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Arjen van Ooyen - Publications

Affiliations: 
Vrije Universiteit Amsterdam, Amsterdam, Netherlands 
Website:
http://www.falw.vu/~aooyen/
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52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Olde Scheper TV, Meredith RM, Mansvelder HD, van Pelt J, van Ooyen A. Dynamic Hebbian Cross-Correlation Learning Resolves the Spike Timing Dependent Plasticity Conundrum. Frontiers in Computational Neuroscience. 11: 119. PMID 29375358 DOI: 10.3389/Fncom.2017.00119  0.782
2014 Butz M, Steenbuck ID, van Ooyen A. Homeostatic structural plasticity can account for topology changes following deafferentation and focal stroke. Frontiers in Neuroanatomy. 8: 115. PMID 25360087 DOI: 10.3389/fnana.2014.00115  0.304
2014 van Pelt J, van Ooyen A, Uylings HB. Axonal and dendritic density field estimation from incomplete single-slice neuronal reconstructions. Frontiers in Neuroanatomy. 8: 54. PMID 25009472 DOI: 10.3389/fnana.2014.00054  0.366
2014 Groen MR, Paulsen O, Pérez-Garci E, Nevian T, Wortel J, Dekker MP, Mansvelder HD, van Ooyen A, Meredith RM. Development of dendritic tonic GABAergic inhibition regulates excitability and plasticity in CA1 pyramidal neurons. Journal of Neurophysiology. 112: 287-99. PMID 24760781 DOI: 10.1152/Jn.00066.2014  0.793
2014 Hjorth JJ, van Pelt J, Mansvelder HD, van Ooyen A. Competitive dynamics during resource-driven neurite outgrowth. Plos One. 9: e86741. PMID 24498280 DOI: 10.1371/journal.pone.0086741  0.572
2014 McAssey MP, Bijma F, Tarigan B, van Pelt J, van Ooyen A, de Gunst M. A morpho-density approach to estimating neural connectivity. Plos One. 9: e86526. PMID 24489738 DOI: 10.1371/Journal.Pone.0086526  0.372
2014 van Ooyen A, Carnell A, de Ridder S, Tarigan B, Mansvelder HD, Bijma F, de Gunst M, van Pelt J. Independently outgrowing neurons and geometry-based synapse formation produce networks with realistic synaptic connectivity. Plos One. 9: e85858. PMID 24454938 DOI: 10.1371/Journal.Pone.0085858  0.744
2013 van Pelt J, van Ooyen A. Estimating neuronal connectivity from axonal and dendritic density fields. Frontiers in Computational Neuroscience. 7: 160. PMID 24324430 DOI: 10.3389/fncom.2013.00160  0.383
2013 Butz M, van Ooyen A. A simple rule for dendritic spine and axonal bouton formation can account for cortical reorganization after focal retinal lesions. Plos Computational Biology. 9: e1003259. PMID 24130472 DOI: 10.1371/journal.pcbi.1003259  0.378
2012 Olde Scheper TV, Mansvelder HD, van Ooyen A. Short term depression unmasks the ghost frequency. Plos One. 7: e50189. PMID 23227159 DOI: 10.1371/journal.pone.0050189  0.784
2012 Avella Gonzalez OJ, van Aerde KI, van Elburg RA, Poil SS, Mansvelder HD, Linkenkaer-Hansen K, van Pelt J, van Ooyen A. External drive to inhibitory cells induces alternating episodes of high- and low-amplitude oscillations. Plos Computational Biology. 8: e1002666. PMID 22956901 DOI: 10.1371/Journal.Pcbi.1002666  0.308
2012 Sterratt DC, Groen MR, Meredith RM, van Ooyen A. Spine calcium transients induced by synaptically-evoked action potentials can predict synapse location and establish synaptic democracy. Plos Computational Biology. 8: e1002545. PMID 22719238 DOI: 10.1371/Journal.Pcbi.1002545  0.783
2012 Rombouts JO, Van Ooyen A, Roelfsema PR, Bohte SM. Biologically plausible multi-dimensional reinforcement learning in neural networks Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7552: 443-450. DOI: 10.1007/978-3-642-33269-2_56  0.475
2011 Schmitz SK, Hjorth JJ, Joemai RM, Wijntjes R, Eijgenraam S, de Bruijn P, Georgiou C, de Jong AP, van Ooyen A, Verhage M, Cornelisse LN, Toonen RF, Veldkamp WJ, Veldkamp W. Automated analysis of neuronal morphology, synapse number and synaptic recruitment. Journal of Neuroscience Methods. 195: 185-93. PMID 21167201 DOI: 10.1016/J.Jneumeth.2010.12.011  0.639
2011 Carnell A, de Ridder S, van Pelt J, van Ooyen A. Independently outgrowing neurons with a geometric synapse formation model develop realistic network connectivity patterns with small-world properties Bmc Neuroscience. 12. DOI: 10.1186/1471-2202-12-S1-P356  0.715
