Year |
Citation |
Score |
2020 |
Cortés-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS, Park PJ. Publisher Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nature Genetics. PMID 32404988 DOI: 10.1038/S41588-020-0634-1 |
0.344 |
|
2020 |
Cui Y, Chen H, Xi R, Cui H, Zhao Y, Xu E, Yan T, Lu X, Huang F, Kong P, Li Y, Zhu X, Wang J, Zhu W, Wang J, et al. Whole-genome sequencing of 508 patients identifies key molecular features associated with poor prognosis in esophageal squamous cell carcinoma. Cell Research. PMID 32398863 DOI: 10.1038/S41422-020-0333-6 |
0.344 |
|
2020 |
Wu L, Wang H, Xia Y, Xi R. CNV-BAC: Copy Number Variation Detection in Bacterial Circular Genome. Bioinformatics (Oxford, England). PMID 32219377 DOI: 10.1093/Bioinformatics/Btaa208 |
0.346 |
|
2020 |
Cortés-Ciriano I, Lee JJ, Xi R, Jain D, Jung YL, Yang L, Gordenin D, Klimczak LJ, Zhang CZ, Pellman DS, Park PJ. Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing. Nature Genetics. PMID 32025003 DOI: 10.1038/S41588-019-0576-7 |
0.382 |
|
2020 |
Sieverling L, Hong C, Koser SD, Ginsbach P, Kleinheinz K, Hutter B, Braun DM, Cortés-Ciriano I, Xi R, Kabbe R, Park PJ, Eils R, Schlesner M, Brors B, et al. Genomic footprints of activated telomere maintenance mechanisms in cancer. Nature Communications. 11: 733. PMID 32024817 DOI: 10.1038/S41467-019-13824-9 |
0.378 |
|
2019 |
Zhang Y, Yang L, Kucherlapati M, Hadjipanayis A, Pantazi A, Bristow CA, Lee EA, Mahadeshwar HS, Tang J, Zhang J, Seth S, Lee S, Ren X, Song X, Sun H, ... ... Xi R, et al. Global impact of somatic structural variation on the DNA methylome of human cancers. Genome Biology. 20: 209. PMID 31610796 DOI: 10.1186/S13059-019-1818-9 |
0.336 |
|
2019 |
Xia Y, Liu Y, Deng M, Xi R. Detecting virus integration sites based on multiple related sequencing data by VirTect. Bmc Medical Genomics. 12: 19. PMID 30704462 DOI: 10.1186/S12920-018-0461-8 |
0.302 |
|
2018 |
Zhang Y, Yang L, Kucherlapati M, Chen F, Hadjipanayis A, Pantazi A, Bristow CA, Lee EA, Mahadeshwar HS, Tang J, Zhang J, Seth S, Lee S, Ren X, Song X, ... ... Xi R, et al. A Pan-Cancer Compendium of Genes Deregulated by Somatic Genomic Rearrangement across More Than 1,400 Cases. Cell Reports. 24: 515-527. PMID 29996110 DOI: 10.1016/J.Celrep.2018.06.025 |
0.364 |
|
2018 |
Duan M, Hao J, Cui S, Worthley DL, Zhang S, Wang Z, Shi J, Liu L, Wang X, Ke A, Cao Y, Xi R, Zhang X, Zhou J, Fan J, et al. Diverse modes of clonal evolution in HBV-related hepatocellular carcinoma revealed by single-cell genome sequencing. Cell Research. PMID 29327728 DOI: 10.1038/Cr.2018.11 |
0.333 |
|
2017 |
Xia Y, Liu Y, Deng M, Xi R. SVmine improves structural variation detection by integrative mining of predictions from multiple algorithms. Bioinformatics (Oxford, England). PMID 29036467 DOI: 10.1093/Bioinformatics/Btx455 |
0.327 |
|
2017 |
Chang J, Tan W, Ling Z, Xi R, Shao M, Chen M, Luo Y, Zhao Y, Liu Y, Huang X, Xia Y, Hu J, Parker JS, Marron D, Cui Q, et al. Genomic analysis of oesophageal squamous-cell carcinoma identifies alcohol drinking-related mutation signature and genomic alterations. Nature Communications. 8: 15290. PMID 28548104 DOI: 10.1038/Ncomms15290 |
0.352 |
|
2017 |
Zhang Y, Kwok-Shing Ng P, Kucherlapati M, Chen F, Liu Y, Tsang YH, de Velasco G, Jeong KJ, Akbani R, Hadjipanayis A, Pantazi A, Bristow CA, Lee E, Mahadeshwar HS, Tang J, ... ... Xi R, et al. A Pan-Cancer Proteogenomic Atlas of PI3K/AKT/mTOR Pathway Alterations. Cancer Cell. PMID 28528867 DOI: 10.1016/J.Ccell.2017.04.013 |
0.32 |
|
2017 |
Xia Y, Liu Y, Deng M, Xi R. Pysim-sv: a package for simulating structural variation data with GC-biases. Bmc Bioinformatics. 18: 53. PMID 28361688 DOI: 10.1186/S12859-017-1464-8 |
0.326 |
|
2016 |
Ping Z, Xia Y, Shen T, Parekh V, Siegal GP, Eltoum IE, He J, Chen D, Deng M, Xi R, Shen D. A microscopic landscape of the invasive breast cancer genome. Scientific Reports. 6: 27545. PMID 27283966 DOI: 10.1038/Srep27545 |
0.335 |
|
2016 |
Xi R, Lee S, Xia Y, Kim TM, Park PJ. Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants. Nucleic Acids Research. PMID 27260798 DOI: 10.1093/Nar/Gkw491 |
0.421 |
|
2016 |
Xi R, Lin N. Direct regression modelling of high-order moments in big data Statistics and Its Interface. 9: 445-452. DOI: 10.4310/Sii.2016.V9.N4.A4 |
