local guardians of presynaptic function in plasticity and disease. Rna Biology. 1-11. PMID 33586621 DOI: 10.1080/15476286.2020.1871214   
2021 Dachet F, Brown JB, Valyi-Nagy T, Narayan KD, Serafini A, Boley N, Gingeras TR, Celniker SE, Mohapatra G, Loeb JA. Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain. Scientific Reports. 11: 6078. PMID 33758256 DOI: 10.1038/s41598-021-85801-6   
2021 Nuñez JK, Chen J, Pommier GC, Cogan JZ, Replogle JM, Adriaens C, Ramadoss GN, Shi Q, Hung KL, Samelson AJ, Pogson AN, Kim JYS, Chung A, Leonetti MD, Chang HY, et al. Genome-wide programmable transcriptional memory by CRISPR-based epigenome editing. Cell. PMID 33838111 DOI: 10.1016/j.cell.2021.03.025   
2021 Kim D, Hong SH, Han G, Cho C. Analysis of mouse male germ cell-specific or -predominant Tex13 family genes encoding proteins with transcriptional repressor activity. Molecular Biology Reports. PMID 33811575 DOI: 10.1007/s11033-021-06265-5   
2021 Wang JC, Ramaswami G, Geschwind DH. Gene co-expression network analysis in human spinal cord highlights mechanisms underlying amyotrophic lateral sclerosis susceptibility. Scientific Reports. 11: 5748. PMID 33707641 DOI: 10.1038/s41598-021-85061-4   
2021 Lee JY, Song J, LeBlanc L, Davis I, Kim J, Beck S. Conserved dual-mode gene regulation programs in higher eukaryotes. Nucleic Acids Research. PMID 33621342 DOI: 10.1093/nar/gkab108   
2021 Kwik M, Hainzl S, Oppelt J, Tichy B, Koller U, Bernardinelli E, Steiner M, Zara G, Nofziger C, Weis S, Paulmichl M, Dossena S, Patsch W, Soyal SM. Selective Activation of CNS and Reference Promoters Is Associated with Distinct Gene Programs Relevant for Neurodegenerative Diseases. International Journal of Molecular Sciences. 22. PMID 33804860 DOI: 10.3390/ijms22073296   
2021 Wu B, Jiang X, Huang Y, Ying X, Zhang H, Liu B, Li Z, Qi D, Ji W, Cai X. Integrated Analysis of mRNA-mA-protein Profiles Reveals Novel Insights into the Mechanisms for Cadmium-induced Urothelial Transformation. Biomarkers : Biochemical Indicators of Exposure, Response, and Susceptibility to Chemicals. 1-23. PMID 33830842 DOI: 10.1080/1354750X.2021.1913513   
2021 Mark KG, Rape M. Ubiquitin-dependent regulation of transcription in development and disease. Embo Reports. e51078. PMID 33779035 DOI: 10.15252/embr.202051078   
2021 Kitazawa T, Machlab D, Joshi O, Maiorano N, Kohler H, Ducret S, Kessler S, Gezelius H, Soneson C, Papasaikas P, López-Bendito G, Stadler MB, Rijli FM. A unique bipartite Polycomb signature regulates stimulus-response transcription during development. Nature Genetics. PMID 33603234 DOI: 10.1038/s41588-021-00789-z   
2021 He L, Jones J, He W, Bjork BC, Wen J, Dai Q. PRDM16 regulates a temporal transcriptional program to promote progression of cortical neural progenitors. Development (Cambridge, England). PMID 33597191 DOI: 10.1242/dev.194670   
2021 Hansen J, von Melchner H, Wurst W. Mutant non-coding RNA resource in mouse embryonic stem cells. Disease Models & Mechanisms. 14. PMID 33729986 DOI: 10.1242/dmm.047803   
2021 Mehta SJK, Joshi PA, Mishra RK. Molecular and Phenotypic Characterization Following RNAi Mediated Knockdown in . Bio-Protocol. 11: e3924. PMID 33732811 DOI: 10.21769/BioProtoc.3924   
