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Morgan D. Beeby, Ph.D. - Publications

Affiliations: 
2007 University of California, Los Angeles, Los Angeles, CA 
Area:
structural and computational biology
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Kaplan M, Oikonomou CM, Wood CR, Chreifi G, Ghosal D, Dobro MJ, Yao Q, Pal RR, Baidya AK, Liu Y, Maggi S, McDowall AW, Ben-Yehuda S, Rosenshine I, Briegel A, ... Beeby M, et al. Discovery of a Novel Inner Membrane-Associated Bacterial Structure Related to the Flagellar Type III Secretion System. Journal of Bacteriology. e0014422. PMID 35862756 DOI: 10.1128/jb.00144-22  0.395
2020 Blagotinsek V, Schwan M, Steinchen W, Mrusek D, Hook JC, Rossmann F, Freibert SA, Kratzat H, Murat G, Kressler D, Beckmann R, Beeby M, Thormann KM, Bange G. An ATP-dependent partner switch links flagellar C-ring assembly with gene expression. Proceedings of the National Academy of Sciences of the United States of America. PMID 32788349 DOI: 10.1073/Pnas.2006470117  0.306
2020 Beeby M. Toward Organism-scale Structural Biology: S-layer Reined in by Bacterial LPS Trends in Biochemical Sciences. 45: 549-551. PMID 32531227 DOI: 10.1016/J.Tibs.2020.03.006  0.366
2020 Rossmann FM, Hug I, Sangermani M, Jenal U, Beeby M. In situ structure of the Caulobacter crescentus flagellar motor and visualization of binding of a CheY-homolog. Molecular Microbiology. 114: 443-453. PMID 32449846 DOI: 10.1111/Mmi.14525  0.382
2020 Kaplan M, Sweredoski MJ, Rodrigues JPGLM, Tocheva EI, Chang YW, Ortega DR, Beeby M, Jensen GJ. Bacterial flagellar motor PL-ring disassembly subcomplexes are widespread and ancient. Proceedings of the National Academy of Sciences of the United States of America. PMID 32241888 DOI: 10.1073/Pnas.1916935117  0.31
2020 Beeby M, Ferreira JL, Tripp P, Albers SV, Mitchell DR. Propulsive nanomachines: the convergent evolution of archaella, flagella, and cilia. Fems Microbiology Reviews. PMID 32149348 DOI: 10.1093/Femsre/Fuaa006  0.36
2020 Henderson LD, Matthews-Palmer TRS, Gulbronson CJ, Ribardo DA, Beeby M, Hendrixson DR. Diversification of Campylobacter jejuni Flagellar C-Ring Composition Impacts Its Structure and Function in Motility, Flagellar Assembly, and Cellular Processes. Mbio. 11. PMID 31911488 DOI: 10.1128/Mbio.02286-19  0.4
2019 Tsai CL, Tripp P, Sivabalasarma S, Zhang C, Rodriguez-Franco M, Wipfler RL, Chaudhury P, Banerjee A, Beeby M, Whitaker RJ, Tainer JA, Albers SV. The structure of the periplasmic FlaG-FlaF complex and its essential role for archaellar swimming motility. Nature Microbiology. PMID 31844299 DOI: 10.1038/S41564-019-0622-3  0.396
2019 Ferreira JL, Gao FZ, Rossmann FM, Nans A, Brenzinger S, Hosseini R, Wilson A, Briegel A, Thormann KM, Rosenthal PB, Beeby M. γ-proteobacteria eject their polar flagella under nutrient depletion, retaining flagellar motor relic structures. Plos Biology. 17: e3000165. PMID 30889173 DOI: 10.1371/Journal.Pbio.3000165  0.362
2018 Thomson NM, Ferreira JL, Matthews-Palmer TR, Beeby M, Pallen MJ. Giant flagellins form thick flagellar filaments in two species of marine γ-proteobacteria. Plos One. 13: e0206544. PMID 30462661 DOI: 10.1371/Journal.Pone.0206544  0.385
2018 Rossmann FM, Beeby M. Insights into the evolution of bacterial flagellar motors from high-throughput in situ electron cryotomography and subtomogram averaging Acta Crystallographica Section D-Biological Crystallography. 74: 585-594. PMID 29872008 DOI: 10.1107/S2059798318007945  0.373
2018 Henderson LD, Beeby M. High-Throughput Electron Cryo-tomography of Protein Complexes and Their Assembly. Methods in Molecular Biology (Clifton, N.J.). 1764: 29-44. PMID 29605906 DOI: 10.1007/978-1-4939-7759-8_2  0.318
