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Aashish N. Adhikari, Ph.D. - Publications

Affiliations: 
2012 Chemistry University of Chicago, Chicago, IL 
Area:
statistical mechanics of polymers in the liquid phase, protein dynamics aggregation, and folding, equilibrium aggregation phenomena, and molecular electronic structure
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7/21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Sachleben JR, Adhikari AN, Gawlak G, Hoey RJ, Liu G, Joachimiak A, Montelione GT, Sosnick TR, Koide S. Aromatic Claw: A new fold with high aromatic content that evades structural prediction. Protein Science : a Publication of the Protein Society. PMID 27750371 DOI: 10.1002/Pro.3069  0.673
2015 Baxa MC, Yu W, Adhikari AN, Ge L, Xia Z, Zhou R, Freed KF, Sosnick TR. Even with nonnative interactions, the updated folding transition states of the homologs Proteins G & L are extensive and similar. Proceedings of the National Academy of Sciences of the United States of America. PMID 26100906 DOI: 10.1073/Pnas.1503613112  0.479
2013 Adhikari AN, Freed KF, Sosnick TR. Simplified protein models: predicting folding pathways and structure using amino acid sequences. Physical Review Letters. 111: 028103. PMID 23889448 DOI: 10.1103/Physrevlett.111.028103  0.72
2013 Sánchez-Rodríguez JE, Khalili-Araghi F, Adhikari A, Sosnick T, Roux B, Holmgren M, Bezanilla F. Probing Conformational Changes of the Na+/K+ ATPase upon Ouabain Binding by using a Spectroscopic Approach Biophysical Journal. 104: 300a. DOI: 10.1016/J.Bpj.2012.11.1669  0.519
2012 Adhikari AN, Freed KF, Sosnick TR. De novo prediction of protein folding pathways and structure using the principle of sequential stabilization. Proceedings of the National Academy of Sciences of the United States of America. 109: 17442-7. PMID 23045636 DOI: 10.1073/Pnas.1209000109  0.674
2012 Yoo TY, Adhikari A, Xia Z, Huynh T, Freed KF, Zhou R, Sosnick TR. The folding transition state of protein L is extensive with nonnative interactions (and not small and polarized). Journal of Molecular Biology. 420: 220-34. PMID 22522126 DOI: 10.1016/J.Jmb.2012.04.013  0.7
2012 Adhikari AN, Peng J, Wilde M, Xu J, Freed KF, Sosnick TR. Modeling large regions in proteins: applications to loops, termini, and folding. Protein Science : a Publication of the Protein Society. 21: 107-21. PMID 22095743 DOI: 10.1002/Pro.767  0.663
Low-probability matches (unlikely to be authored by this person)
2019 Adhikari AN. Gene-specific features enhance interpretation of mutational impact on acid alpha-glucosidase enzyme activity. Human Mutation. PMID 31228295 DOI: 10.1002/humu.23846  0.244
2023 Gao H, Hamp T, Ede J, Schraiber JG, McRae J, Singer-Berk M, Yang Y, Dietrich A, Fiziev P, Kuderna L, Sundaram L, Wu Y, Adhikari A, Field Y, Chen C, et al. The landscape of tolerated genetic variation in humans and primates. Biorxiv : the Preprint Server For Biology. PMID 37205491 DOI: 10.1101/2023.05.01.538953  0.189
2023 Gao H, Hamp T, Ede J, Schraiber JG, McRae J, Singer-Berk M, Yang Y, Dietrich ASD, Fiziev PP, Kuderna LFK, Sundaram L, Wu Y, Adhikari A, Field Y, Chen C, et al. The landscape of tolerated genetic variation in humans and primates. Science (New York, N.Y.). 380: eabn8153. PMID 37262156 DOI: 10.1126/science.abn8197  0.189