2021 Gong M, Zhang X, Wang Y, Mao G, Ou Y, Wei C, Hu X, Xiang S. DDX21 interacts with nuclear AGO2 and regulates the alternative splicing of SMN2. Bioscience, Biotechnology, and Biochemistry. 85: 272-279. PMID 33604619 DOI: 10.1093/bbb/zbaa029   
2021 Zhong RQ, Tian H, Gao XJ. [Epigenetic regulation in tooth development]. Zhonghua Kou Qiang Yi Xue Za Zhi = Zhonghua Kouqiang Yixue Zazhi = Chinese Journal of Stomatology. 56: 288-293. PMID 33663161 DOI: 10.3760/cma.j.cn112144-20200518-00283   
2021 Goszczynski DE, Halstead MM, Islas-Trejo AD, Zhou H, Ross PJ. Transcription initiation mapping in 31 bovine tissues reveals complex promoter activity, pervasive transcription, and tissue-specific promoter usage. Genome Research. 31: 732-744. PMID 33722934 DOI: 10.1101/gr.267336.120   
2021 Duan A, Wang H, Zhu Y, Wang Q, Zhang J, Hou Q, Xing Y, Shi J, Hou J, Qin Z, Chen Z, Liu Z, Yang J. Chromatin architecture reveals cell type-specific target genes for kidney disease risk variants. Bmc Biology. 19: 38. PMID 33627123 DOI: 10.1186/s12915-021-00977-7   
2021 He K, Zhang J, Liu J, Cui Y, Liu LG, Ye S, Ban Q, Pan R, Liu D. Functional genomics study of protein inhibitor of activated STAT1 in mouse hippocampal neuronal cells revealed by RNA sequencing. Aging. 13. PMID 33759814 DOI: 10.18632/aging.202749   
2021 Zhao W, Liu Y, Li L, Meng H, Yang Y, Dong Z, Wang L, Wu G. Genome-Wide Identification and Characterization of bHLH Transcription Factors Related to Anthocyanin Biosynthesis in Red Walnut ( L.). Frontiers in Genetics. 12: 632509. PMID 33719341 DOI: 10.3389/fgene.2021.632509   
2021 Crespo NE, Torres-Bracero A, Renta JY, Desnick RJ, Cadilla CL. Expression Profiling Identifies TWIST2 Target Genes in Setleis Syndrome Patient Fibroblast and Lymphoblast Cells. International Journal of Environmental Research and Public Health. 18. PMID 33669496 DOI: 10.3390/ijerph18041997   
2021 Tang D, Zhang Z, Zboril E, Wetzel MD, Xu X, Zhang W, Chen L, Liu Z. Pontin Functions as A Transcriptional Co-activator for Retinoic Acid-induced HOX Gene Expression. Journal of Molecular Biology. 166928. PMID 33713676 DOI: 10.1016/j.jmb.2021.166928   
2021 Meng F, Zhao H, Zhu B, Zhang T, Yang M, Li Y, Han Y, Jiang J. Genomic Editing of Intronic Enhancers Unveils Their Role in Fine-Tuning Tissue-Specific Gene Expression in Arabidopsis thaliana. The Plant Cell. PMID 33764459 DOI: 10.1093/plcell/koab093   
2021 Son SH, Jang SY, Park HS. Functions of PUF family RNA-binding proteins in . Journal of Microbiology and Biotechnology. PMID 33746193 DOI: 10.4014/jmb.2101.01011   
2021 Tresenrider A, Morse K, Jorgensen V, Chia M, Liao H, Jacobus van Werven F, Ünal E. Integrated genomic analysis reveals key features of long undecoded transcript isoform-based gene repression. Molecular Cell. PMID 33826921 DOI: 10.1016/j.molcel.2021.03.013   
2021 Xiong D, Yu L, Shan H, Tian C. CcPmk1 is a regulator of pathogenicity in Cytospora chrysosperma and can be used as a potential target for disease control. Molecular Plant Pathology. PMID 33835616 DOI: 10.1111/mpp.13059   
2021 Ma M, Welch RD, Garza AG. The σ system directly regulates bacterial natural product genes. Scientific Reports. 11: 4771. PMID 33637792 DOI: 10.1038/s41598-021-84057-4   
