Laura R. Jarboe, Ph.D. - Publications

Affiliations: 
2006 University of California, Los Angeles, Los Angeles, CA 
Area:
Chemical and Biomolecular Engineering

51/78 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Chen Y, Boggess EE, Ocasio ER, Warner A, Kerns L, Drapal V, Gossling C, Ross W, Gourse RL, Shao Z, Dickerson J, Mansell TJ, Jarboe LR. Reverse engineering of fatty acid-tolerant Escherichia coli identifies design strategies for robust microbial cell factories. Metabolic Engineering. PMID 32474056 DOI: 10.1016/J.Ymben.2020.05.001  0.335
2020 Jin T, Käldström M, Benavides A, Rechulski MDK, Jarboe LR. Utilization of mechanocatalytic oligosaccharides by ethanologenic Escherichia coli as a model microbial cell factory. Amb Express. 10: 28. PMID 32016659 DOI: 10.1186/S13568-020-0965-4  0.32
2019 Davis K, Rover MR, Salvachúa D, Smith RG, Beckham GT, Wen Z, Brown RC, Jarboe LR. Promoting microbial utilization of phenolic substrates from bio-oil. Journal of Industrial Microbiology & Biotechnology. PMID 31270700 DOI: 10.1007/S10295-019-02208-Z  0.306
2019 Chi Z, Zhao X, Daugaard T, Dalluge D, Rover M, Johnston P, Salazar AM, Santoscoy MC, Smith R, Brown RC, Wen Z, Zabotina OA, Jarboe LR. Comparison of product distribution, content and fermentability of biomass in a hybrid thermochemical/biological processing platform Biomass and Bioenergy. 120: 107-116. DOI: 10.1016/J.Biombioe.2018.11.006  0.349
2018 Chen Y, Reinhardt M, Neris N, Kerns L, Mansell TJ, Jarboe LR. Lessons in Membrane Engineering for Octanoic Acid Production from Environmental Isolates. Applied and Environmental Microbiology. PMID 30030228 DOI: 10.1128/Aem.01285-18  0.371
2018 Tan Z, Yoon JM, Chowdhury A, Burdick K, Jarboe LR, Maranas CD, Shanks JV. Engineering ofinherent fatty acid biosynthesis capacity to increase octanoic acid production. Biotechnology For Biofuels. 11: 87. PMID 29619083 DOI: 10.1186/S13068-018-1078-Z  0.371
2017 Liang X, Liao C, Soupir ML, Jarboe LR, Thompson ML, Dixon PM. Escherichia coli attachment to model particulates: The effects of bacterial cell characteristics and particulate properties. Plos One. 12: e0184664. PMID 28910343 DOI: 10.1371/Journal.Pone.0184664  0.313
2017 Tan Z, Khakbaz P, Chen Y, Lombardo J, Yoon JM, Shanks JV, Klauda JB, Jarboe LR. Engineering Escherichia coli Membrane Phospholipid Head Distribution Improves Tolerance and Production of Biorenewables. Metabolic Engineering. PMID 28867349 DOI: 10.1016/J.Ymben.2017.08.006  0.351
2017 Jin T, Rover MR, Petersen EM, Chi Z, Smith RG, Brown RC, Wen Z, Jarboe LR. Damage to the microbial cell membrane during pyrolytic sugar utilization and strategies for increasing resistance. Journal of Industrial Microbiology & Biotechnology. PMID 28551747 DOI: 10.1007/S10295-017-1958-4  0.364
2017 Liao C, Liang X, Yang F, Soupir ML, Howe AC, Thompson ML, Jarboe LR. Allelic Variation in Outer Membrane Protein A and Its Influence on Attachment of Escherichia coli to Corn Stover. Frontiers in Microbiology. 8: 708. PMID 28515712 DOI: 10.3389/Fmicb.2017.00708  0.314
2017 Tan Z, Black W, Yoon JM, Shanks JV, Jarboe LR. Improving Escherichia coli membrane integrity and fatty acid production by expression tuning of FadL and OmpF. Microbial Cell Factories. 16: 38. PMID 28245829 DOI: 10.1186/S12934-017-0650-8  0.336
