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Josee Dostie, Ph.D. - Publications

Affiliations: 
2000 McGill University, Montreal, QC, Canada 
Area:
translational control
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52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Wang XQD, Cameron CJF, Segal D, Paquette D, Blanchette M, Dostie J. Profiling Chromatin Landscape at High Resolution and Throughput with 2C-ChIP. Methods in Molecular Biology (Clifton, N.J.). 2157: 127-157. PMID 32820402 DOI: 10.1007/978-1-0716-0664-3_8  0.378
2020 Ramilowski JA, Yip CW, Agrawal S, Chang JC, Ciani Y, Kulakovskiy IV, Mendez M, Ooi JLC, Ouyang JF, Parkinson N, Petri A, Roos L, Severin J, Yasuzawa K, Abugessaisa I, ... ... Dostie J, et al. Functional annotation of human long noncoding RNAs via molecular phenotyping. Genome Research. PMID 32718982 DOI: 10.1101/Gr.254219.119  0.367
2020 Cameron CJF, Wang XQD, Dostie J, Blanchette M. LAMPS: an analysis pipeline for sequence-specific ligation-mediated amplification reads. Bmc Research Notes. 13: 273. PMID 32493406 DOI: 10.1186/S13104-020-05106-1  0.316
2020 Cameron CJ, Dostie J, Blanchette M. HIFI: estimating DNA-DNA interaction frequency from Hi-C data at restriction-fragment resolution. Genome Biology. 21: 11. PMID 31937349 DOI: 10.1186/S13059-019-1913-Y  0.334
2019 Gentile C, Berlivet S, Mayran A, Paquette D, Guerard-Millet F, Bajon E, Dostie J, Kmita M. PRC2-Associated Chromatin Contacts in the Developing Limb Reveal a Possible Mechanism for the Atypical Role of PRC2 in HoxA Gene Expression. Developmental Cell. PMID 31204170 DOI: 10.1016/J.Devcel.2019.05.021  0.375
2019 Wang XQD, Cameron CJF, Paquette D, Segal D, Warsaba R, Blanchette M, Dostie J. 2C-ChIP: measuring chromatin immunoprecipitation signal from defined genomic regions with deep sequencing. Bmc Genomics. 20: 162. PMID 30819105 DOI: 10.1186/S12864-019-5532-5  0.387
2018 Moisan S, Levon S, Cornec-Le Gall E, Le Meur Y, Audrézet MP, Dostie J, Férec C. Novel long-range regulatory mechanisms controlling PKD2 gene expression. Bmc Genomics. 19: 515. PMID 29986647 DOI: 10.1186/S12864-018-4892-6  0.328
2017 Beagrie RA, Scialdone A, Schueler M, Kraemer DC, Chotalia M, Xie SQ, Barbieri M, de Santiago I, Lavitas LM, Branco MR, Fraser J, Dostie J, Game L, Dillon N, Edwards PA, et al. Complex multi-enhancer contacts captured by genome architecture mapping. Nature. PMID 28273065 DOI: 10.1038/Nature21411  0.406
2017 Wang XQ, Dostie J. Reciprocal regulation of chromatin state and architecture by HOTAIRM1 contributes to temporal collinear HOXA gene activation. Nucleic Acids Research. 45: 1091-1104. PMID 28180285 DOI: 10.1093/Nar/Gkw966  0.395
2016 Wang XQ, Dostie J. Chromosome folding and its regulation in health and disease. Current Opinion in Genetics & Development. 43: 23-30. PMID 27940207 DOI: 10.1016/J.Gde.2016.10.006  0.398
2015 Fraser J, Ferrai C, Chiariello AM, Schueler M, Rito T, Laudanno G, Barbieri M, Moore BL, Kraemer DC, Aitken S, Xie SQ, Morris KJ, Itoh M, Kawaji H, Jaeger I, ... ... Dostie J, et al. Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation. Molecular Systems Biology. 11: 852. PMID 26700852 DOI: 10.15252/Msb.20156492  0.392