2021 Abbas F, Ke Y, Zhou Y, Yu Y, Waseem M, Ashraf U, Wang C, Wang X, Li X, Yue Y, Yu R, Fan Y. Genome-Wide Analysis Reveals the Potential Role of MYB Transcription Factors in Floral Scent Formation in . Frontiers in Plant Science. 12: 623742. PMID 33719296 DOI: 10.3389/fpls.2021.623742   
2021 Smita S, Robben M, Deuja A, Accerbi M, Green PJ, Subramanian S, Fennell A. Integrative Analysis of Gene Expression and miRNAs Reveal Biological Pathways Associated with Bud Paradormancy and Endodormancy in Grapevine. Plants (Basel, Switzerland). 10. PMID 33807184 DOI: 10.3390/plants10040669   
2021 Smita S, Robben M, Deuja A, Accerbi M, Green PJ, Subramanian S, Fennell A. Integrative Analysis of Gene Expression and miRNAs Reveal Biological Pathways Associated with Bud Paradormancy and Endodormancy in Grapevine. Plants (Basel, Switzerland). 10. PMID 33807184 DOI: 10.3390/plants10040669   
2021 Adhikari S, Erill I, Curtis PD. Transcriptional rewiring of the GcrA/CcrM bacterial epigenetic regulatory system in closely related bacteria. Plos Genetics. 17: e1009433. PMID 33705385 DOI: 10.1371/journal.pgen.1009433   
2021 Liu S, Punthambaker S, Iyer EPR, Ferrante T, Goodwin D, Fürth D, Pawlowski AC, Jindal K, Tam JM, Mifflin L, Alon S, Sinha A, Wassie AT, Chen F, Cheng A, et al. Barcoded oligonucleotides ligated on RNA amplified for multiplexed and parallel in situ analyses. Nucleic Acids Research. PMID 33693773 DOI: 10.1093/nar/gkab120   
2021 Ma L, Gao Z, Wu J, Zhong B, Xie Y, Huang W, Lin Y. Co-condensation between transcription factor and coactivator p300 modulates transcriptional bursting kinetics. Molecular Cell. PMID 33651988 DOI: 10.1016/j.molcel.2021.01.031   
2021 Milne L, Bayer M, Rapazote-Flores P, Mayer CD, Waugh R, Simpson CG. EORNA, a barley gene and transcript abundance database. Scientific Data. 8: 90. PMID 33767193 DOI: 10.1038/s41597-021-00872-4   
2021 Sun C, Zhang C, Wang X, Zhao X, Chen F, Zhang W, Hu M, Fu S, Yi B, Zhang J. Genome-Wide Identification and Characterization of the IGT Gene Family in Allotetraploid Rapeseed ( L.). Dna and Cell Biology. PMID 33600242 DOI: 10.1089/dna.2020.6227   
2021 Freewoman JM, Snape R, Cui F. Temporal gene regulation by p53 is associated with the rotational setting of its binding sites in nucleosomes. Cell Cycle (Georgetown, Tex.). 1-16. PMID 33764853 DOI: 10.1080/15384101.2021.1904554   
2021 Hansen JY, Markello RD, Vogel JW, Seidlitz J, Bzdok D, Misic B. Mapping gene transcription and neurocognition across human neocortex. Nature Human Behaviour. PMID 33767429 DOI: 10.1038/s41562-021-01082-z   
2021 Garcia-Lozano M, Natarajan P, Levi A, Katam R, Lopez-Ortiz C, Nimmakayala P, Reddy UK. Altered chromatin conformation and transcriptional regulation in watermelon following genome doubling. The Plant Journal : For Cell and Molecular Biology. PMID 33788333 DOI: 10.1111/tpj.15256   
2021 Zhou Y, Zhang X, Xiong S, Zeng X, Zhang X. Predicted gene 31453 (Gm31453) and the gene encoding carboxypeptidase A5 (Cpa5) are not essential for spermatogenesis and male fertility in the mouse. Reproduction, Fertility, and Development. PMID 33745502 DOI: 10.1071/RD20284   
