☰

Beatrix M. Ueberheide, Ph.D. - Publications

Affiliations: 
2005 University of Virginia, Charlottesville, VA 
Area:
Analytical Biochemistry
Tree Info Similar researchers PubMed Report error

36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Chapman JR, Paukner M, Leser M, Teng KW, Koide S, Holder M, Armache KJ, Becker C, Ueberheide B, Brenowitz M. Systematic Fe(II)-EDTA Method of Dose-Dependent Hydroxyl Radical Generation for Protein Oxidative Footprinting. Analytical Chemistry. PMID 38049117 DOI: 10.1021/acs.analchem.3c02319  0.505
2021 Zheng X, Marsman G, Lacey KA, Chapman JR, Goosmann C, Ueberheide BM, Torres VJ. The cell envelope of Staphylococcus aureus selectively controls the sorting of virulence factors. Nature Communications. 12: 6193. PMID 34702812 DOI: 10.1038/s41467-021-26517-z  0.457
2019 Lee CH, Yu JR, Granat J, Saldaña-Meyer R, Andrade J, LeRoy G, Jin Y, Lund P, Stafford JM, Garcia BA, Ueberheide B, Reinberg D. Automethylation of PRC2 promotes H3K27 methylation and is impaired in H3K27M pediatric glioma. Genes & Development. PMID 31488577 DOI: 10.1101/Gad.328773.119  0.48
2018 Brenowitz M, Chapman JR, Ueberheide B, Khine M, Pegan J, Law M, Makkaoui ME, Leser M. Chemical Generation of Hydroxyl Radical for Oxidative 'Footprinting'. Protein and Peptide Letters. PMID 30543161 DOI: 10.2174/0929866526666181212164812  0.406
2018 Stafford JM, Lee CH, Voigt P, Descostes N, Saldaña-Meyer R, Yu JR, Leroy G, Oksuz O, Chapman JR, Suarez F, Modrek AS, Bayin NS, Placantonakis DG, Karajannis MA, Snuderl M, ... Ueberheide B, et al. Multiple modes of PRC2 inhibition elicit global chromatin alterations in H3K27M pediatric glioma. Science Advances. 4: eaau5935. PMID 30402543 DOI: 10.1126/Sciadv.Aau5935  0.511
2018 Diamond JM, Vanpouille-Box C, Spada S, Rudqvist NP, Chapman J, Ueberheide B, Pilones KA, Sarfraz Y, Formenti SC, Demaria S. Exosomes shuttle TREX1-sensitive IFN-stimulatory dsDNA from irradiated cancer cells to dendritic cells. Cancer Immunology Research. PMID 29907693 DOI: 10.1158/2326-6066.Cir-17-0581  0.437
2018 Harper L, Balasubramanian D, Ohneck EA, Sause WE, Chapman J, Mejia-Sosa B, Lhakhang T, Heguy A, Tsirigos A, Ueberheide B, Boyd JM, Lun DS, Torres VJ. Staphylococcus aureus Responds to the Central Metabolite Pyruvate To Regulate Virulence. Mbio. 9. PMID 29362239 DOI: 10.1128/Mbio.02272-17  0.444
2017 Chen Z, Notti RQ, Ueberheide BM, Ruthenburg AJ. Quantitative and structural assessment of histone methyllysine analog engagement by cognate binding proteins reveals affinity decrements relative to native counterparts. Biochemistry. PMID 29111671 DOI: 10.1021/Acs.Biochem.7B00926  0.347
2017 Moretti J, Roy S, Bozec D, Martinez J, Chapman JR, Ueberheide B, Lamming DW, Chen ZJ, Horng T, Yeretssian G, Green DR, Blander JM. STING Senses Microbial Viability to Orchestrate Stress-Mediated Autophagy of the Endoplasmic Reticulum. Cell. PMID 29056340 DOI: 10.1016/J.Cell.2017.09.034  0.429
2017 Coleman KE, Békés M, Chapman JR, Crist SB, Jones MJ, Ueberheide BM, Huang TT. SENP8 limits aberrant neddylation of NEDD8 pathway components to promote cullin-RING ubiquitin ligase function. Elife. 6. PMID 28475037 DOI: 10.7554/Elife.24325  0.468
2017 Chapman JR, Katsara O, Ruoff R, Morgenstern D, Nayak S, Basilico C, Ueberheide B, Kolupaeva V. Phosphoproteomics of FGF1 signaling in chondrocytes: Identifying the signature of inhibitory response. Molecular & Cellular Proteomics : McP. PMID 28298517 DOI: 10.1074/Mcp.M116.064980  0.477