2015 Malina A, Cameron CJ, Robert F, Blanchette M, Dostie J, Pelletier J. PAM multiplicity marks genomic target sites as inhibitory to CRISPR-Cas9 editing. Nature Communications. 6: 10124. PMID 26644285 DOI: 10.1038/Ncomms10124  0.325
2015 Moisan S, Berlivet S, Ka C, Le Gac G, Dostie J, Férec C. Analysis of long-range interactions in primary human cells identifies new cooperative CFTR regulatory elements. Nucleic Acids Research. PMID 26615198 DOI: 10.1093/Nar/Gkv1300  0.417
2015 Robert F, Barbeau M, Éthier S, Dostie J, Pelletier J. Pharmacological inhibition of DNA-PK stimulates Cas9-mediated genome editing. Genome Medicine. 7: 93. PMID 26307031 DOI: 10.1186/S13073-015-0215-6  0.341
2015 Fraser J, Williamson I, Bickmore WA, Dostie J. An Overview of Genome Organization and How We Got There: from FISH to Hi-C. Microbiology and Molecular Biology Reviews : Mmbr. 79: 347-72. PMID 26223848 DOI: 10.1128/Mmbr.00006-15  0.399
2014 Williamson I, Berlivet S, Eskeland R, Boyle S, Illingworth RS, Paquette D, Dostie J, Bickmore WA. Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization. Genes & Development. 28: 2778-91. PMID 25512564 DOI: 10.1101/Gad.251694.114  0.377
2014 Cencic R, Miura H, Malina A, Robert F, Ethier S, Schmeing TM, Dostie J, Pelletier J. Protospacer adjacent motif (PAM)-distal sequences engage CRISPR Cas9 DNA target cleavage. Plos One. 9: e109213. PMID 25275497 DOI: 10.1371/Journal.Pone.0109213  0.328
2014 Rousseau M, Ferraiuolo MA, Crutchley JL, Wang XQ, Miura H, Blanchette M, Dostie J. Classifying leukemia types with chromatin conformation data. Genome Biology. 15: R60. PMID 24995990 DOI: 10.1186/Gb-2014-15-4-R60  0.325
2014 Rousseau M, Crutchley JL, Miura H, Suderman M, Blanchette M, Dostie J. Hox in motion: tracking HoxA cluster conformation during differentiation. Nucleic Acids Research. 42: 1524-40. PMID 24174538 DOI: 10.1093/Nar/Gkt998  0.361
2013 Berlivet S, Paquette D, Dumouchel A, Langlais D, Dostie J, Kmita M. Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs. Plos Genetics. 9: e1004018. PMID 24385922 DOI: 10.1371/Journal.Pgen.1004018  0.349
2013 Malina A, Mills JR, Cencic R, Yan Y, Fraser J, Schippers LM, Paquet M, Dostie J, Pelletier J. Repurposing CRISPR/Cas9 for in situ functional assays. Genes & Development. 27: 2602-14. PMID 24298059 DOI: 10.1101/Gad.227132.113  0.341
2013 Barbieri M, Fraser J, Lavitas LM, Chotalia M, Dostie J, Pombo A, Nicodemi M. A polymer model explains the complexity of large-scale chromatin folding. Nucleus (Austin, Tex.). 4: 267-73. PMID 23823730 DOI: 10.4161/Nucl.25432  0.376
2013 Barbieri M, Chotalia M, Fraser J, Lavitas LM, Dostie J, Pombo A, Nicodemi M. A model of the large-scale organization of chromatin. Biochemical Society Transactions. 41: 508-12. PMID 23514144 DOI: 10.1042/Bst20120238  0.349
2012 Ferraiuolo MA, Sanyal A, Naumova N, Dekker J, Dostie J. From cells to chromatin: capturing snapshots of genome organization with 5C technology. Methods (San Diego, Calif.). 58: 255-67. PMID 23137922 DOI: 10.1016/J.Ymeth.2012.10.011  0.387
2012 Barbieri M, Chotalia M, Fraser J, Lavitas LM, Dostie J, Pombo A, Nicodemi M. Complexity of chromatin folding is captured by the strings and binders switch model. Proceedings of the National Academy of Sciences of the United States of America. 109: 16173-8. PMID 22988072 DOI: 10.1073/Pnas.1204799109  0.326