2021 Wu Y, Wang T, Zhao Z, Liu S, Shen C, Li H, Liu M, Zheng B, Yu J, Huang X. Retinoic Acid Induced Protein 14 () is dispensable for mouse spermatogenesis. Peerj. 9: e10847. PMID 33643708 DOI: 10.7717/peerj.10847   
2021 Gordon MR, Zhu J, Qu V, Li R. A case of convergent-gene interference in the budding yeast knockout library causing chromosome instability. G3 (Bethesda, Md.). PMID 33724427 DOI: 10.1093/g3journal/jkab084   
2021 Poon GMK. The Non-continuum Nature of Eukaryotic Transcriptional Regulation. Advances in Experimental Medicine and Biology. PMID 33616894 DOI: 10.1007/5584_2021_618   
2021 Gandhi S, Li Y, Tang W, Christensen JB, Urrutia HA, Vieceli FM, Piacentino ML, Bronner ME. A single-plasmid approach for genome editing coupled with long-term lineage analysis in chick embryos. Development (Cambridge, England). PMID 33688075 DOI: 10.1242/dev.193565   
2021 Zhang X, Lv S, Luo Z, Hu Y, Peng X, Lv J, Zhao S, Feng J, Huang G, Wan QL, Liu J, Huang H, Luan B, Wang D, Zhao X, et al. MiniCAFE, a CRISPR/Cas9-based compact and potent transcriptional activator, elicits gene expression in vivo. Nucleic Acids Research. PMID 33751124 DOI: 10.1093/nar/gkab174   
2021 Zhang L, Zhao J, Bi H, Yang X, Zhang Z, Su Y, Li Z, Zhang L, Sanderson BJ, Liu J, Ma T. Bioinformatic analysis of chromatin organization and biased expression of duplicated genes between two poplars with a common whole-genome duplication. Horticulture Research. 8: 62. PMID 33750794 DOI: 10.1038/s41438-021-00494-2   
2021 Bueno D, Pedrolli DB, Martins PMM, Bocchini DA, Moraes KCM, Facincani AP, Ferro JA, Varani AM, Pena MM, Ferreira H. Riboswitch theo/ as a Transcription Regulation Tool for subsp. . Microorganisms. 9. PMID 33562149 DOI: 10.3390/microorganisms9020329   
2021 Christensen KA, Le Luyer J, Chan MTT, Rondeau EB, Koop BF, Bernatchez L, Devlin RH. Assessing the effects of genotype-by-environment interaction on epigenetic, transcriptomic, and phenotypic response in a Pacific salmon. G3 (Bethesda, Md.). 11. PMID 33712817 DOI: 10.1093/g3journal/jkab021   
2021 Chowdhury F, Wang L, Al-Raqad M, Amor DJ, Baxová A, Bendová Š, Biamino E, Brusco A, Caluseriu O, Cox NJ, Froukh T, Gunay-Aygun M, Hančárová M, Haynes D, Heide S, et al. Haploinsufficiency of PRR12 causes a spectrum of neurodevelopmental, eye, and multisystem abnormalities. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 33824499 DOI: 10.1038/s41436-021-01129-6   
2021 Casas-Tintó S, Ferrús A. The haplolethality paradox of the wupA gene in Drosophila. Plos Genetics. 17: e1009108. PMID 33739971 DOI: 10.1371/journal.pgen.1009108   
2021 Liu H, Xu W, Bruno VM, Phan QT, Solis NV, Woolford CA, Ehrlich RL, Shetty AC, McCraken C, Lin J, Bromley MJ, Mitchell AP, Filler SG. Determining Aspergillus fumigatus transcription factor expression and function during invasion of the mammalian lung. Plos Pathogens. 17: e1009235. PMID 33780518 DOI: 10.1371/journal.ppat.1009235   
2021 Liu H, Xu W, Bruno VM, Phan QT, Solis NV, Woolford CA, Ehrlich RL, Shetty AC, McCraken C, Lin J, Bromley MJ, Mitchell AP, Filler SG. Determining Aspergillus fumigatus transcription factor expression and function during invasion of the mammalian lung. Plos Pathogens. 17: e1009235. PMID 33780518 DOI: 10.1371/journal.ppat.1009235