2017 Chapman JR, Balasubramanian D, Tam K, Askenazi M, Copin R, Shopsin B, Torres VJ, Ueberheide B. Using quantitative mass spectrometry to better understand the influence of genetics and nutritional perturbations on the virulence potential of Staphylococcus aureus. Molecular & Cellular Proteomics : McP. PMID 28196877 DOI: 10.1074/Mcp.O116.065581  0.507
2016 Diamond J, Chapman J, Ueberheide B, Formenti S, Demaria S. Tumor-Derived Exosomes as Modulators of Radiation-Induced Anti-Tumor Immunity. International Journal of Radiation Oncology, Biology, Physics. 96: S53. PMID 27675954 DOI: 10.1016/J.Ijrobp.2016.06.138  0.402
2016 Balasubramanian D, Ohneck EA, Chapman J, Weiss A, Kim MK, Reyes-Robles T, Zhong J, Shaw LN, Lun DS, Ueberheide B, Shopsin B, Torres VJ. Staphylococcus aureus Coordinates Leukocidin Expression and Pathogenesis by Sensing Metabolic Fluxes via RpiRc. Mbio. 7. PMID 27329753 DOI: 10.1128/Mbio.00818-16  0.469
2016 Tufariello JM, Chapman JR, Kerantzas CA, Wong KW, Vilchèze C, Jones CM, Cole LE, Tinaztepe E, Thompson V, Fenyö D, Niederweis M, Ueberheide B, Philips JA, Jacobs WR. Separable roles for Mycobacterium tuberculosis ESX-3 effectors in iron acquisition and virulence. Proceedings of the National Academy of Sciences of the United States of America. PMID 26729876 DOI: 10.1073/Pnas.1523321113  0.435
2015 Campos EI, Smits AH, Kang YH, Landry S, Escobar TM, Nayak S, Ueberheide BM, Durocher D, Vermeulen M, Hurwitz J, Reinberg D. Analysis of the Histone H3.1 Interactome: A Suitable Chaperone for the Right Event. Molecular Cell. PMID 26527279 DOI: 10.1016/J.Molcel.2015.08.005  0.312
2015 Diamond JM, Chapman JR, Ueberheide B, Formenti S, Demaria S. Ionizing radiation modifies immune-related molecular profiles of tumor-derived exosomes Journal For Immunotherapy of Cancer. 3. DOI: 10.1186/2051-1426-3-S2-P382  0.441
2013 Békés M, Okamoto K, Crist SB, Jones MJ, Chapman JR, Brasher BB, Melandri FD, Ueberheide BM, Denchi EL, Huang TT. DUB-resistant ubiquitin to survey ubiquitination switches in mammalian cells. Cell Reports. 5: 826-38. PMID 24210823 DOI: 10.1016/J.Celrep.2013.10.008  0.471
2012 Cotto-Rios XM, Békés M, Chapman J, Ueberheide B, Huang TT. Deubiquitinases as a signaling target of oxidative stress. Cell Reports. 2: 1475-84. PMID 23219552 DOI: 10.1016/J.Celrep.2012.11.011  0.459
2012 Bozzacco L, Yu H, Dengjel J, Trumpfheller C, Zebroski HA, Zhang N, Küttner V, Ueberheide BM, Deng H, Chait BT, Steinman RM, Mojsov S, Fenyö D. Strategy for identifying dendritic cell-processed CD4+ T cell epitopes from the HIV gag p24 protein. Plos One. 7: e41897. PMID 22860026 DOI: 10.1371/Journal.Pone.0041897  0.342
2011 Ruthenburg AJ, Li H, Milne TA, Dewell S, McGinty RK, Yuen M, Ueberheide B, Dou Y, Muir TW, Patel DJ, Allis CD. Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions. Cell. 145: 692-706. PMID 21596426 DOI: 10.1016/J.Cell.2011.03.053  0.43
2010 Garcia BA, Cooper HJ, Dorrestein PC, Tang K, Ueberheide BM. Proteomics. Journal of Biomedicine & Biotechnology. 2010: 453045. PMID 21541239 DOI: 10.1155/2010/453045  0.422
2010 Zhang G, Ueberheide BM, Waldemarson S, Myung S, Molloy K, Eriksson J, Chait BT, Neubert TA, Fenyö D. Protein quantitation using mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 673: 211-22. PMID 20835801 DOI: 10.1007/978-1-60761-842-3_13  0.434