2016 Liang X, Liao C, Thompson ML, Soupir ML, Jarboe LR, Dixon PM. E. coli Surface Properties Differ between Stream Water and Sediment Environments. Frontiers in Microbiology. 7: 1732. PMID 27847507 DOI: 10.3389/Fmicb.2016.01732  0.322
2016 Bacik JP, Jarboe LR. Bioconversion of anhydrosugars: Emerging concepts and strategies. Iubmb Life. PMID 27416973 DOI: 10.1002/Iub.1533  0.313
2016 Zhao X, Jarboe L, Wen Z. Utilization of pyrolytic substrate by microalga Chlamydomonas reinhardtii: cell membrane property change as a response of the substrate toxicity. Applied Microbiology and Biotechnology. PMID 26995605 DOI: 10.1007/S00253-016-7439-2  0.319
2016 Tan Z, Yoon JM, Nielsen DR, Shanks JV, Jarboe LR. Membrane Engineering via Trans Unsaturated Fatty Acids Production Improves Escherichia coli Robustness and Production of Biorenewables. Metabolic Engineering. PMID 26875445 DOI: 10.1016/J.Ymben.2016.02.004  0.384
2016 Lian J, McKenna R, Rover MR, Nielsen DR, Wen Z, Jarboe LR. Production of biorenewable styrene: utilization of biomass-derived sugars and insights into toxicity. Journal of Industrial Microbiology & Biotechnology. PMID 26803503 DOI: 10.1007/S10295-016-1734-X  0.336
2016 Davis K, Rover M, Brown R, Bai X, Wen Z, Jarboe L. Recovery and Utilization of Lignin Monomers as Part of the Biorefinery Approach Energies. 9: 808. DOI: 10.3390/En9100808  0.309
2015 Shen Y, Jarboe L, Brown R, Wen Z. A thermochemical-biochemical hybrid processing of lignocellulosic biomass for producing fuels and chemicals. Biotechnology Advances. PMID 26492814 DOI: 10.1016/J.Biotechadv.2015.10.006  0.316
2015 Trček J, Mira NP, Jarboe LR. Adaptation and tolerance of bacteria against acetic acid. Applied Microbiology and Biotechnology. 99: 6215-29. PMID 26142387 DOI: 10.1007/S00253-015-6762-3  0.381
2015 Royce LA, Yoon JM, Chen Y, Rickenbach E, Shanks JV, Jarboe LR. Evolution for exogenous octanoic acid tolerance improves carboxylic acid production and membrane integrity. Metabolic Engineering. 29: 180-8. PMID 25839166 DOI: 10.1016/J.Ymben.2015.03.014  0.363
2015 Fu Y, Yoon JM, Jarboe L, Shanks JV. Metabolic flux analysis of Escherichia coli MG1655 under octanoic acid (C8) stress. Applied Microbiology and Biotechnology. 99: 4397-408. PMID 25620365 DOI: 10.1007/S00253-015-6387-6  0.368
2014 Claypool JT, Raman DR, Jarboe LR, Nielsen DR. Technoeconomic evaluation of bio-based styrene production by engineered Escherichia coli. Journal of Industrial Microbiology & Biotechnology. 41: 1211-6. PMID 24939174 DOI: 10.1007/S10295-014-1469-5  0.332
2014 Rover MR, Johnston PA, Jin T, Smith RG, Brown RC, Jarboe L. Production of clean pyrolytic sugars for fermentation. Chemsuschem. 7: 1662-8. PMID 24706373 DOI: 10.1002/Cssc.201301259  0.313
2014 Royce LA, Boggess E, Fu Y, Liu P, Shanks JV, Dickerson J, Jarboe LR. Transcriptomic analysis of carboxylic acid challenge in Escherichia coli: beyond membrane damage. Plos One. 9: e89580. PMID 24586888 DOI: 10.1371/Journal.Pone.0089580  0.385
2014 Bacik J, Broom-Peltz B, Jarboe L, Mark B, Michalczyk R, Fisher Z, Unkefer C. Structure and mechanism of LGK: insights into the bioconversion of levoglucosan Acta Crystallographica Section a Foundations and Advances. 70: C1205-C1205. DOI: 10.1107/S2053273314087944  0.326