2017 Chandonia JM, Adhikari A, Carraro M, Chhibber A, Cutting GR, Fu Y, Gasparini A, Jones DT, Kramer A, Kundu K, Lam HY, Leonardi E, Moult J, Pal LR, Searls DB, et al. 3Lessons from the CAGI-4 Hopkins clinical panel challenge. Human Mutation. PMID 28397312 DOI: 10.1002/Humu.23225  0.168
2021 McInnes G, Sharo AG, Koleske ML, Brown JEH, Norstad M, Adhikari AN, Wang S, Brenner SE, Halpern J, Koenig BA, Magnus DC, Gallagher RC, Giacomini KM, Altman RB. Opportunities and challenges for the computational interpretation of rare variation in clinically important genes. American Journal of Human Genetics. 108: 535-548. PMID 33798442 DOI: 10.1016/j.ajhg.2021.03.003  0.159
2007 Adhikari AN, Capurso NA, Bingemann D. Heterogeneous dynamics and dynamic heterogeneities at the glass transition probed with single molecule spectroscopy. The Journal of Chemical Physics. 127: 114508. PMID 17887858 DOI: 10.1063/1.2768955  0.149
2020 Adhikari AN, Currier RJ, Tang H, Turgeon CT, Nussbaum RL, Srinivasan R, Sunderam U, Kwok PY, Brenner SE, Gavrilov D, Puck JM, Gallagher R. Genomic Analysis of Historical Cases with Positive Newborn Screens for Short-Chain Acyl-CoA Dehydrogenase Deficiency Shows That a Validated Second-Tier Biochemical Test Can Replace Future Sequencing. International Journal of Neonatal Screening. 6. PMID 32802992 DOI: 10.3390/Ijns6020041  0.14
2019 Hu Z, Yu C, Furutsuki M, Andreoletti G, Ly M, Hoskins R, Adhikari AN, Brenner SE. VIPdb, a genetic Variant Impact Predictor Database. Human Mutation. PMID 31283070 DOI: 10.1002/Humu.23858  0.124
2016 Punwani D, Zhang Y, Yu J, Cowan MJ, Rana S, Kwan A, Adhikari AN, Lizama CO, Mendelsohn BA, Fahl SP, Chellappan A, Srinivasan R, Brenner SE, Wiest DL, Puck JM. Multisystem Anomalies in Severe Combined Immunodeficiency with Mutant BCL11B. The New England Journal of Medicine. 375: 2165-2176. PMID 27959755 DOI: 10.1056/Nejmoa1509164  0.117
2019 Kasak L, Hunter JM, Udani R, Bakolitsa C, Hu Z, Adhikari AN, Babbi G, Casadio R, Gough J, Guerrero RF, Jiang Y, Joseph T, Katsonis P, Kotte S, Kundu K, et al. CAGI SickKids challenges: Assessment of phenotype and variant predictions derived from clinical and genomic data of children with undiagnosed diseases. Human Mutation. PMID 31322791 DOI: 10.1002/Humu.23874  0.112
2021 Woerner AC, Gallagher RC, Vockley J, Adhikari AN. The Use of Whole Genome and Exome Sequencing for Newborn Screening: Challenges and Opportunities for Population Health. Frontiers in Pediatrics. 9: 663752. PMID 34350142 DOI: 10.3389/fped.2021.663752  0.091
2023 Sharo AG, Zou Y, Adhikari AN, Brenner SE. ClinVar and HGMD genomic variant classification accuracy has improved over time, as measured by implied disease burden. Genome Medicine. 15: 51. PMID 37443081 DOI: 10.1186/s13073-023-01199-y  0.08
2020 Adhikari AN, Gallagher RC, Wang Y, Currier RJ, Amatuni G, Bassaganyas L, Chen F, Kundu K, Kvale M, Mooney SD, Nussbaum RL, Randi SS, Sanford J, Shieh JT, Srinivasan R, et al. The role of exome sequencing in newborn screening for inborn errors of metabolism. Nature Medicine. PMID 32778825 DOI: 10.1038/S41591-020-0966-5  0.065
2012 Dahanayaka NJ, Agampodi SB, Ranasinghe OR, Jayaweera PM, Wickramasinghe WA, Adhikari AN, Chathurani HK, Dissanayaka UT. Inadequacy of the risk factor based approach to detect gestational diabetes mellitus. The Ceylon Medical Journal. 57: 5-9. PMID 22453704 DOI: 10.4038/cmj.v57i1.4193  0.016
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