2009 Basu A, Rose KL, Zhang J, Beavis RC, Ueberheide B, Garcia BA, Chait B, Zhao Y, Hunt DF, Segal E, Allis CD, Hake SB. Proteome-wide prediction of acetylation substrates. Proceedings of the National Academy of Sciences of the United States of America. 106: 13785-90. PMID 19666589 DOI: 10.1073/Pnas.0906801106  0.605
2009 Ueberheide BM, Fenyö D, Alewood PF, Chait BT. Rapid sensitive analysis of cysteine rich peptide venom components. Proceedings of the National Academy of Sciences of the United States of America. 106: 6910-5. PMID 19380747 DOI: 10.1073/Pnas.0900745106  0.409
2007 Garcia BA, Mollah S, Ueberheide BM, Busby SA, Muratore TL, Shabanowitz J, Hunt DF. Chemical derivatization of histones for facilitated analysis by mass spectrometry. Nature Protocols. 2: 933-8. PMID 17446892 DOI: 10.1038/Nprot.2007.106  0.729
2007 Taverna SD, Ueberheide BM, Liu Y, Tackett AJ, Diaz RL, Shabanowitz J, Chait BT, Hunt DF, Allis CD. Long-distance combinatorial linkage between methylation and acetylation on histone H3 N termini. Proceedings of the National Academy of Sciences of the United States of America. 104: 2086-91. PMID 17284592 DOI: 10.1073/Pnas.0610993104  0.585
2007 Ueberheide BM, Mollah S. Deciphering the histone code using mass spectrometry International Journal of Mass Spectrometry. 259: 46-56. DOI: 10.1016/J.Ijms.2006.09.001  0.685
2006 Mikesh LM, Ueberheide B, Chi A, Coon JJ, Syka JE, Shabanowitz J, Hunt DF. The utility of ETD mass spectrometry in proteomic analysis. Biochimica Et Biophysica Acta. 1764: 1811-22. PMID 17118725 DOI: 10.1016/J.Bbapap.2006.10.003  0.746
2006 Li J, Riehle MM, Zhang Y, Xu J, Oduol F, Gomez SM, Eiglmeier K, Ueberheide BM, Shabanowitz J, Hunt DF, Ribeiro JM, Vernick KD. Anopheles gambiae genome reannotation through synthesis of ab initio and comparative gene prediction algorithms. Genome Biology. 7: R24. PMID 16569258 DOI: 10.1186/Gb-2006-7-3-R24  0.473
2005 Fischle W, Tseng BS, Dormann HL, Ueberheide BM, Garcia BA, Shabanowitz J, Hunt DF, Funabiki H, Allis CD. Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation. Nature. 438: 1116-22. PMID 16222246 DOI: 10.1038/Nature04219  0.617
2005 Coon JJ, Ueberheide B, Syka JE, Dryhurst DD, Ausio J, Shabanowitz J, Hunt DF. Protein identification using sequential ion/ion reactions and tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 102: 9463-8. PMID 15983376 DOI: 10.1073/Pnas.0503189102  0.752
2004 Syka JE, Marto JA, Bai DL, Horning S, Senko MW, Schwartz JC, Ueberheide B, Garcia B, Busby S, Muratore T, Shabanowitz J, Hunt DF. Novel linear quadrupole ion trap/FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 post-translational modifications. Journal of Proteome Research. 3: 621-6. PMID 15253445 DOI: 10.1021/Pr0499794  0.68
2004 Barber CM, Turner FB, Wang Y, Hagstrom K, Taverna SD, Mollah S, Ueberheide B, Meyer BJ, Hunt DF, Cheung P, Allis CD. The enhancement of histone H4 and H2A serine 1 phosphorylation during mitosis and S-phase is evolutionarily conserved. Chromosoma. 112: 360-71. PMID 15133681 DOI: 10.1007/S00412-004-0281-9  0.683
2003 Rice JC, Briggs SD, Ueberheide B, Barber CM, Shabanowitz J, Hunt DF, Shinkai Y, Allis CD. Histone methyltransferases direct different degrees of methylation to define distinct chromatin domains. Molecular Cell. 12: 1591-8. PMID 14690610 DOI: 10.1016/S1097-2765(03)00479-9  0.548
2002 Mollah S, Ueberheide B, Busby S, Moran R, Barber CM, Shabanowitz J, Allis CD, Hunt DF. New approach to mapping of post-translational modifications of histones Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 331-332.  0.652
Show low-probability matches.