2013 Jarboe LR, Royce LA, Liu P. Understanding biocatalyst inhibition by carboxylic acids. Frontiers in Microbiology. 4: 272. PMID 24027566 DOI: 10.3389/Fmicb.2013.00272  0.413
2013 Royce LA, Liu P, Stebbins MJ, Hanson BC, Jarboe LR. The damaging effects of short chain fatty acids on Escherichia coli membranes. Applied Microbiology and Biotechnology. 97: 8317-27. PMID 23912117 DOI: 10.1007/S00253-013-5113-5  0.364
2013 Liang Y, Zhao X, Chi Z, Rover M, Johnston P, Brown R, Jarboe L, Wen Z. Utilization of acetic acid-rich pyrolytic bio-oil by microalga Chlamydomonas reinhardtii: reducing bio-oil toxicity and enhancing algal toxicity tolerance. Bioresource Technology. 133: 500-6. PMID 23455221 DOI: 10.1016/J.Biortech.2013.01.134  0.32
2013 Liu P, Chernyshov A, Najdi T, Fu Y, Dickerson J, Sandmeyer S, Jarboe L. Membrane stress caused by octanoic acid in Saccharomyces cerevisiae Applied Microbiology and Biotechnology. 97: 3239-3251. PMID 23435986 DOI: 10.1007/S00253-013-4773-5  0.361
2013 Kautharapu KB, Rathmacher J, Jarboe LR. Growth condition optimization for docosahexaenoic acid (DHA) production by Moritella marina MP-1. Applied Microbiology and Biotechnology. 97: 2859-66. PMID 23111600 DOI: 10.1007/S00253-012-4529-7  0.345
2013 Zhao X, Chi Z, Rover M, Brown R, Jarboe L, Wen Z. Microalgae fermentation of acetic acid-rich pyrolytic bio-oil: Reducing bio-oil toxicity by alkali treatment Environmental Progress and Sustainable Energy. 32: 955-961. DOI: 10.1002/Ep.11813  0.304
2012 Liu P, Jarboe LR. Metabolic engineering of biocatalysts for carboxylic acids production. Computational and Structural Biotechnology Journal. 3: e201210011. PMID 24688671 DOI: 10.5936/Csbj.201210011  0.379
2012 Jarboe LR, Liu P, Kautharapu KB, Ingram LO. Optimization of enzyme parameters for fermentative production of biorenewable fuels and chemicals. Computational and Structural Biotechnology Journal. 3: e201210005. PMID 24688665 DOI: 10.5936/Csbj.201210005  0.324
2011 Layton DS, Ajjarapu A, Choi DW, Jarboe LR. Engineering ethanologenic Escherichia coli for levoglucosan utilization. Bioresource Technology. 102: 8318-22. PMID 21719279 DOI: 10.1016/J.Biortech.2011.06.011  0.353
2011 Fu Y, Jarboe LR, Dickerson JA. Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities. Bmc Bioinformatics. 12: 233. PMID 21668997 DOI: 10.1186/1471-2105-12-233  0.352
2011 Jarboe LR. YqhD: a broad-substrate range aldehyde reductase with various applications in production of biorenewable fuels and chemicals. Applied Microbiology and Biotechnology. 89: 249-57. PMID 20924577 DOI: 10.1007/S00253-010-2912-9  0.366
2011 Turner PC, Miller EN, Jarboe LR, Baggett CL, Shanmugam KT, Ingram LO. YqhC regulates transcription of the adjacent Escherichia coli genes yqhD and dkgA that are involved in furfural tolerance. Journal of Industrial Microbiology & Biotechnology. 38: 431-9. PMID 20676725 DOI: 10.1007/S10295-010-0787-5  0.348
2011 Jarboe LR, Liu P, Royce LA. Engineering inhibitor tolerance for the production of biorenewable fuels and chemicals Current Opinion in Chemical Engineering. 1: 38-42. DOI: 10.1016/J.Coche.2011.08.003  0.374