0.407 |
|
2015 |
Shi JY, Xing Q, Duan M, Wang ZC, Yang LX, Zhao YJ, Wang XY, Liu Y, Deng M, Ding ZB, Ke AW, Zhou J, Fan J, Cao Y, Wang J, ... Xi R, et al. Inferring the progression of multifocal liver cancer from spatial and temporal genomic heterogeneity. Oncotarget. PMID 26672766 DOI: 10.18632/Oncotarget.6558 |
0.309 |
|
2015 |
Nam JY, Kim NK, Kim SC, Joung JG, Xi R, Lee S, Park PJ, Park WY. Evaluation of somatic copy number estimation tools for whole-exome sequencing data. Briefings in Bioinformatics. PMID 26210357 DOI: 10.1093/Bib/Bbv055 |
0.407 |
|
2015 |
Gao Q, Wang Z, Xi R, Fan J. Abstract 4814: Inferring liver cancer evolution from spatial and temporal genomic heterogeneity Cancer Research. 75: 4814-4814. DOI: 10.1158/1538-7445.Am2015-4814 |
0.319 |
|
2014 |
Yang L, Luquette LJ, Gehlenborg N, Xi R, Haseley PS, Hsieh CH, Zhang C, Ren X, Protopopov A, Chin L, Kucherlapati R, Lee C, Park PJ. Erratum: Diverse mechanisms of somatic structural variations in human cancer genomes (Cell (2013) 153 (919-929)) Cell. 157. DOI: 10.1016/J.Cell.2014.05.020 |
0.347 |
|
2013 |
Yang L, Luquette LJ, Gehlenborg N, Xi R, Haseley PS, Hsieh CH, Zhang C, Ren X, Protopopov A, Chin L, Kucherlapati R, Lee C, Park PJ. Diverse mechanisms of somatic structural variations in human cancer genomes. Cell. 153: 919-29. PMID 23663786 DOI: 10.1016/J.Cell.2013.04.010 |
0.39 |
|
2013 |
Kim TM, Xi R, Luquette LJ, Park RW, Johnson MD, Park PJ. Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes. Genome Research. 23: 217-27. PMID 23132910 DOI: 10.1101/Gr.140301.112 |
0.387 |
|
2012 |
Xi R, Lee S, Park PJ. A survey of copy-number variation detection tools based on high-throughput sequencing data. Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. Unit7.19. PMID 23074071 DOI: 10.1002/0471142905.Hg0719S75 |
0.363 |
|
2012 |
Hammerman PS, Voet D, Lawrence MS, Jing R, Cibulskis K, Sivachenko A, Stojanov P, McKenna A, Lander ES, Gabriel S, Getz G, Imielinski M, Helman E, Hernandez B, Pho NH, ... ... Xi R, et al. Comprehensive genomic characterization of squamous cell lung cancers Nature. 489: 519-525. PMID 22960745 DOI: 10.1038/Nature11404 |
0.35 |
|
2012 |
Xi R, Lin N, Chen Y, Kim Y. Compression and aggregation of Bayesian estimates for data intensive computing Knowledge and Information Systems. 33: 191-212. DOI: 10.1007/S10115-011-0459-4 |
0.444 |
|
2011 |
Xi R, Hadjipanayis AG, Luquette LJ, Kim TM, Lee E, Zhang J, Johnson MD, Muzny DM, Wheeler DA, Gibbs RA, Kucherlapati R, Park PJ. Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion. Proceedings of the National Academy of Sciences of the United States of America. 108: E1128-36. PMID 22065754 DOI: 10.1073/Pnas.1110574108 |
0.394 |
|
2011 |
Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, ... Xi R, et al. Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature. 471: 480-5. PMID 21179089 DOI: 10.1038/Nature09725 |
0.31 |
|
2011 |
Lin N, Xi R. Aggregated estimating equation estimation Statistics and Its Interface. 4: 73-83. DOI: 10.4310/Sii.2011.V4.N1.A8 |
0.426 |
|
2010 |
Xi R, Kim TM, Park PJ. Detecting structural variations in the human genome using next generation sequencing. Briefings in Functional Genomics. 9: 405-15. PMID 21216738 DOI: 10.1093/Bfgp/Elq025 |
0.349 |
|
2010 |
Kim TM, Luquette LJ, Xi R, Park PJ. rSW-seq: algorithm for detection of copy number alterations in deep sequencing data. Bmc Bioinformatics. 11: 432. PMID 20718989 DOI: 10.1186/1471-2105-11-432 |
0.396 |
|
2010 |
Li Q, Xi R, Lin N. Bayesian regularized quantile regression Bayesian Analysis. 5: 533-556. DOI: 10.1214/10-Ba521 |
0.423 |
|
2010 |
Xi R, Luquette J, Hadjipanayis A, Kim T, Park PJ. BIC-seq: a fast algorithm for detection of copy number alterations based on high-throughput sequencing data Genome Biology. 11: 1-1. DOI: 10.1186/Gb-2010-11-S1-O10 |
0.393 |
|
2010 |
Lin N, Xi R. Fast surrogates of U-statistics Computational Statistics and Data Analysis. 54: 16-24. DOI: 10.1016/J.Csda.2009.08.009 |
0.41 |
|
2009 |
Xi R, Lin N, Chen Y. Compression and aggregation for logistic regression analysis in data cubes Ieee Transactions On Knowledge and Data Engineering. 21: 479-492. DOI: 10.1109/Tkde.2008.186 |
0.447 |
|
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