2018 Chaban B, Coleman I, Beeby M. Evolution of higher torque in Campylobacter-type bacterial flagellar motors. Scientific Reports. 8: 97. PMID 29311627 DOI: 10.1038/S41598-017-18115-1  0.327
2017 Thomson NM, Rossmann FM, Ferreira JL, Matthews-Palmer TR, Beeby M, Pallen MJ. Bacterial Flagellins: Does Size Matter? Trends in Microbiology. PMID 29258714 DOI: 10.1016/J.Tim.2017.11.010  0.341
2017 Asmar AT, Ferreira JL, Cohen EJ, Cho SH, Beeby M, Hughes KT, Collet JF. Communication across the bacterial cell envelope depends on the size of the periplasm. Plos Biology. 15: e2004303. PMID 29257832 DOI: 10.1371/Journal.Pbio.2004303  0.351
2017 Yao Q, Jewett AI, Chang YW, Oikonomou CM, Beeby M, Iancu CV, Briegel A, Ghosal D, Jensen GJ. Short FtsZ filaments can drive asymmetric cell envelope constriction at the onset of bacterial cytokinesis. The Embo Journal. PMID 28438890 DOI: 10.15252/Embj.201696235  0.378
2016 Taylor WR, Matthews-Palmer TR, Beeby M. Molecular Models for the Core Components of the Flagellar Type-III Secretion Complex. Plos One. 11: e0164047. PMID 27855178 DOI: 10.1371/Journal.Pone.0164047  0.41
2016 Haurat MF, Figueiredo AS, Hoffmann L, Li L, Herr K, Wilson A, Beeby M, Schaber J, Albers SV. ArnS, a kinase involved in starvation-induced archaellum expression. Molecular Microbiology. PMID 27731916 DOI: 10.1111/Mmi.13550  0.3
2016 Beeby M, Ribardo DA, Brennan CA, Ruby EG, Jensen GJ, Hendrixson DR. Erratum: Diverse high-torque bacterial flagellar motors assemble wider stator rings using a conserved protein scaffold (Proceedings of the National Academy of Sciences of the United States of America (2016) 113 (E1917-E1926) 10.1073/pnas.1518952113)) Proceedings of the National Academy of Sciences of the United States of America. 113. PMID 27140639 DOI: 10.1073/Pnas.1605597113  0.326
2016 Beeby M, Ribardo DA, Brennan CA, Ruby EG, Jensen GJ, Hendrixson DR. Diverse high-torque bacterial flagellar motors assemble wider stator rings using a conserved protein scaffold. Proceedings of the National Academy of Sciences of the United States of America. PMID 26976588 DOI: 10.1073/Pnas.1518952113  0.388
2016 Nguyen LT, Swulius M, Gumbart JC, Beeby M, Jensen GJ. Coarse-Grained Simulations Reveal Mechanisms of Bacterial Morphogenesis Biophysical Journal. 110: 468a. DOI: 10.1016/J.Bpj.2015.11.2505  0.306
2016 Oikonomou CM, Swulius MT, Briegel A, Beeby M, Yao Q, Chang Y-, Jensen GJ. Chapter 4 - Electron cryotomography Methods in Microbiology. 43: 115-139. DOI: 10.1016/Bs.Mim.2016.10.001  0.324
2015 Beeby M. Motility in the epsilon-proteobacteria Current Opinion in Microbiology. 28: 115-121. PMID 26590774 DOI: 10.1016/J.Mib.2015.09.005  0.316
2015 Chaban B, Hughes HV, Beeby M. The flagellum in bacterial pathogens: For motility and a whole lot more. Seminars in Cell & Developmental Biology. PMID 26541483 DOI: 10.1016/J.Semcdb.2015.10.032  0.33
2015 Nguyen LT, Gumbart JC, Beeby M, Jensen GJ. Coarse-grained simulations of bacterial cell wall growth reveal that local coordination alone can be sufficient to maintain rod shape. Proceedings of the National Academy of Sciences of the United States of America. PMID 26130803 DOI: 10.1073/Pnas.1504281112  0.32
2014 Gumbart JC, Beeby M, Jensen GJ, Roux B. Escherichia coli peptidoglycan structure and mechanics as predicted by atomic-scale simulations. Plos Computational Biology. 10: e1003475. PMID 24586129 DOI: 10.1371/Journal.Pcbi.1003475  0.353
2013 Beeby M, Gumbart JC, Roux B, Jensen GJ. Architecture and assembly of the Gram-positive cell wall. Molecular Microbiology. 88: 664-72. PMID 23600697 DOI: 10.1111/Mmi.12203  0.319