2012 Fraser J, Ethier SD, Miura H, Dostie J. A Torrent of data: mapping chromatin organization using 5C and high-throughput sequencing. Methods in Enzymology. 513: 113-41. PMID 22929767 DOI: 10.1016/B978-0-12-391938-0.00005-7  0.353
2012 Dostie J, Bickmore WA. Chromosome organization in the nucleus - charting new territory across the Hi-Cs. Current Opinion in Genetics & Development. 22: 125-31. PMID 22265226 DOI: 10.1016/J.Gde.2011.12.006  0.349
2012 Ethier SD, Miura H, Dostie J. Discovering genome regulation with 3C and 3C-related technologies. Biochimica Et Biophysica Acta. 1819: 401-10. PMID 22207201 DOI: 10.1016/J.Bbagrm.2011.12.004  0.409
2011 Rousseau M, Fraser J, Ferraiuolo MA, Dostie J, Blanchette M. Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling. Bmc Bioinformatics. 12: 414. PMID 22026390 DOI: 10.1186/1471-2105-12-414  0.428
2011 Wang XQ, Crutchley JL, Dostie J. Shaping the Genome with Non-Coding RNAs. Current Genomics. 12: 307-21. PMID 21874119 DOI: 10.2174/138920211796429772  0.443
2010 Fraser J, Rousseau M, Blanchette M, Dostie J. Computing chromosome conformation. Methods in Molecular Biology (Clifton, N.J.). 674: 251-68. PMID 20827597 DOI: 10.1007/978-1-60761-854-6_16  0.4
2010 Crutchley JL, Wang XQ, Ferraiuolo MA, Dostie J. Chromatin conformation signatures: ideal human disease biomarkers? Biomarkers in Medicine. 4: 611-29. PMID 20701449 DOI: 10.2217/Bmm.10.68  0.388
2010 Ferraiuolo MA, Rousseau M, Miyamoto C, Shenker S, Wang XQ, Nadler M, Blanchette M, Dostie J. The three-dimensional architecture of Hox cluster silencing. Nucleic Acids Research. 38: 7472-84. PMID 20660483 DOI: 10.1093/Nar/Gkq644  0.372
2009 D'haene B, Attanasio C, Beysen D, Dostie J, Lemire E, Bouchard P, Field M, Jones K, Lorenz B, Menten B, Buysse K, Pattyn F, Friedli M, Ucla C, Rossier C, et al. Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: implications for mutation screening. Plos Genetics. 5: e1000522. PMID 19543368 DOI: 10.1371/Journal.Pgen.1000522  0.354
2009 Suzuki H, Forrest AR, van Nimwegen E, Daub CO, Balwierz PJ, Irvine KM, Lassmann T, Ravasi T, Hasegawa Y, de Hoon MJ, Katayama S, Schroder K, Carninci P, Tomaru Y, ... ... Dostie J, et al. The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nature Genetics. 41: 553-62. PMID 19377474 DOI: 10.1038/Ng.375  0.354
2009 Fraser J, Rousseau M, Shenker S, Ferraiuolo MA, Hayashizaki Y, Blanchette M, Dostie J. Chromatin conformation signatures of cellular differentiation. Genome Biology. 10: R37. PMID 19374771 DOI: 10.1186/Gb-2009-10-4-R37  0.386
2007 Dostie J, Zhan Y, Dekker J. Chromosome conformation capture carbon copy technology. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 21.14. PMID 18265398 DOI: 10.1002/0471142727.Mb2114S80  0.411
2007 Dostie J, Dekker J. Mapping networks of physical interactions between genomic elements using 5C technology. Nature Protocols. 2: 988-1002. PMID 17446898 DOI: 10.1038/Nprot.2007.116  0.386
2006 Miele A, Gheldof N, Tabuchi TM, Dostie J, Dekker J. Mapping chromatin interactions by chromosome conformation capture. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 21.11. PMID 18265379 DOI: 10.1002/0471142727.Mb2111S74  0.38