2011 olde Scheper T, Meredith R, Mansvelder H, van Pelt J, van Ooyen A. Hebbian cross-correlation learning emerges as spike timing dependent plasticity Bmc Neuroscience. 12. DOI: 10.1186/1471-2202-12-S1-P355  0.783
2011 Schmitz SK, Hjorth JJJ, Joemai RMS, Wijntjes R, Eijgenraam S, de Bruijn P, Georgiou C, de Jong APH, van Ooyen A, Verhage M, Cornelisse LN, Toonen RF, Veldkamp WJH. Corrigendum to " Automated analysis of neuronal morphology, synapse number and synaptic recruitment" [J. Neurosci. Methods 195 (2) (2011) 185-193] Journal of Neuroscience Methods. 197: 190. DOI: 10.1016/J.Jneumeth.2011.01.028  0.594
2010 van Pelt J, Carnell A, de Ridder S, Mansvelder HD, van Ooyen A. An algorithm for finding candidate synaptic sites in computer generated networks of neurons with realistic morphologies. Frontiers in Computational Neuroscience. 4: 148. PMID 21160548 DOI: 10.3389/Fncom.2010.00148  0.7
2010 van Elburg RA, van Ooyen A. Impact of dendritic size and dendritic topology on burst firing in pyramidal cells. Plos Computational Biology. 6: e1000781. PMID 20485556 DOI: 10.1371/journal.pcbi.1000781  0.423
2010 Roelfsema PR, van Ooyen A, Watanabe T. Perceptual learning rules based on reinforcers and attention. Trends in Cognitive Sciences. 14: 64-71. PMID 20060771 DOI: 10.1016/j.tics.2009.11.005  0.49
2009 Butz M, van Ooyen A, Wörgötter F. A model for cortical rewiring following deafferentation and focal stroke. Frontiers in Computational Neuroscience. 3: 10. PMID 19680468 DOI: 10.3389/Neuro.10.010.2009  0.431
2009 Koene RA, Tijms B, van Hees P, Postma F, de Ridder A, Ramakers GJ, van Pelt J, van Ooyen A. NETMORPH: a framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies. Neuroinformatics. 7: 195-210. PMID 19672726 DOI: 10.1007/s12021-009-9052-3  0.392
2009 Kaiser M, Hilgetag CC, van Ooyen A. A simple rule for axon outgrowth and synaptic competition generates realistic connection lengths and filling fractions. Cerebral Cortex (New York, N.Y. : 1991). 19: 3001-10. PMID 19435708 DOI: 10.1093/cercor/bhp071  0.385
2009 van Elburg RA, van Ooyen A. Generalization of the event-based Carnevale-Hines integration scheme for integrate-and-fire models. Neural Computation. 21: 1913-30. PMID 19292645 DOI: 10.1162/neco.2009.07-08-815  0.32
2009 Butz M, Wörgötter F, van Ooyen A. Activity-dependent structural plasticity. Brain Research Reviews. 60: 287-305. PMID 19162072 DOI: 10.1016/J.Brainresrev.2008.12.023  0.333
2009 Kaiser M, Hilgetag CC, van Ooyen A. Random axon outgrowth and synaptic competition generate realistic connection lengths and filling fractions Bmc Neuroscience. 10. DOI: 10.1186/1471-2202-10-S1-P58  0.329
2009 Groen MR, Meredith RM, Sterratt DC, Mansvelder HD, van Ooyen A. Back propagating action potential and distant-dependent calcium signaling in CA1 pyramidal neurons Bmc Neuroscience. 10. DOI: 10.1186/1471-2202-10-S1-P336  0.793
2009 Gonzalez OJA, van Elburg R, Mansvelder H, van Pelt J, van Ooyen A. Influence of external input on waxing and waning of neuronal network oscillations Bmc Neuroscience. 10. DOI: 10.1186/1471-2202-10-S1-P257  0.346
2009 van Elburb RA, Bosman LW, Ridder MC, Brussaard AB, van Ooyen A. GABAA receptor plasticity provides homeostasis of neuronal activity in a neocortical microcircuit model Bmc Neuroscience. 10. DOI: 10.1186/1471-2202-10-S1-P218  0.448
2009 Butz M, Wörgötter F, van Ooyen A. A model for cortical remapping and structural plasticity following focal retinal lesions Bmc Neuroscience. 10. DOI: 10.1186/1471-2202-10-S1-P206  0.378
2009 Watling LA, Geerts R, Roelfsema PR, van Ooyen A. The attention-gated reinforcement learning model can explain experimentally observed changes in tuning curves that follow category learning Bmc Neuroscience. 10. DOI: 10.1186/1471-2202-10-S1-P137  0.495
2008 Butz M, Teuchert-Noodt G, Grafen K, van Ooyen A. Inverse relationship between adult hippocampal cell proliferation and synaptic rewiring in the dentate gyrus. Hippocampus. 18: 879-98. PMID 18481284 DOI: 10.1002/Hipo.20445  0.408