2010 Jarboe LR, Zhang X, Wang X, Moore JC, Shanmugam KT, Ingram LO. Metabolic engineering for production of biorenewable fuels and chemicals: contributions of synthetic biology. Journal of Biomedicine & Biotechnology. 2010: 761042. PMID 20414363 DOI: 10.1155/2010/761042  0.335
2010 Miller EN, Turner PC, Jarboe LR, Ingram LO. Genetic changes that increase 5-hydroxymethyl furfural resistance in ethanol-producing Escherichia coli LY180. Biotechnology Letters. 32: 661-7. PMID 20131081 DOI: 10.1007/S10529-010-0209-9  0.368
2010 Jarboe LR, Hyduke DR, Liao JC. Systems Approaches to Unraveling Nitric Oxide Response Networks in Prokaryotes Nitric Oxide. 103-136. DOI: 10.1016/B978-0-12-373866-0.00004-6  0.682
2009 Zhang X, Jantama K, Moore JC, Jarboe LR, Shanmugam KT, Ingram LO. Metabolic evolution of energy-conserving pathways for succinate production in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 106: 20180-5. PMID 19918073 DOI: 10.1073/Pnas.0905396106  0.364
2009 Miller EN, Jarboe LR, Turner PC, Pharkya P, Yomano LP, York SW, Nunn D, Shanmugam KT, Ingram LO. Furfural inhibits growth by limiting sulfur assimilation in ethanologenic Escherichia coli strain LY180. Applied and Environmental Microbiology. 75: 6132-41. PMID 19684179 DOI: 10.1128/Aem.01187-09  0.422
2009 Miller EN, Jarboe LR, Yomano LP, York SW, Shanmugam KT, Ingram LO. Silencing of NADPH-dependent oxidoreductase genes (yqhD and dkgA) in furfural-resistant ethanologenic Escherichia coli. Applied and Environmental Microbiology. 75: 4315-23. PMID 19429550 DOI: 10.1128/Aem.00567-09  0.329
2008 Jarboe LR, Hyduke DR, Tran LM, Chou KJ, Liao JC. Determination of the Escherichia coli S-nitrosoglutathione response network using integrated biochemical and systems analysis. The Journal of Biological Chemistry. 283: 5148-57. PMID 18070885 DOI: 10.1074/Jbc.M706018200  0.715
2007 Jarboe LR, Grabar TB, Yomano LP, Shanmugan KT, Ingram LO. Development of ethanologenic bacteria. Advances in Biochemical Engineering/Biotechnology. 108: 237-61. PMID 17665158 DOI: 10.1007/10_2007_068  0.323
2007 Hyduke DR, Jarboe LR, Tran LM, Chou KJ, Liao JC. Integrated network analysis identifies nitric oxide response networks and dihydroxyacid dehydratase as a crucial target in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 104: 8484-9. PMID 17494765 DOI: 10.1073/Pnas.0610888104  0.711
2005 Zhou B, Beckwith D, Jarboe LR, Liao JC. Markov Chain modeling of pyelonephritis-associated pili expression in uropathogenic Escherichia coli. Biophysical Journal. 88: 2541-53. PMID 15681643 DOI: 10.1529/Biophysj.104.052126  0.482
2005 Jarboe LR. Regulatory networks in escherichia coli: Chemogenomic-based identification of the nitrogen oxide response and stochastic modeling of pap operon regulation Aiche Annual Meeting, Conference Proceedings. 3396.  0.334
2005 Jarboe LR, Hyduke D, Tran LM, Liao JC. Chemogenomic analysis of signaling pathways for reactive nitrogen oxide species in escherichia coli Aiche Annual Meeting, Conference Proceedings. 10384.  0.674
2004 Jarboe LR, Beckwith D, Liao JC. Stochastic modeling of the phase-variable pap operon regulation in uropathogenic Escherichia coli. Biotechnology and Bioengineering. 88: 189-203. PMID 15449298 DOI: 10.1002/Bit.20228  0.481
Low-probability matches (unlikely to be authored by this person)