2006 Dostie J, Richmond TA, Arnaout RA, Selzer RR, Lee WL, Honan TA, Rubio ED, Krumm A, Lamb J, Nusbaum C, Green RD, Dekker J. Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements. Genome Research. 16: 1299-309. PMID 16954542 DOI: 10.1101/Gr.5571506  0.393
2006 Koritzinsky M, Magagnin MG, van den Beucken T, Seigneuric R, Savelkouls K, Dostie J, Pyronnet S, Kaufman RJ, Weppler SA, Voncken JW, Lambin P, Koumenis C, Sonenberg N, Wouters BG. Gene expression during acute and prolonged hypoxia is regulated by distinct mechanisms of translational control. The Embo Journal. 25: 1114-25. PMID 16467844 DOI: 10.1038/Sj.Emboj.7600998  0.497
2005 Ferraiuolo MA, Basak S, Dostie J, Murray EL, Schoenberg DR, Sonenberg N. A role for the eIF4E-binding protein 4E-T in P-body formation and mRNA decay. The Journal of Cell Biology. 170: 913-24. PMID 16157702 DOI: 10.1083/Jcb.200504039  0.467
2005 Ma Y, Dostie J, Dreyfuss G, Van Duyne GD. The Gemin6-Gemin7 heterodimer from the survival of motor neurons complex has an Sm protein-like structure. Structure (London, England : 1993). 13: 883-92. PMID 15939020 DOI: 10.1016/J.Str.2005.03.014  0.333
2005 Feng W, Gubitz AK, Wan L, Battle DJ, Dostie J, Golembe TJ, Dreyfuss G. Gemins modulate the expression and activity of the SMN complex. Human Molecular Genetics. 14: 1605-11. PMID 15843395 DOI: 10.1093/Hmg/Ddi168  0.305
2005 Ferraiuolo MA, Basak S, Dostie J, Murray EL, Schoenberg DR, Sonenberg N. Correction: A role for the eIF4E-binding protein 4E-T in P-body formation and mRNA decay Journal of Cell Biology. 171: 175-175. DOI: 10.1083/Jcb.200504039091905C  0.456
2004 Chan CC, Dostie J, Diem MD, Feng W, Mann M, Rappsilber J, Dreyfuss G. eIF4A3 is a novel component of the exon junction complex. Rna (New York, N.Y.). 10: 200-9. PMID 14730019 DOI: 10.1261/Rna.5230104  0.353
2002 Dostie J, Dreyfuss G. Translation is required to remove Y14 from mRNAs in the cytoplasm. Current Biology : Cb. 12: 1060-7. PMID 12121612 DOI: 10.1016/S0960-9822(02)00902-8  0.339
2001 Pyronnet S, Dostie J, Sonenberg N. Suppression of cap-dependent translation in mitosis. Genes & Development. 15: 2083-93. PMID 11511540 DOI: 10.1101/Gad.889201  0.497
2000 Dostie J, Ferraiuolo M, Pause A, Adam SA, Sonenberg N. A novel shuttling protein, 4E-T, mediates the nuclear import of the mRNA 5' cap-binding protein, eIF4E. The Embo Journal. 19: 3142-56. PMID 10856257 DOI: 10.1093/Emboj/19.12.3142  0.488
2000 Dostie J, Lejbkowicz F, Sonenberg N. Nuclear eukaryotic initiation factor 4E (eIF4E) colocalizes with splicing factors in speckles. The Journal of Cell Biology. 148: 239-47. PMID 10648556 DOI: 10.1083/Jcb.148.2.239  0.492
1999 Donzé O, Dostie J, Sonenberg N. Regulatable expression of the interferon-induced double-stranded RNA dependent protein kinase PKR induces apoptosis and fas receptor expression. Virology. 256: 322-9. PMID 10191197 DOI: 10.1006/Viro.1999.9618  0.439
1999 Dostie J, Lejbkowicz F, Sonenberg N. eIF4E interacts with a shuttling protein Biochemistry and Cell Biology. 77: 391. DOI: 10.1139/O99-903G  0.432
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