2013 Abrusci P, Vergara-Irigaray M, Johnson S, Beeby MD, Hendrixson DR, Roversi P, Friede ME, Deane JE, Jensen GJ, Tang CM, Lea SM. Architecture of the major component of the type III secretion system export apparatus. Nature Structural & Molecular Biology. 20: 99-104. PMID 23222644 DOI: 10.1038/Nsmb.2452  0.351
2013 Gumbart JC, Beeby M, Jensen G, Roux B. Assembly and Architecture of Gram-Positive and -Negative Cell Walls Biophysical Journal. 104: 642a. DOI: 10.1016/J.Bpj.2012.11.3544  0.327
2012 Beeby M, Cho M, Stubbe J, Jensen GJ. Growth and localization of polyhydroxybutyrate granules in Ralstonia eutropha. Journal of Bacteriology. 194: 1092-9. PMID 22178974 DOI: 10.1128/Jb.06125-11  0.324
2011 Briegel A, Beeby M, Thanbichler M, Jensen GJ. Activated chemoreceptor arrays remain intact and hexagonally packed. Molecular Microbiology. 82: 748-57. PMID 21992450 DOI: 10.1111/J.1365-2958.2011.07854.X  0.304
2011 Chen S, Beeby M, Murphy GE, Leadbetter JR, Hendrixson DR, Briegel A, Li Z, Shi J, Tocheva EI, Müller A, Dobro MJ, Jensen GJ. Structural diversity of bacterial flagellar motors. The Embo Journal. 30: 2972-81. PMID 21673657 DOI: 10.1038/Emboj.2011.186  0.405
2010 Chen S, McDowall A, Dobro MJ, Briegel A, Ladinsky M, Shi J, Tocheva EI, Beeby M, Pilhofer M, Ding HJ, Li Z, Gan L, Morris DM, Jensen GJ. Electron cryotomography of bacterial cells. Journal of Visualized Experiments : Jove. PMID 20461053 DOI: 10.3791/1943  0.336
2009 Chim N, McMath LM, Beeby M, Goulding CW. Advances in Mycobacterium tuberculosis structural genomics: investigating potential chinks in the armor of a deadly pathogen. Infectious Disorders Drug Targets. 9: 475-92. PMID 19594421 DOI: 10.2174/187152609789105731  0.353
2009 Beeby M, Bobik TA, Yeates TO. Exploiting genomic patterns to discover new supramolecular protein assemblies. Protein Science : a Publication of the Protein Society. 18: 69-79. PMID 19177352 DOI: 10.1002/Pro.1  0.609
2006 Yeates TO, Beeby M. Biochemistry. Proteins in a small world. Science (New York, N.Y.). 314: 1882-3. PMID 17185587 DOI: 10.1126/Science.1137400  0.592
2005 Beeby M, O'Connor BD, Ryttersgaard C, Boutz DR, Perry LJ, Yeates TO. The genomics of disulfide bonding and protein stabilization in thermophiles. Plos Biology. 3: e309. PMID 16111437 DOI: 10.1371/Journal.Pbio.0030309  0.692
2005 Kerfeld CA, Sawaya MR, Tanaka S, Nguyen CV, Phillips M, Beeby M, Yeates TO. Protein structures forming the shell of primitive bacterial organelles. Science (New York, N.Y.). 309: 936-8. PMID 16081736 DOI: 10.1126/Science.1113397  0.725
2005 Yeates T, Kerfeld C, Sawaya M, Tanaka S, Beeby M, Phillips M. Disorder and twinning: new equations and applications to the structure determination of proteins from the carboxysome shell Acta Crystallographica Section a Foundations of Crystallography. 61: c84-c84. DOI: 10.1107/S0108767305096467  0.68
2005 Kerfeld CA, Sawaya MR, Tanaka S, Beeby M, Laidman J, Yeates TO. Structural studies on carboxysomes Acta Crystallographica Section a Foundations of Crystallography. 61: c92-c92. DOI: 10.1107/S010876730509611X  0.681
2003 Strong M, Graeber TG, Beeby M, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D. Visualization and interpretation of protein networks in Mycobacterium tuberculosis based on hierarchical clustering of genome-wide functional linkage maps. Nucleic Acids Research. 31: 7099-109. PMID 14654685 DOI: 10.1093/Nar/Gkg924  0.547
1999 Eads JC, Beeby M, Scapin G, Yu TW, Floss HG. Crystal structure of 3-amino-5-hydroxybenzoic acid (AHBA) synthase. Biochemistry. 38: 9840-9. PMID 10433690 DOI: 10.1021/Bi990018Q  0.301
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