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Shaoke Lou, Ph.D. - Publications

Affiliations: 
2012 Computer Science and Engineering The Chinese University of Hong Kong, Hong Kong, Hong Kong 
Area:
1. Drug resistant of pathogenic bacteria. 2. Molecular virology of HIV and HBV.
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15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhang J, Lee D, Dhiman V, Jiang P, Xu J, McGillivray P, Yang H, Liu J, Meyerson W, Clarke D, Gu M, Li S, Lou S, Xu J, Lochovsky L, et al. An integrative ENCODE resource for cancer genomics. Nature Communications. 11: 3696. PMID 32728046 DOI: 10.1038/S41467-020-14743-W  0.363
2020 Zhang J, Liu J, Lee D, Feng JJ, Lochovsky L, Lou S, Rutenberg-Schoenberg M, Gerstein M. RADAR: annotation and prioritization of variants in the post-transcriptional regulome of RNA-binding proteins. Genome Biology. 21: 151. PMID 32727537 DOI: 10.1186/S13059-020-01979-4  0.33
2020 Spakowicz D, Lou S, Barron B, Gomez JL, Li T, Liu Q, Grant N, Yan X, Hoyd R, Weinstock G, Chupp GL, Gerstein M. Approaches for integrating heterogeneous RNA-seq data reveal cross-talk between microbes and genes in asthmatic patients. Genome Biology. 21: 150. PMID 32571363 DOI: 10.1186/S13059-020-02033-Z  0.312
2019 Lou S, Cotter KA, Li T, Liang J, Mohsen H, Liu J, Zhang J, Cohen S, Xu J, Yu H, Rubin MA, Gerstein M. GRAM: A GeneRAlized Model to predict the molecular effect of a non-coding variant in a cell-type specific manner. Plos Genetics. 15: e1007860. PMID 31469829 DOI: 10.1371/Journal.Pgen.1007860  0.354
2018 Wang D, Liu S, Warrell J, Won H, Shi X, Navarro FCP, Clarke D, Gu M, Emani P, Yang YT, Xu M, Gandal MJ, Lou S, Zhang J, Park JJ, et al. Comprehensive functional genomic resource and integrative model for the human brain. Science (New York, N.Y.). 362. PMID 30545857 DOI: 10.1126/Science.Aat8464  0.312
2017 Yan KK, Lou S, Gerstein M. MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions. Plos Computational Biology. 13: e1005647. PMID 28742097 DOI: 10.1371/Journal.Pcbi.1005647  0.307
2014 Fu Y, Liu Z, Lou S, Bedford J, Mu XJ, Yip KY, Khurana E, Gerstein M. FunSeq2: a framework for prioritizing noncoding regulatory variants in cancer. Genome Biology. 15: 480. PMID 25273974 DOI: 10.1186/S13059-014-0480-5  0.329
2014 Lou S, Lee HM, Qin H, Li JW, Gao Z, Liu X, Chan LL, Kl Lam V, So WY, Wang Y, Lok S, Wang J, Ma RC, Tsui SK, Chan JC, et al. Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation. Genome Biology. 15: 408. PMID 25074712 DOI: 10.1186/S13059-014-0408-0  0.499
2011 Lou SK, Li JW, Qin H, Yim AK, Lo LY, Ni B, Leung KS, Tsui SK, Chan TF. Detection of splicing events and multiread locations from RNA-seq data based on a geometric-tail (GT) distribution of intron length. Bmc Bioinformatics. 12: S2. PMID 21988959 DOI: 10.1186/1471-2105-12-S5-S2  0.519
2011 Li S, Lou S, Lei BU, Chan TF, Kwan YW, Chan SW, Leung GP, Tsui SK, Lee SM. Transcriptional profiling of angiogenesis activities of calycosin in zebrafish. Molecular Biosystems. 7: 3112-21. PMID 21909574 DOI: 10.1039/C1Mb05206C  0.481
2011 Li ZH, Alex D, Siu SO, Chu IK, Renn J, Winkler C, Lou S, Tsui SK, Zhao HY, Yan WR, Mahady GB, Li GH, Kwan YW, Wang YT, Lee SM. Combined in vivo imaging and omics approaches reveal metabolism of icaritin and its glycosides in zebrafish larvae. Molecular Biosystems. 7: 2128-38. PMID 21445457 DOI: 10.1039/C1Mb00001B  0.457
2011 Lou SK, Ni B, Lo LY, Tsui SK, Chan TF, Leung KS. ABMapper: a suffix array-based tool for multi-location searching and splice-junction mapping. Bioinformatics (Oxford, England). 27: 421-2. PMID 21169377 DOI: 10.1093/Bioinformatics/Btq656  0.502
2010 Lou SK, Wong KL, Li M, But PP, Tsui SK, Shaw PC. An integrated web medicinal materials DNA database: MMDBD (Medicinal Materials DNA Barcode Database). Bmc Genomics. 11: 402. PMID 20576098 DOI: 10.1186/1471-2164-11-402  0.465
2006 Dai JM, Sun DC, Lin RX, Yang J, Lou S, Wang SQ. Microarray analysis of differentially expressed genes in mouse bone marrow tissues after ionizing radiation. International Journal of Radiation Biology. 82: 511-21. PMID 16882623 DOI: 10.1080/09553000600857389  0.3
2006 Bo X, Lou S, Sun D, Yang J, Wang S. AOBase: a database for antisense oligonucleotides selection and design. Nucleic Acids Research. 34: D664-7. PMID 16381954 DOI: 10.1093/Nar/Gkj065  0.334
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