2019 Santoscoy MC, Jarboe LR. Streamlined assessment of membrane permeability and its application to membrane engineering of Escherichia coli for octanoic acid tolerance. Journal of Industrial Microbiology & Biotechnology. PMID 30806872 DOI: 10.1007/S10295-019-02158-6  0.3
2012 Turner PC, Yomano LP, Jarboe LR, York SW, Baggett CL, Moritz BE, Zentz EB, Shanmugam KT, Ingram LO. Optical mapping and sequencing of the Escherichia coli KO11 genome reveal extensive chromosomal rearrangements, and multiple tandem copies of the Zymomonas mobilis pdc and adhB genes. Journal of Industrial Microbiology & Biotechnology. 39: 629-39. PMID 22075923 DOI: 10.1007/S10295-011-1052-2  0.298
2018 Jarboe LR. Improving the success and impact of the metabolic engineering design, build, test, learn cycle by addressing proteins of unknown function. Current Opinion in Biotechnology. 53: 93-98. PMID 29306676 DOI: 10.1016/J.Copbio.2017.12.017  0.296
2016 Lian J, Choi J, Tan YS, Howe A, Wen Z, Jarboe LR. Identification of Soil Microbes Capable of Utilizing Cellobiosan. Plos One. 11: e0149336. PMID 26872347 DOI: 10.1371/Journal.Pone.0149336  0.295
2011 Liu P, Soupir ML, Zwonitzer M, Huss B, Jarboe LR. Association of antibiotic resistance in agricultural Escherichia coli isolates with attachment to quartz. Applied and Environmental Microbiology. 77: 6945-53. PMID 21821756 DOI: 10.1128/Aem.00717-11  0.293
2010 Fu Y, Jarboe L, Dickerson JA. Gene regulatory network reconstruction based on gene expression and transcription factor activities F1000research. 1. DOI: 10.7490/F1000Research.259.1  0.289
2014 Liang X, Soupir ML, Rigby S, Jarboe LR, Zhang W. Flow cytometry is a promising and rapid method for differentiating between freely suspended Escherichia coli and E. coli attached to clay particles. Journal of Applied Microbiology. 117: 1730-9. PMID 25284438 DOI: 10.1111/Jam.12660  0.277
2012 Kautharapu KB, Jarboe LR. Genome sequence of the psychrophilic deep-sea bacterium Moritella marina MP-1 (ATCC 15381). Journal of Bacteriology. 194: 6296-7. PMID 23105048 DOI: 10.1128/Jb.01382-12  0.273
2015 Bacik JP, Klesmith JR, Whitehead TA, Jarboe LR, Unkefer CJ, Mark BL, Michalczyk R. Producing glucose-6-phosphate from cellulosic biomass: structural insights into levoglucosan bioconversion. The Journal of Biological Chemistry. PMID 26354439 DOI: 10.1074/Jbc.M115.674614  0.273
2013 Chi Z, Rover M, Jun E, Deaton M, Johnston P, Brown RC, Wen Z, Jarboe LR. Overliming detoxification of pyrolytic sugar syrup for direct fermentation of levoglucosan to ethanol. Bioresource Technology. 150: 220-7. PMID 24177154 DOI: 10.1016/J.Biortech.2013.09.138  0.267
2013 Royce L, Boggess E, Jin T, Dickerson J, Jarboe L. Identification of mutations in evolved bacterial genomes Methods in Molecular Biology. 985: 249-267. PMID 23417808 DOI: 10.1007/978-1-62703-299-5_13  0.264
2016 Zwonitzer MR, Soupir ML, Jarboe LR, Smith DR. Quantifying Attachment and Antibiotic Resistance of from Conventional and Organic Swine Manure. Journal of Environmental Quality. 45: 609-17. PMID 27065408 DOI: 10.2134/Jeq2015.05.0245  0.263
2015 Zhao X, Davis K, Brown R, Jarboe L, Wen Z. Alkaline treatment for detoxification of acetic acid-rich pyrolytic bio-oil for microalgae fermentation: Effects of alkaline species and the detoxification mechanisms Biomass and Bioenergy. 80: 203-212. DOI: 10.1016/J.Biombioe.2015.05.007  0.262