2008 Goodhill G, Baker C, Balasubramanian V, Bazhenov M, Beck J, Becker S, Bethge M, Boahen K, Boden M, Bonin V, Bouret S, Fairhall A, Flash T, French R, Gillies A, ... ... Van Ooyen A, et al. Network: Computation in Neural Systems: Editorial Network: Computation in Neural Systems. 19: 1-2. DOI: 10.1080/09548980801915409  0.719
2006 Steuber V, Willshaw D, Van Ooyen A. Generation of time delays: simplified models of intracellular signalling in cerebellar Purkinje cells. Network (Bristol, England). 17: 173-91. PMID 16818396 DOI: 10.1080/09548980500520328  0.709
2006 van Ooyen A, Roelfsema PR. Envisioning the reward. Neuron. 50: 188-90. PMID 16630831 DOI: 10.1016/j.neuron.2006.04.008  0.414
2005 Roelfsema PR, van Ooyen A. Attention-gated reinforcement learning of internal representations for classification. Neural Computation. 17: 2176-214. PMID 16105222 DOI: 10.1162/0899766054615699  0.521
2004 Van Pelt J, Kamermans M, Levelt C, Van Ooyen A, Ramakers G, Roelfsema P. Progress in Brain Research: Preface Progress in Brain Research. 147: ix-x. DOI: 10.1016/S0079-6123(04)47027-7  0.395
2004 Sterratt DC, van Ooyen A. Does a dendritic democracy need a ruler? Neurocomputing. 58: 437-442. DOI: 10.1016/j.neucom.2004.01.078  0.721
2002 van Ooyen A, Duijnhouwer J, Remme MW, van Pelt J. The effect of dendritic topology on firing patterns in model neurons. Network (Bristol, England). 13: 311-25. PMID 12222816 DOI: 10.1088/0954-898X_13_3_304  0.729
2002 Sterratt DC, Van Ooyen A. Does morphology influence temporal plasticity? Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2415: 186-191.  0.699
2001 van Pelt J, van Ooyen A, Uylings HB. The need for integrating neuronal morphology databases and computational environments in exploring neuronal structure and function. Anatomy and Embryology. 204: 255-65. PMID 11720232 DOI: 10.1007/s004290100197  0.361
2001 Duijnhouwer J, Remme MWH, Van Ooyen A, Van Pelt J. Influence of dendritic topology on firing patterns in model neurons Neurocomputing. 38: 183-189. DOI: 10.1016/S0925-2312(01)00502-1  0.718
2000 van Ooyen A, Willshaw DJ. Development of nerve connections under the control of neurotrophic factors: parallels with consumer-resource systems in population biology. Journal of Theoretical Biology. 206: 195-210. PMID 10966757 DOI: 10.1006/jtbi.2000.2114  0.582
2000 Eglen SJ, van Ooyen A, Willshaw DJ. Lateral cell movement driven by dendritic interactions is sufficient to form retinal mosaics. Network (Bristol, England). 11: 103-18. PMID 10735531  0.707
2000 Van Ooyen A, Willshaw DJ, Ramakers GJA. Influence of dendritic morphology on axonal competition Neurocomputing. 32: 255-260. DOI: 10.1016/S0925-2312(00)00172-7  0.575
1999 van Ooyen A, Willshaw DJ. Competition for neurotrophic factor in the development of nerve connections. Proceedings. Biological Sciences / the Royal Society. 266: 883-92. PMID 10380678 DOI: 10.1098/rspb.1999.0719  0.58
1999 van Ooyen A, Willshaw DJ. Poly- and mononeuronal innervation in a model for the development of neuromuscular connections. Journal of Theoretical Biology. 196: 495-511. PMID 10036202 DOI: 10.1006/jtbi.1998.0849  0.596
1999 Eglen SJ, van Ooyen A. Modelling retinal mosaic development with dendritic outgrowth and lateral cell movement Iee Conference Publication. 1: 377-382.  0.603
1997 van Oss C, van Ooyen A. Effects of inhibition on neural network development through activity-dependent neurite outgrowth. Journal of Theoretical Biology. 185: 263-80. PMID 9135804 DOI: 10.1006/jtbi.1996.0361  0.309
1997 Van Ooyen A, Willshaw DJ. Competition amongst neurons for neurotrophins Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1327: 140-144.  0.596
1996 van Pelt J, van Ooyen A, Corner MA. Growth cone dynamics and activity-dependent processes in neuronal network development. Progress in Brain Research. 108: 333-46. PMID 8979812  0.317
1995 Van Ooyen A, Van Pelt J, Corner MA. Implications of activity dependent neurite outgrowth for neuronal morphology and network development. Journal of Theoretical Biology. 172: 63-82. PMID 7891450 DOI: 10.1006/jtbi.1995.0005  0.366
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