2011 Jarboe LR, Wen Z, Choi D, Brown RC. Hybrid thermochemical processing: fermentation of pyrolysis-derived bio-oil. Applied Microbiology and Biotechnology. 91: 1519-23. PMID 21789490 DOI: 10.1007/S00253-011-3495-9  0.26
2015 Liao C, Liang X, Soupir ML, Jarboe LR. Cellular, particle and environmental parameters influencing attachment in surface waters: a review. Journal of Applied Microbiology. 119: 315-30. PMID 26033178 DOI: 10.1111/Jam.12860  0.252
2019 Jarboe LR. Regional, institutional, and departmental factors associated with gender diversity among BS-level chemical and electrical engineering graduates. Plos One. 14: e0223568. PMID 31596881 DOI: 10.1371/Journal.Pone.0223568  0.225
2022 Santoscoy MC, Jarboe LR. Production of cholesterol-like molecules impacts Escherichia coli robustness, production capacity, and vesicle trafficking. Metabolic Engineering. 73: 134-143. PMID 35842218 DOI: 10.1016/j.ymben.2022.07.004  0.211
2023 Fashkhami KN, Jarboe LR. Strategic nutrient sourcing for biomanufacturing intensification. Journal of Industrial Microbiology & Biotechnology. PMID 37245065 DOI: 10.1093/jimb/kuad011  0.184
2022 Rodriguez-Ocasio E, Khalid A, Truka CJ, Blenner MA, Jarboe LR. Survey of non-conventional yeasts for lipid and hydrocarbon biotechnology. Journal of Industrial Microbiology & Biotechnology. PMID 35348703 DOI: 10.1093/jimb/kuac010  0.18
2022 Liao C, Santoscoy MC, Craft J, Anderson C, Soupir ML, Jarboe LR. Allelic variation of Escherichia coli outer membrane protein A: Impact on cell surface properties, stress tolerance and allele distribution. Plos One. 17: e0276046. PMID 36227900 DOI: 10.1371/journal.pone.0276046  0.173
2022 Jarboe LR, Khalid A, Ocasio ER, Fashkami KN. Extrapolation of design strategies for lignocellulosic biomass conversion to the challenge of plastic waste. Journal of Industrial Microbiology & Biotechnology. PMID 35040946 DOI: 10.1093/jimb/kuac001  0.162
2007 Jarboe LR, Shanmugan KT, Ingram LO. Advances in engineering of eschericia coli to produce ethanol and other commodity products 2007 Aiche Annual Meeting 0.153
2013 Jarboe LR, Chi Z. Inhibition of microbial biocatalysts by biomass-derived aldehydes and methods for engineering tolerance New Developments in Aldehydes Research. 101-119.  0.15
2012 Liang X, Soupir M, Rigby S, Jarboe L, Zhang W. Method to partition between freely suspended Escherichia coli and Escherichia coli attached to clay particles American Society of Agricultural and Biological Engineers Annual International Meeting 2012, Asabe 2012. 4: 2712-2722.  0.139
2021 Santoscoy MC, Jarboe LR. A systematic framework for using membrane metrics for strain engineering. Metabolic Engineering. 66: 98-113. PMID 33813035 DOI: 10.1016/j.ymben.2021.03.012  0.124
2012 Del Campo BG, Brown RC, Laird D, Jarboe LR. Production of activated carbon from fast pyrolysis biochar Aiche 2012 - 2012 Aiche Annual Meeting, Conference Proceedings 0.093
2012 Jin T, Liang Y, Layton DS, Deaton MM, Chi Z, Brown RC, Wen Z, Jarboe LR. Hybrid thermochemical processing: fermentation of pyrolytic substrates Aiche 2012 - 2012 Aiche Annual Meeting, Conference Proceedings 0.085
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